Wall clock time and date at job start Tue Mar 31 2020 06:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00369 * 2 1 4 4 C 1.53000 * 109.47694 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46764 * 65.00130 * 4 3 2 6 6 C 1.36898 * 119.99967 * 264.68513 * 5 4 3 7 7 H 1.08003 * 120.00298 * 136.97496 * 6 5 4 8 8 C 1.39025 * 120.00140 * 316.97132 * 6 5 4 9 9 N 1.31378 * 119.99738 * 343.68321 * 8 6 5 10 10 Si 1.86799 * 120.00241 * 163.68242 * 8 6 5 11 11 H 1.48497 * 109.47045 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47275 * 119.99970 * 10 8 6 13 13 H 1.48501 * 109.47202 * 239.99948 * 10 8 6 14 14 C 1.34780 * 120.00045 * 84.68066 * 5 4 3 15 15 O 1.21620 * 119.99996 * 4.67535 * 14 5 4 16 16 C 1.47490 * 119.99945 * 184.67127 * 14 5 4 17 17 C 1.39825 * 120.09645 * 323.92727 * 16 14 5 18 18 C 1.37668 * 119.90301 * 180.24997 * 17 16 14 19 19 C 1.39021 * 120.09384 * 359.51477 * 18 17 16 20 20 O 1.35720 * 119.90799 * 180.27499 * 19 18 17 21 21 C 1.42907 * 116.99229 * 0.02562 * 20 19 18 22 22 C 1.38991 * 120.19387 * 0.25703 * 19 18 17 23 23 C 1.50699 * 119.95678 * 180.02562 * 22 19 18 24 24 C 1.37712 * 120.09183 * 359.97438 * 22 19 18 25 25 H 1.09004 * 109.47019 * 60.00035 * 1 2 3 26 26 H 1.08994 * 109.47049 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46937 * 299.99734 * 1 2 3 28 28 H 1.09003 * 109.46592 * 59.99684 * 3 2 1 29 29 H 1.09001 * 109.46943 * 300.00216 * 3 2 1 30 30 H 1.08998 * 109.46830 * 305.00542 * 4 3 2 31 31 H 1.08994 * 109.47411 * 184.99881 * 4 3 2 32 32 H 0.97005 * 120.00305 * 179.97438 * 9 8 6 33 33 H 1.07995 * 120.04339 * 0.03663 * 17 16 14 34 34 H 1.08001 * 119.95006 * 179.79123 * 18 17 16 35 35 H 1.08998 * 109.46728 * 179.97438 * 21 20 19 36 36 H 1.08995 * 109.47073 * 299.99350 * 21 20 19 37 37 H 1.09000 * 109.47396 * 60.00161 * 21 20 19 38 38 H 1.08994 * 109.47561 * 89.99214 * 23 22 19 39 39 H 1.09003 * 109.46894 * 210.00126 * 23 22 19 40 40 H 1.09002 * 109.46630 * 329.99438 * 23 22 19 41 41 H 1.07998 * 120.04519 * 180.02562 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.2026 -0.7852 -1.3034 7 1 3.8559 -1.3583 -2.1507 8 6 4.8784 -1.4178 -0.2662 9 7 5.5740 -0.7085 0.5935 10 14 4.7975 -3.2761 -0.0948 11 1 3.9556 -3.8372 -1.1818 12 1 6.1673 -3.8420 -0.1881 13 1 4.2057 -3.6266 1.2213 14 6 4.1601 1.3213 -2.3507 15 8 4.0421 2.5299 -2.2834 16 6 4.5039 0.6843 -3.6357 17 6 5.3378 -0.4377 -3.6612 18 6 5.6604 -1.0260 -4.8633 19 6 5.1500 -0.5121 -6.0500 20 8 5.4660 -1.0985 -7.2325 21 6 6.3262 -2.2385 -7.1819 22 6 4.3169 0.6002 -6.0290 23 6 3.7662 1.1524 -7.3185 24 6 3.9930 1.1977 -4.8312 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6886 1.8463 0.8900 29 1 1.6887 1.8464 -0.8900 30 1 3.8508 0.5685 0.8426 31 1 3.9785 2.1765 0.0902 32 1 6.0453 -1.1497 1.3175 33 1 5.7311 -0.8401 -2.7394 34 1 6.3071 -1.8907 -4.8841 35 1 6.4979 -2.6092 -8.1924 36 1 7.2778 -1.9558 -6.7317 37 1 5.8588 -3.0201 -6.5830 38 1 2.8148 0.6706 -7.5432 39 1 3.6146 2.2272 -7.2180 40 1 4.4713 0.9590 -8.1269 41 1 3.3452 2.0617 -4.8157 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123898713.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:06 Heat of formation + Delta-G solvation = -84.290548 kcal Electronic energy + Delta-G solvation = -24256.436032 eV Core-core repulsion = 20716.480386 eV Total energy + Delta-G solvation = -3539.955646 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.93305 -38.70622 -37.14872 -36.37094 -34.74815 -32.44439 -31.62751 -30.05728 -28.91223 -27.44241 -26.29311 -25.68291 -24.85716 -22.92601 -21.29922 -21.18791 -19.08745 -17.63255 -17.26893 -16.28749 -15.79106 -15.57504 -15.43997 -15.22087 -14.62083 -14.37911 -14.09333 -13.92578 -13.65513 -13.29656 -13.21615 -12.98431 -12.54034 -12.11921 -11.95550 -11.82594 -11.74678 -11.56230 -11.32013 -11.17215 -11.09909 -11.01115 -10.73589 -10.55563 -10.35686 -10.25183 -10.04649 -9.13679 -8.97945 -8.50264 -8.28769 -7.55333 -7.44351 -6.36200 -4.05353 1.73766 1.94710 3.13222 3.24010 3.28310 3.52156 3.81599 4.12404 4.48273 4.49340 4.76907 5.08086 5.13763 5.21019 5.26278 5.40330 5.53496 5.64348 5.67610 5.72374 5.83168 5.91080 5.94010 5.98044 6.02457 6.06119 6.10792 6.24772 6.31233 6.33639 6.63463 6.69878 6.91589 7.01602 7.20627 7.24128 7.30545 7.46764 7.76601 7.81681 8.00687 8.37948 9.07496 9.48914 9.91601 10.67206 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.013701 B = 0.006044 C = 0.004900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.111673 B = 4631.241770 C = 5713.023773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.366 6.366 3 C 0.051 3.949 4 C 0.120 3.880 5 N -0.423 5.423 6 C -0.321 4.321 7 H 0.090 0.910 8 C 0.046 3.954 9 N -0.863 5.863 10 Si 0.911 3.089 11 H -0.267 1.267 12 H -0.283 1.283 13 H -0.279 1.279 14 C 0.515 3.485 15 O -0.606 6.606 16 C -0.125 4.125 17 C -0.030 4.030 18 C -0.225 4.225 19 C 0.127 3.873 20 O -0.319 6.319 21 C 0.028 3.972 22 C -0.141 4.141 23 C -0.096 4.096 24 C -0.045 4.045 25 H 0.032 0.968 26 H 0.077 0.923 27 H 0.030 0.970 28 H 0.040 0.960 29 H 0.041 0.959 30 H 0.108 0.892 31 H 0.072 0.928 32 H 0.269 0.731 33 H 0.162 0.838 34 H 0.124 0.876 35 H 0.093 0.907 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.573 -2.648 -8.139 8.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C -0.026 4.026 4 C -0.004 4.004 5 N -0.139 5.139 6 C -0.449 4.449 7 H 0.107 0.893 8 C -0.160 4.160 9 N -0.500 5.500 10 Si 0.737 3.263 11 H -0.191 1.191 12 H -0.209 1.209 13 H -0.204 1.204 14 C 0.305 3.695 15 O -0.493 6.493 16 C -0.128 4.128 17 C -0.048 4.048 18 C -0.243 4.243 19 C 0.081 3.919 20 O -0.233 6.233 21 C -0.067 4.067 22 C -0.142 4.142 23 C -0.153 4.153 24 C -0.064 4.064 25 H 0.050 0.950 26 H 0.096 0.904 27 H 0.049 0.951 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.125 0.875 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.180 0.820 34 H 0.142 0.858 35 H 0.112 0.888 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.463 -2.222 -8.072 8.727 hybrid contribution -0.148 -1.050 0.484 1.166 sum -2.610 -3.272 -7.588 8.666 Atomic orbital electron populations 1.22644 0.83367 1.01752 0.98856 1.88125 1.17436 1.27758 1.95049 1.23062 0.96527 0.84334 0.98726 1.21379 0.89046 0.99136 0.90808 1.43129 1.56118 1.07304 1.07362 1.19365 1.34994 0.82319 1.08265 0.89298 1.25356 0.94193 0.99724 0.96683 1.69895 1.27751 1.36357 1.15948 0.86123 0.77880 0.83374 0.78882 1.19081 1.20877 1.20428 1.18270 0.80310 0.85997 0.84972 1.90610 1.57933 1.14237 1.86526 1.19906 1.01445 0.97734 0.93754 1.22000 0.92807 0.91673 0.98357 1.21209 1.06716 1.04157 0.92245 1.18979 0.95518 0.93088 0.84266 1.85952 1.64756 1.43833 1.28769 1.22990 0.93391 0.87101 1.03216 1.18973 1.02385 0.96876 0.95925 1.20504 1.00423 1.00131 0.94230 1.20868 0.97417 0.98100 0.90059 0.94972 0.90418 0.95136 0.94165 0.94083 0.87456 0.90948 0.92063 0.82031 0.85820 0.88835 0.92761 0.92708 0.92064 0.92035 0.91721 0.85465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.61 16 2 O -0.37 -7.75 10.43 -35.23 -0.37 -8.12 16 3 C 0.05 1.06 6.24 37.16 0.23 1.29 16 4 C 0.12 2.86 5.30 -4.04 -0.02 2.83 16 5 N -0.42 -10.65 2.44 -116.01 -0.28 -10.93 16 6 C -0.32 -8.03 5.87 -15.00 -0.09 -8.12 16 7 H 0.09 2.23 6.49 -52.48 -0.34 1.88 16 8 C 0.05 1.15 4.93 -17.45 -0.09 1.06 16 9 N -0.86 -22.36 11.63 55.50 0.65 -21.72 16 10 Si 0.91 19.52 29.58 -169.99 -5.03 14.49 16 11 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 12 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 13 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 14 C 0.51 12.99 7.31 -12.49 -0.09 12.90 16 15 O -0.61 -16.36 16.49 5.26 0.09 -16.28 16 16 C -0.13 -2.80 5.45 -104.96 -0.57 -3.37 16 17 C -0.03 -0.62 7.78 -39.20 -0.31 -0.93 16 18 C -0.22 -3.98 9.01 -39.50 -0.36 -4.34 16 19 C 0.13 2.18 6.67 -39.01 -0.26 1.92 16 20 O -0.32 -4.77 9.52 -18.87 -0.18 -4.95 16 21 C 0.03 0.31 9.81 101.05 0.99 1.30 16 22 C -0.14 -2.46 5.89 -104.54 -0.62 -3.08 16 23 C -0.10 -1.34 9.78 36.01 0.35 -0.99 16 24 C -0.05 -0.89 9.25 -39.20 -0.36 -1.26 16 25 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.11 2.71 5.84 -51.93 -0.30 2.40 16 31 H 0.07 1.74 7.52 -51.93 -0.39 1.35 16 32 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 33 H 0.16 3.62 5.71 -52.49 -0.30 3.32 16 34 H 0.12 1.86 6.28 -52.49 -0.33 1.53 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.05 0.56 7.65 -51.93 -0.40 0.16 16 37 H 0.05 0.57 7.65 -51.93 -0.40 0.18 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.78 8.08 -51.93 -0.42 0.36 16 40 H 0.06 0.86 7.52 -51.93 -0.39 0.47 16 41 H 0.13 2.42 8.02 -52.49 -0.42 2.00 16 LS Contribution 341.78 15.07 5.15 5.15 Total: -1.00 -30.06 341.78 -5.83 -35.89 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -5.78 Total: 5.62 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -0.07 Total: 0.83 kcal Atomic # 7 Polarization: -33.02 SS G_CDS: 0.36 Total: -32.65 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: -0.46 Total: -29.34 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.03 Total: 14.49 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.06 -5.83 -35.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123898713.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.400 kcal (2) G-P(sol) polarization free energy of solvation -30.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds