Wall clock time and date at job start Tue Mar 31 2020 06:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34224 * 117.00125 * 2 1 4 4 O 1.20826 * 120.00184 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00315 * 179.97438 * 3 2 1 6 6 C 1.52997 * 109.47342 * 155.00021 * 5 3 2 7 7 N 1.46902 * 109.46927 * 34.99556 * 5 3 2 8 8 C 1.46905 * 110.99800 * 60.00311 * 7 5 3 9 9 C 1.53000 * 109.47234 * 179.97438 * 8 7 5 10 10 H 1.08989 * 109.46804 * 59.99859 * 9 8 7 11 11 O 1.42898 * 109.46946 * 299.99793 * 9 8 7 12 12 C 1.50695 * 109.46861 * 179.97438 * 9 8 7 13 13 H 1.08002 * 120.00407 * 0.02562 * 12 9 8 14 14 C 1.37882 * 119.99561 * 179.97438 * 12 9 8 15 15 N 1.31504 * 120.00353 * 0.02562 * 14 12 9 16 16 Si 1.86809 * 119.99803 * 179.97438 * 14 12 9 17 17 H 1.48499 * 109.46966 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47045 * 119.99866 * 16 14 12 19 19 H 1.48501 * 109.47145 * 240.00221 * 16 14 12 20 20 C 1.50706 * 109.47294 * 275.00238 * 5 3 2 21 21 C 1.38233 * 120.00109 * 119.72127 * 20 5 3 22 22 C 1.38238 * 119.99754 * 179.76611 * 21 20 5 23 23 C 1.38234 * 120.00016 * 0.50732 * 22 21 20 24 24 C 1.38238 * 120.00063 * 359.74632 * 23 22 21 25 25 C 1.38235 * 120.00108 * 0.02562 * 24 23 22 26 26 H 1.08993 * 109.47406 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46775 * 300.00271 * 1 2 3 28 28 H 1.09000 * 109.47059 * 60.00028 * 1 2 3 29 29 H 1.09000 * 109.47140 * 180.02562 * 6 5 3 30 30 H 1.09001 * 109.47230 * 299.99432 * 6 5 3 31 31 H 1.09001 * 109.47375 * 60.00270 * 6 5 3 32 32 H 1.00898 * 110.99915 * 183.95162 * 7 5 3 33 33 H 1.08993 * 109.47004 * 300.00108 * 8 7 5 34 34 H 1.09002 * 109.47091 * 59.99861 * 8 7 5 35 35 H 0.96705 * 114.00390 * 300.00392 * 11 9 8 36 36 H 0.96997 * 120.00566 * 179.97438 * 15 14 12 37 37 H 1.08004 * 119.99934 * 0.02562 * 21 20 5 38 38 H 1.07999 * 119.99924 * 180.23621 * 22 21 20 39 39 H 1.08001 * 120.00318 * 179.72031 * 23 22 21 40 40 H 1.08000 * 120.00578 * 179.97438 * 24 23 22 41 41 H 1.07999 * 120.00165 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0074 2.6069 -0.6091 7 7 4.1150 0.1673 -0.7933 8 6 3.6406 0.2296 -2.1822 9 6 4.2323 -0.9368 -2.9761 10 1 3.9179 -1.8786 -2.5267 11 8 5.6586 -0.8519 -2.9557 12 6 3.7451 -0.8731 -4.4007 13 1 3.0803 -0.0798 -4.7092 14 6 4.1490 -1.8271 -5.3107 15 7 4.9589 -2.7927 -4.9352 16 14 3.5445 -1.7486 -7.0765 17 1 2.6488 -0.5757 -7.2414 18 1 4.7063 -1.6174 -7.9920 19 1 2.7974 -2.9907 -7.3996 20 6 4.0739 1.1777 1.4163 21 6 4.9190 0.1454 1.7782 22 6 5.3885 0.0591 3.0756 23 6 5.0045 0.9992 4.0135 24 6 4.1552 2.0285 3.6528 25 6 3.6895 2.1176 2.3543 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 5.0960 2.6638 -0.6091 30 1 3.6404 2.6772 -1.6331 31 1 3.6004 3.4287 -0.0200 32 1 5.1233 0.1602 -0.7556 33 1 2.5527 0.1654 -2.1978 34 1 3.9554 1.1714 -2.6318 35 1 6.0098 -0.0373 -3.3408 36 1 5.2427 -3.4641 -5.5752 37 1 5.2158 -0.5913 1.0464 38 1 6.0517 -0.7452 3.3574 39 1 5.3676 0.9292 5.0282 40 1 3.8548 2.7628 4.3856 41 1 3.0257 2.9215 2.0726 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119763651.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:26 Heat of formation + Delta-G solvation = -101.791226 kcal Electronic energy + Delta-G solvation = -24280.694738 eV Core-core repulsion = 20739.980206 eV Total energy + Delta-G solvation = -3540.714532 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.85756 -39.11318 -37.07363 -36.30052 -35.10949 -32.15163 -31.57710 -30.85241 -29.08110 -27.84977 -27.54486 -24.94695 -23.82166 -22.41159 -22.13191 -20.59030 -19.63100 -17.54980 -17.34350 -16.90348 -16.25203 -16.07142 -15.25047 -14.86176 -14.69332 -14.57065 -14.41496 -13.80796 -13.66103 -13.53367 -13.38969 -12.86646 -12.73038 -12.63435 -12.39127 -12.13601 -11.92404 -11.81588 -11.21818 -11.15400 -11.03095 -10.95999 -10.76783 -10.75160 -10.53458 -10.25869 -10.10904 -9.08224 -8.90309 -8.78120 -8.59363 -8.26366 -7.98916 -6.02434 -4.20638 1.26369 1.42411 2.34754 2.91289 3.25739 3.34237 3.37473 3.78146 4.22877 4.43091 4.62090 4.86961 4.97670 5.01379 5.12338 5.16096 5.23700 5.24967 5.31895 5.48553 5.58713 5.63059 5.68786 5.75027 5.93820 5.98744 6.04716 6.10827 6.22589 6.35062 6.44348 6.53222 6.54024 6.61243 6.83100 6.99048 7.24690 7.63287 7.75660 7.91248 7.95912 8.18053 8.82464 9.34337 9.56109 11.01843 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.019630 B = 0.004477 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.078981 B = 6252.538471 C = 6972.784744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.328 6.328 3 C 0.488 3.512 4 O -0.517 6.517 5 C 0.163 3.837 6 C -0.168 4.168 7 N -0.661 5.661 8 C 0.028 3.972 9 C 0.236 3.764 10 H 0.067 0.933 11 O -0.564 6.564 12 C -0.573 4.573 13 H 0.054 0.946 14 C 0.081 3.919 15 N -0.857 5.857 16 Si 0.888 3.112 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.282 1.282 20 C -0.078 4.078 21 C -0.085 4.085 22 C -0.123 4.123 23 C -0.119 4.119 24 C -0.125 4.125 25 C -0.112 4.112 26 H 0.101 0.899 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.355 0.645 33 H 0.065 0.935 34 H 0.027 0.973 35 H 0.341 0.659 36 H 0.260 0.740 37 H 0.143 0.857 38 H 0.124 0.876 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.021 8.123 15.161 17.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.243 6.243 3 C 0.331 3.669 4 O -0.405 6.405 5 C 0.069 3.931 6 C -0.227 4.227 7 N -0.296 5.296 8 C -0.100 4.100 9 C 0.178 3.822 10 H 0.085 0.915 11 O -0.367 6.367 12 C -0.611 4.611 13 H 0.073 0.927 14 C -0.125 4.125 15 N -0.492 5.492 16 Si 0.715 3.285 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.208 1.208 20 C -0.079 4.079 21 C -0.103 4.103 22 C -0.141 4.141 23 C -0.137 4.137 24 C -0.143 4.143 25 C -0.131 4.131 26 H 0.120 0.880 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.177 0.823 33 H 0.084 0.916 34 H 0.045 0.955 35 H 0.184 0.816 36 H 0.070 0.930 37 H 0.161 0.839 38 H 0.142 0.858 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.714 7.177 15.588 17.374 hybrid contribution -0.176 1.370 -1.671 2.168 sum -2.890 8.548 13.917 16.586 Atomic orbital electron populations 1.23277 0.77282 1.03726 1.01964 1.86699 1.22303 1.32456 1.82812 1.23364 0.91078 0.81407 0.71094 1.90621 1.66787 1.36671 1.46410 1.19516 0.87370 0.93105 0.93076 1.22429 1.02119 0.95925 1.02255 1.60757 1.15331 1.40498 1.13003 1.23039 1.00421 1.00566 0.85970 1.19381 0.77999 0.92390 0.92404 0.91538 1.86596 1.23511 1.43202 1.83343 1.21631 1.31380 1.12605 0.95515 0.92731 1.25006 0.94117 0.94764 0.98626 1.70080 1.31586 1.13118 1.34435 0.86634 0.78725 0.78077 0.85046 1.19763 1.20877 1.20832 1.19416 0.99098 0.96410 0.92930 1.21244 0.95498 0.96964 0.96627 1.21211 1.00321 0.99164 0.93370 1.21182 0.98045 0.95105 0.99394 1.21036 0.98551 0.98813 0.95911 1.21063 0.99966 0.98726 0.93309 0.88044 0.92434 0.92010 0.90848 0.90980 0.91010 0.82261 0.91635 0.95519 0.81565 0.93020 0.83899 0.85768 0.86250 0.86172 0.85994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 101.05 1.07 1.48 16 2 O -0.33 -5.63 9.62 -39.24 -0.38 -6.01 16 3 C 0.49 8.37 5.16 36.00 0.19 8.56 16 4 O -0.52 -9.31 15.84 -18.75 -0.30 -9.60 16 5 C 0.16 2.53 0.76 -133.90 -0.10 2.43 16 6 C -0.17 -2.39 7.58 37.16 0.28 -2.11 16 7 N -0.66 -11.41 4.86 -102.32 -0.50 -11.90 16 8 C 0.03 0.57 4.60 -3.82 -0.02 0.55 16 9 C 0.24 5.79 3.10 -27.89 -0.09 5.71 16 10 H 0.07 1.85 8.14 -51.94 -0.42 1.43 16 11 O -0.56 -13.65 12.07 -35.23 -0.43 -14.08 16 12 C -0.57 -15.48 8.76 -34.44 -0.30 -15.78 16 13 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 14 C 0.08 2.24 5.40 -17.82 -0.10 2.15 16 15 N -0.86 -24.96 12.84 55.43 0.71 -24.24 16 16 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 17 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 C -0.08 -1.10 4.76 -104.62 -0.50 -1.60 16 21 C -0.09 -1.15 9.14 -39.58 -0.36 -1.51 16 22 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 23 C -0.12 -1.25 10.05 -39.58 -0.40 -1.64 16 24 C -0.13 -1.37 10.05 -39.58 -0.40 -1.77 16 25 C -0.11 -1.44 8.82 -39.58 -0.35 -1.79 16 26 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 27 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 28 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.07 1.10 6.40 -51.93 -0.33 0.77 16 31 H 0.07 0.96 7.12 -51.93 -0.37 0.59 16 32 H 0.36 5.89 6.96 -39.29 -0.27 5.62 16 33 H 0.07 1.39 6.64 -51.93 -0.34 1.05 16 34 H 0.03 0.52 6.30 -51.93 -0.33 0.19 16 35 H 0.34 7.29 9.04 45.56 0.41 7.70 16 36 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 37 H 0.14 2.00 6.41 -52.48 -0.34 1.67 16 38 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 41 H 0.12 1.55 7.58 -52.49 -0.40 1.15 16 LS Contribution 342.22 15.07 5.16 5.16 Total: -1.00 -31.41 342.22 -7.11 -38.52 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -4.89 Total: 13.32 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -1.47 Total: -7.11 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: 0.21 Total: -36.15 kcal Atomic # 8 Polarization: -28.59 SS G_CDS: -1.10 Total: -29.69 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.41 -7.11 -38.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119763651.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.269 kcal (2) G-P(sol) polarization free energy of solvation -31.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds