Wall clock time and date at job start Tue Mar 31 2020 06:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00369 * 2 1 4 4 C 1.53000 * 109.47694 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46764 * 65.00130 * 4 3 2 6 6 C 1.36898 * 119.99967 * 264.68513 * 5 4 3 7 7 H 1.08003 * 120.00298 * 136.97496 * 6 5 4 8 8 C 1.39025 * 120.00140 * 316.97132 * 6 5 4 9 9 N 1.31378 * 119.99738 * 343.68321 * 8 6 5 10 10 Si 1.86799 * 120.00241 * 163.68242 * 8 6 5 11 11 H 1.48497 * 109.47045 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47275 * 119.99970 * 10 8 6 13 13 H 1.48501 * 109.47202 * 239.99948 * 10 8 6 14 14 C 1.34780 * 120.00045 * 84.68066 * 5 4 3 15 15 O 1.21620 * 119.99996 * 4.67535 * 14 5 4 16 16 C 1.47490 * 119.99945 * 184.67127 * 14 5 4 17 17 C 1.39825 * 120.09645 * 323.92727 * 16 14 5 18 18 C 1.37668 * 119.90301 * 180.24997 * 17 16 14 19 19 C 1.39021 * 120.09384 * 359.51477 * 18 17 16 20 20 O 1.35720 * 119.90799 * 180.27499 * 19 18 17 21 21 C 1.42907 * 116.99229 * 0.02562 * 20 19 18 22 22 C 1.38991 * 120.19387 * 0.25703 * 19 18 17 23 23 C 1.50699 * 119.95678 * 180.02562 * 22 19 18 24 24 C 1.37712 * 120.09183 * 359.97438 * 22 19 18 25 25 H 1.09004 * 109.47019 * 60.00035 * 1 2 3 26 26 H 1.08994 * 109.47049 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46937 * 299.99734 * 1 2 3 28 28 H 1.09003 * 109.46592 * 59.99684 * 3 2 1 29 29 H 1.09001 * 109.46943 * 300.00216 * 3 2 1 30 30 H 1.08998 * 109.46830 * 305.00542 * 4 3 2 31 31 H 1.08994 * 109.47411 * 184.99881 * 4 3 2 32 32 H 0.97005 * 120.00305 * 179.97438 * 9 8 6 33 33 H 1.07995 * 120.04339 * 0.03663 * 17 16 14 34 34 H 1.08001 * 119.95006 * 179.79123 * 18 17 16 35 35 H 1.08998 * 109.46728 * 179.97438 * 21 20 19 36 36 H 1.08995 * 109.47073 * 299.99350 * 21 20 19 37 37 H 1.09000 * 109.47396 * 60.00161 * 21 20 19 38 38 H 1.08994 * 109.47561 * 89.99214 * 23 22 19 39 39 H 1.09003 * 109.46894 * 210.00126 * 23 22 19 40 40 H 1.09002 * 109.46630 * 329.99438 * 23 22 19 41 41 H 1.07998 * 120.04519 * 180.02562 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.2026 -0.7852 -1.3034 7 1 3.8559 -1.3583 -2.1507 8 6 4.8784 -1.4178 -0.2662 9 7 5.5740 -0.7085 0.5935 10 14 4.7975 -3.2761 -0.0948 11 1 3.9556 -3.8372 -1.1818 12 1 6.1673 -3.8420 -0.1881 13 1 4.2057 -3.6266 1.2213 14 6 4.1601 1.3213 -2.3507 15 8 4.0421 2.5299 -2.2834 16 6 4.5039 0.6843 -3.6357 17 6 5.3378 -0.4377 -3.6612 18 6 5.6604 -1.0260 -4.8633 19 6 5.1500 -0.5121 -6.0500 20 8 5.4660 -1.0985 -7.2325 21 6 6.3262 -2.2385 -7.1819 22 6 4.3169 0.6002 -6.0290 23 6 3.7662 1.1524 -7.3185 24 6 3.9930 1.1977 -4.8312 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6886 1.8463 0.8900 29 1 1.6887 1.8464 -0.8900 30 1 3.8508 0.5685 0.8426 31 1 3.9785 2.1765 0.0902 32 1 6.0453 -1.1497 1.3175 33 1 5.7311 -0.8401 -2.7394 34 1 6.3071 -1.8907 -4.8841 35 1 6.4979 -2.6092 -8.1924 36 1 7.2778 -1.9558 -6.7317 37 1 5.8588 -3.0201 -6.5830 38 1 2.8148 0.6706 -7.5432 39 1 3.6146 2.2272 -7.2180 40 1 4.4713 0.9590 -8.1269 41 1 3.3452 2.0617 -4.8157 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123898713.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:05 Heat of formation + Delta-G solvation = -102.726186 kcal Electronic energy + Delta-G solvation = -24257.235461 eV Core-core repulsion = 20716.480386 eV Total energy + Delta-G solvation = -3540.755075 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.39278 -40.37380 -38.68114 -37.85022 -36.66826 -33.83581 -33.54121 -31.63786 -30.49528 -28.45098 -27.63667 -27.13547 -26.68569 -24.53773 -22.85900 -22.67628 -20.93525 -19.18002 -18.78043 -17.93332 -17.31208 -17.13841 -16.74657 -16.64433 -16.39053 -16.06837 -15.72235 -15.35399 -15.22649 -14.80715 -14.63460 -14.28447 -14.00382 -13.72186 -13.43280 -13.31418 -13.01252 -12.88940 -12.86678 -12.80389 -12.60525 -12.52670 -12.46876 -12.04822 -11.90846 -11.74964 -11.66298 -11.00304 -10.56341 -10.40163 -9.76614 -9.37984 -8.98973 -8.26307 -6.00788 0.20402 0.47331 1.42295 1.48683 1.59880 2.06643 2.33551 2.38658 2.82147 2.94096 2.99511 3.26228 3.89715 3.95164 4.14705 4.23356 4.32795 4.41927 4.44381 4.45408 4.50917 4.55952 4.57240 4.59889 4.67962 4.72991 4.79001 4.80873 4.87178 4.89101 5.02209 5.29077 5.33773 5.43434 5.48063 5.54309 5.72783 5.82127 6.03022 6.38629 6.43975 6.47213 7.14309 7.56284 7.99481 8.78343 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.013701 B = 0.006044 C = 0.004900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.111673 B = 4631.241770 C = 5713.023773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.064 3.936 4 C 0.118 3.882 5 N -0.431 5.431 6 C -0.323 4.323 7 H 0.086 0.914 8 C 0.010 3.990 9 N -0.895 5.895 10 Si 0.973 3.027 11 H -0.261 1.261 12 H -0.274 1.274 13 H -0.281 1.281 14 C 0.501 3.499 15 O -0.638 6.638 16 C -0.159 4.159 17 C -0.041 4.041 18 C -0.219 4.219 19 C 0.138 3.862 20 O -0.320 6.320 21 C 0.016 3.984 22 C -0.140 4.140 23 C -0.093 4.093 24 C -0.051 4.051 25 H 0.038 0.962 26 H 0.094 0.906 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.030 0.970 30 H 0.091 0.909 31 H 0.058 0.942 32 H 0.271 0.729 33 H 0.140 0.860 34 H 0.152 0.848 35 H 0.126 0.874 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.985 -4.489 -10.115 11.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.317 6.317 3 C -0.014 4.014 4 C -0.006 4.006 5 N -0.146 5.146 6 C -0.451 4.451 7 H 0.104 0.896 8 C -0.193 4.193 9 N -0.533 5.533 10 Si 0.797 3.203 11 H -0.185 1.185 12 H -0.200 1.200 13 H -0.207 1.207 14 C 0.292 3.708 15 O -0.527 6.527 16 C -0.162 4.162 17 C -0.060 4.060 18 C -0.238 4.238 19 C 0.092 3.908 20 O -0.233 6.233 21 C -0.079 4.079 22 C -0.141 4.141 23 C -0.150 4.150 24 C -0.070 4.070 25 H 0.056 0.944 26 H 0.113 0.887 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.049 0.951 30 H 0.109 0.891 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.158 0.842 34 H 0.170 0.830 35 H 0.144 0.856 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.880 -4.081 -10.060 11.231 hybrid contribution 0.002 -0.507 0.980 1.103 sum -2.878 -4.588 -9.080 10.572 Atomic orbital electron populations 1.22893 0.80550 1.03408 1.00268 1.88054 1.20553 1.27725 1.95318 1.22824 0.94293 0.84691 0.99560 1.21339 0.91455 0.97803 0.89994 1.43340 1.55978 1.07611 1.07709 1.19423 1.35071 0.82205 1.08431 0.89625 1.26056 0.93565 1.03551 0.96118 1.69991 1.28642 1.38036 1.16593 0.85186 0.78135 0.78469 0.78548 1.18467 1.19991 1.20702 1.18856 0.79883 0.85854 0.86186 1.90552 1.59519 1.15439 1.87237 1.19835 1.03923 0.99355 0.93129 1.21747 0.93485 0.91918 0.98861 1.21398 1.06570 1.04511 0.91280 1.19045 0.94282 0.92589 0.84914 1.85971 1.65216 1.44938 1.27195 1.23380 0.92970 0.85802 1.05705 1.19331 1.01727 0.96626 0.96437 1.20567 1.01126 1.00817 0.92443 1.20910 0.97630 0.98314 0.90172 0.94359 0.88710 0.92831 0.91189 0.95149 0.89077 0.92368 0.91895 0.84221 0.83009 0.85568 0.91992 0.92049 0.90650 0.90988 0.90545 0.85581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 11.01 113.37 1.25 2.01 16 2 O -0.40 -16.81 10.43 -148.98 -1.55 -18.36 16 3 C 0.06 2.69 6.24 71.98 0.45 3.14 16 4 C 0.12 5.85 5.30 86.38 0.46 6.31 16 5 N -0.43 -22.63 2.44 -639.18 -1.56 -24.19 16 6 C -0.32 -16.61 5.87 84.09 0.49 -16.11 16 7 H 0.09 4.39 6.49 -2.91 -0.02 4.37 16 8 C 0.01 0.49 4.93 84.95 0.42 0.91 16 9 N -0.90 -47.67 11.63 21.68 0.25 -47.42 16 10 Si 0.97 40.08 29.58 68.60 2.03 42.11 16 11 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 12 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 13 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 14 C 0.50 26.51 7.31 86.68 0.63 27.14 16 15 O -0.64 -36.21 16.49 -4.10 -0.07 -36.27 16 16 C -0.16 -7.33 5.45 -20.08 -0.11 -7.44 16 17 C -0.04 -1.75 7.78 22.52 0.18 -1.57 16 18 C -0.22 -7.44 9.01 22.32 0.20 -7.24 16 19 C 0.14 4.42 6.67 22.64 0.15 4.57 16 20 O -0.32 -8.40 9.52 -90.42 -0.86 -9.26 16 21 C 0.02 0.28 9.81 113.37 1.11 1.39 16 22 C -0.14 -4.69 5.89 -19.81 -0.12 -4.81 16 23 C -0.09 -2.35 9.78 71.24 0.70 -1.65 16 24 C -0.05 -2.03 9.25 22.52 0.21 -1.82 16 25 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 26 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 27 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 29 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.09 4.80 5.84 -2.39 -0.01 4.79 16 31 H 0.06 2.97 7.52 -2.39 -0.02 2.95 16 32 H 0.27 13.60 8.31 -92.70 -0.77 12.83 16 33 H 0.14 6.47 5.71 -2.91 -0.02 6.45 16 34 H 0.15 4.17 6.28 -2.91 -0.02 4.15 16 35 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.06 1.04 7.65 -2.39 -0.02 1.02 16 37 H 0.06 1.04 7.65 -2.39 -0.02 1.03 16 38 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.07 1.67 8.08 -2.39 -0.02 1.65 16 40 H 0.08 1.76 7.52 -2.39 -0.02 1.75 16 41 H 0.13 4.90 8.02 -2.91 -0.02 4.88 16 Total: -1.00 -66.96 341.78 5.29 -61.67 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: 1.03 Total: 26.90 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: 6.02 Total: 4.82 kcal Atomic # 7 Polarization: -70.30 SS G_CDS: -1.31 Total: -71.61 kcal Atomic # 8 Polarization: -61.41 SS G_CDS: -2.48 Total: -63.90 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.03 Total: 42.11 kcal Total: -66.96 5.29 -61.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123898713.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.052 kcal (2) G-P(sol) polarization free energy of solvation -66.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds