Wall clock time and date at job start Tue Mar 31 2020 06:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34224 * 117.00125 * 2 1 4 4 O 1.20826 * 120.00184 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00315 * 179.97438 * 3 2 1 6 6 C 1.52997 * 109.47342 * 155.00021 * 5 3 2 7 7 N 1.46902 * 109.46927 * 34.99556 * 5 3 2 8 8 C 1.46905 * 110.99800 * 60.00311 * 7 5 3 9 9 C 1.53000 * 109.47234 * 179.97438 * 8 7 5 10 10 H 1.08989 * 109.46804 * 59.99859 * 9 8 7 11 11 O 1.42898 * 109.46946 * 299.99793 * 9 8 7 12 12 C 1.50695 * 109.46861 * 179.97438 * 9 8 7 13 13 H 1.08002 * 120.00407 * 0.02562 * 12 9 8 14 14 C 1.37882 * 119.99561 * 179.97438 * 12 9 8 15 15 N 1.31504 * 120.00353 * 0.02562 * 14 12 9 16 16 Si 1.86809 * 119.99803 * 179.97438 * 14 12 9 17 17 H 1.48499 * 109.46966 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47045 * 119.99866 * 16 14 12 19 19 H 1.48501 * 109.47145 * 240.00221 * 16 14 12 20 20 C 1.50706 * 109.47294 * 275.00238 * 5 3 2 21 21 C 1.38233 * 120.00109 * 119.72127 * 20 5 3 22 22 C 1.38238 * 119.99754 * 179.76611 * 21 20 5 23 23 C 1.38234 * 120.00016 * 0.50732 * 22 21 20 24 24 C 1.38238 * 120.00063 * 359.74632 * 23 22 21 25 25 C 1.38235 * 120.00108 * 0.02562 * 24 23 22 26 26 H 1.08993 * 109.47406 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46775 * 300.00271 * 1 2 3 28 28 H 1.09000 * 109.47059 * 60.00028 * 1 2 3 29 29 H 1.09000 * 109.47140 * 180.02562 * 6 5 3 30 30 H 1.09001 * 109.47230 * 299.99432 * 6 5 3 31 31 H 1.09001 * 109.47375 * 60.00270 * 6 5 3 32 32 H 1.00898 * 110.99915 * 183.95162 * 7 5 3 33 33 H 1.08993 * 109.47004 * 300.00108 * 8 7 5 34 34 H 1.09002 * 109.47091 * 59.99861 * 8 7 5 35 35 H 0.96705 * 114.00390 * 300.00392 * 11 9 8 36 36 H 0.96997 * 120.00566 * 179.97438 * 15 14 12 37 37 H 1.08004 * 119.99934 * 0.02562 * 21 20 5 38 38 H 1.07999 * 119.99924 * 180.23621 * 22 21 20 39 39 H 1.08001 * 120.00318 * 179.72031 * 23 22 21 40 40 H 1.08000 * 120.00578 * 179.97438 * 24 23 22 41 41 H 1.07999 * 120.00165 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0074 2.6069 -0.6091 7 7 4.1150 0.1673 -0.7933 8 6 3.6406 0.2296 -2.1822 9 6 4.2323 -0.9368 -2.9761 10 1 3.9179 -1.8786 -2.5267 11 8 5.6586 -0.8519 -2.9557 12 6 3.7451 -0.8731 -4.4007 13 1 3.0803 -0.0798 -4.7092 14 6 4.1490 -1.8271 -5.3107 15 7 4.9589 -2.7927 -4.9352 16 14 3.5445 -1.7486 -7.0765 17 1 2.6488 -0.5757 -7.2414 18 1 4.7063 -1.6174 -7.9920 19 1 2.7974 -2.9907 -7.3996 20 6 4.0739 1.1777 1.4163 21 6 4.9190 0.1454 1.7782 22 6 5.3885 0.0591 3.0756 23 6 5.0045 0.9992 4.0135 24 6 4.1552 2.0285 3.6528 25 6 3.6895 2.1176 2.3543 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 5.0960 2.6638 -0.6091 30 1 3.6404 2.6772 -1.6331 31 1 3.6004 3.4287 -0.0200 32 1 5.1233 0.1602 -0.7556 33 1 2.5527 0.1654 -2.1978 34 1 3.9554 1.1714 -2.6318 35 1 6.0098 -0.0373 -3.3408 36 1 5.2427 -3.4641 -5.5752 37 1 5.2158 -0.5913 1.0464 38 1 6.0517 -0.7452 3.3574 39 1 5.3676 0.9292 5.0282 40 1 3.8548 2.7628 4.3856 41 1 3.0257 2.9215 2.0726 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119763651.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:26 Heat of formation + Delta-G solvation = -123.060516 kcal Electronic energy + Delta-G solvation = -24281.617044 eV Core-core repulsion = 20739.980206 eV Total energy + Delta-G solvation = -3541.636838 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.10865 -40.16827 -38.57188 -37.66568 -36.70960 -34.24944 -32.88276 -31.81025 -30.32079 -29.25419 -28.94551 -26.51767 -25.25480 -23.58280 -23.13205 -22.27944 -20.87517 -19.16147 -18.60444 -18.47857 -17.56386 -17.16753 -16.68549 -16.53756 -16.19992 -16.09629 -15.66453 -15.19479 -14.92879 -14.72547 -14.52581 -14.31099 -14.09245 -14.05391 -13.56144 -13.28455 -13.17575 -13.11489 -12.88902 -12.86523 -12.66730 -12.53797 -12.15516 -12.02881 -11.85099 -11.78415 -11.50231 -11.05678 -10.70789 -10.19737 -9.82380 -9.74000 -9.43450 -8.13301 -6.38732 0.32001 0.50609 1.04189 1.39496 1.41478 1.52828 1.74185 2.38223 2.82502 2.99598 3.13278 3.48280 3.71565 3.88589 4.09545 4.17925 4.22227 4.24733 4.27205 4.31461 4.36918 4.46387 4.54070 4.57516 4.63139 4.67916 4.74634 4.95948 5.02819 5.09085 5.17808 5.29881 5.50808 5.57441 5.62875 5.64803 5.72709 5.92117 6.07141 6.10077 6.36094 6.66094 6.73666 7.34209 7.55927 8.91360 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.019630 B = 0.004477 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.078981 B = 6252.538471 C = 6972.784744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.349 6.349 3 C 0.483 3.517 4 O -0.531 6.531 5 C 0.164 3.836 6 C -0.164 4.164 7 N -0.661 5.661 8 C 0.051 3.949 9 C 0.242 3.758 10 H 0.026 0.974 11 O -0.573 6.573 12 C -0.588 4.588 13 H 0.054 0.946 14 C 0.031 3.969 15 N -0.895 5.895 16 Si 0.956 3.044 17 H -0.267 1.267 18 H -0.277 1.277 19 H -0.279 1.279 20 C -0.093 4.093 21 C -0.103 4.103 22 C -0.124 4.124 23 C -0.113 4.113 24 C -0.122 4.122 25 C -0.123 4.123 26 H 0.125 0.875 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.087 0.913 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.360 0.640 33 H 0.051 0.949 34 H 0.035 0.965 35 H 0.355 0.645 36 H 0.262 0.738 37 H 0.129 0.871 38 H 0.144 0.856 39 H 0.152 0.848 40 H 0.148 0.852 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.946 9.098 16.304 18.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.264 6.264 3 C 0.327 3.673 4 O -0.420 6.420 5 C 0.071 3.929 6 C -0.222 4.222 7 N -0.296 5.296 8 C -0.078 4.078 9 C 0.184 3.816 10 H 0.044 0.956 11 O -0.377 6.377 12 C -0.626 4.626 13 H 0.073 0.927 14 C -0.172 4.172 15 N -0.532 5.532 16 Si 0.781 3.219 17 H -0.191 1.191 18 H -0.203 1.203 19 H -0.205 1.205 20 C -0.094 4.094 21 C -0.121 4.121 22 C -0.142 4.142 23 C -0.131 4.131 24 C -0.140 4.140 25 C -0.141 4.141 26 H 0.143 0.857 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.106 0.894 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.182 0.818 33 H 0.070 0.930 34 H 0.053 0.947 35 H 0.199 0.801 36 H 0.071 0.929 37 H 0.147 0.853 38 H 0.162 0.838 39 H 0.170 0.830 40 H 0.165 0.835 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.643 8.165 16.738 18.810 hybrid contribution -0.210 1.057 -1.911 2.194 sum -2.853 9.222 14.827 17.692 Atomic orbital electron populations 1.23558 0.75435 1.05506 1.02428 1.86677 1.24384 1.32669 1.82651 1.23698 0.91747 0.81250 0.70642 1.90596 1.67241 1.36960 1.47240 1.19586 0.86469 0.92801 0.94024 1.22395 1.03031 0.95463 1.01327 1.60595 1.15598 1.42117 1.11330 1.22560 0.99114 0.98856 0.87254 1.19088 0.78313 0.92296 0.91918 0.95580 1.86527 1.23294 1.44325 1.83554 1.21997 1.31227 1.12539 0.96840 0.92734 1.25816 0.94181 0.94315 1.02891 1.70204 1.33024 1.13988 1.35962 0.85562 0.78302 0.78177 0.79825 1.19088 1.20276 1.20492 1.19335 1.00251 0.97599 0.92188 1.21227 0.96415 0.96862 0.97576 1.21484 1.00177 0.99958 0.92597 1.21568 0.96946 0.93997 1.00598 1.21383 0.97790 0.99344 0.95487 1.21134 1.00391 0.98523 0.94084 0.85721 0.91171 0.92334 0.89386 0.92326 0.90215 0.81782 0.93010 0.94699 0.80065 0.92923 0.85313 0.83820 0.83038 0.83472 0.86273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 10.56 113.37 1.20 1.82 16 2 O -0.35 -12.10 9.62 -51.36 -0.49 -12.60 16 3 C 0.48 16.68 5.16 71.24 0.37 17.04 16 4 O -0.53 -19.13 15.84 21.96 0.35 -18.78 16 5 C 0.16 5.11 0.76 2.04 0.00 5.12 16 6 C -0.16 -4.57 7.58 71.98 0.55 -4.02 16 7 N -0.66 -23.24 4.86 -477.63 -2.32 -25.57 16 8 C 0.05 2.10 4.60 86.30 0.40 2.50 16 9 C 0.24 12.19 3.10 29.85 0.09 12.28 16 10 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 11 O -0.57 -28.21 12.07 -148.98 -1.80 -30.01 16 12 C -0.59 -32.14 8.76 25.60 0.22 -31.91 16 13 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 14 C 0.03 1.72 5.40 84.66 0.46 2.17 16 15 N -0.89 -52.90 12.84 21.45 0.28 -52.62 16 16 Si 0.96 43.15 29.54 68.60 2.03 45.18 16 17 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 18 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 19 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 20 C -0.09 -2.58 4.76 -19.86 -0.09 -2.67 16 21 C -0.10 -2.70 9.14 22.27 0.20 -2.50 16 22 C -0.12 -2.58 10.05 22.27 0.22 -2.36 16 23 C -0.11 -2.00 10.05 22.27 0.22 -1.78 16 24 C -0.12 -2.33 10.05 22.27 0.22 -2.11 16 25 C -0.12 -2.99 8.82 22.27 0.20 -2.79 16 26 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 27 H 0.07 1.62 8.13 -2.39 -0.02 1.60 16 28 H 0.06 1.54 8.13 -2.39 -0.02 1.52 16 29 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.06 1.77 6.40 -2.39 -0.02 1.76 16 31 H 0.08 2.08 7.12 -2.39 -0.02 2.07 16 32 H 0.36 12.12 6.96 -89.70 -0.62 11.49 16 33 H 0.05 2.26 6.64 -2.39 -0.02 2.24 16 34 H 0.03 1.37 6.30 -2.39 -0.02 1.35 16 35 H 0.35 15.21 9.04 -74.05 -0.67 14.54 16 36 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 37 H 0.13 3.68 6.41 -2.91 -0.02 3.67 16 38 H 0.14 2.35 8.06 -2.91 -0.02 2.32 16 39 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 40 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16 41 H 0.12 2.90 7.58 -2.91 -0.02 2.88 16 Total: -1.00 -67.72 342.22 2.06 -65.66 By element: Atomic # 1 Polarization: 38.17 SS G_CDS: -0.24 Total: 37.93 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: 4.26 Total: -9.20 kcal Atomic # 7 Polarization: -76.14 SS G_CDS: -2.05 Total: -78.19 kcal Atomic # 8 Polarization: -59.44 SS G_CDS: -1.94 Total: -61.38 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -67.72 2.06 -65.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119763651.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.396 kcal (2) G-P(sol) polarization free energy of solvation -67.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds