Wall clock time and date at job start Tue Mar 31 2020 07:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47054 * 2 1 4 4 C 1.53002 * 109.47054 * 179.97438 * 3 2 1 5 5 N 1.46493 * 109.47098 * 180.02562 * 4 3 2 6 6 C 1.36911 * 120.00207 * 269.99904 * 5 4 3 7 7 H 1.07995 * 119.99926 * 144.74226 * 6 5 4 8 8 C 1.39025 * 119.99525 * 324.74811 * 6 5 4 9 9 N 1.31386 * 119.99231 * 155.26356 * 8 6 5 10 10 Si 1.86795 * 120.00217 * 335.26346 * 8 6 5 11 11 H 1.48499 * 109.47113 * 95.33382 * 10 8 6 12 12 H 1.48503 * 109.46863 * 215.33280 * 10 8 6 13 13 H 1.48497 * 109.47078 * 335.33020 * 10 8 6 14 14 C 1.34782 * 120.00038 * 90.00002 * 5 4 3 15 15 O 1.21620 * 120.00069 * 5.69861 * 14 5 4 16 16 C 1.47436 * 119.99875 * 185.69899 * 14 5 4 17 17 C 1.39871 * 120.17418 * 321.38998 * 16 14 5 18 18 C 1.37731 * 119.99575 * 180.27887 * 17 16 14 19 19 C 1.38551 * 120.34744 * 359.75132 * 18 17 16 20 20 C 1.38450 * 120.35098 * 359.97438 * 19 18 17 21 21 O 1.36003 * 120.00378 * 180.02562 * 20 19 18 22 22 C 1.42895 * 117.00164 * 359.97438 * 21 20 19 23 23 C 1.39155 * 119.99560 * 0.02562 * 20 19 18 24 24 O 1.35746 * 120.17360 * 179.97438 * 23 20 19 25 25 H 1.08997 * 109.46921 * 299.99673 * 1 2 3 26 26 H 1.08996 * 109.47031 * 60.00069 * 1 2 3 27 27 H 1.08998 * 109.46815 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47214 * 240.00432 * 2 1 3 29 29 H 1.08995 * 109.47505 * 120.00157 * 2 1 3 30 30 H 1.08997 * 109.46989 * 60.00368 * 3 2 1 31 31 H 1.08996 * 109.47145 * 299.99862 * 3 2 1 32 32 H 1.08995 * 109.47234 * 59.99897 * 4 3 2 33 33 H 1.09007 * 109.46906 * 300.00455 * 4 3 2 34 34 H 0.97000 * 119.99193 * 179.97438 * 9 8 6 35 35 H 1.07997 * 119.99885 * 0.05078 * 17 16 14 36 36 H 1.08000 * 119.82598 * 179.72449 * 18 17 16 37 37 H 1.08007 * 119.82631 * 179.97438 * 19 18 17 38 38 H 1.09003 * 109.47790 * 179.97438 * 22 21 20 39 39 H 1.09006 * 109.47033 * 300.00351 * 22 21 20 40 40 H 1.09005 * 109.47249 * 59.99573 * 22 21 20 41 41 H 0.96701 * 113.99500 * 90.00015 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0013 6 6 4.2871 3.4695 -1.1841 7 1 4.0885 4.5276 -1.2696 8 6 4.7747 2.7630 -2.2777 9 7 4.5493 3.2006 -3.4958 10 14 5.7504 1.1919 -2.0150 11 1 4.8424 0.0217 -2.1219 12 1 6.8125 1.0903 -3.0479 13 1 6.3719 1.2147 -0.6665 14 6 4.2825 3.4587 1.1688 15 8 4.1795 2.8545 2.2192 16 6 4.6526 4.8859 1.1725 17 6 5.5141 5.3913 0.1933 18 6 5.8619 6.7239 0.2036 19 6 5.3586 7.5712 1.1775 20 6 4.5004 7.0874 2.1502 21 8 4.0101 7.9256 3.1025 22 6 4.4231 9.2921 3.0390 23 6 4.1394 5.7435 2.1534 24 8 3.2985 5.2652 3.1057 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 3.9338 0.9286 -0.8891 33 1 3.9330 0.9287 0.8909 34 1 4.8899 2.7078 -4.2588 35 1 5.9093 4.7359 -0.5686 36 1 6.5308 7.1103 -0.5511 37 1 5.6373 8.6147 1.1779 38 1 3.9607 9.8497 3.8534 39 1 5.5079 9.3484 3.1295 40 1 4.1155 9.7207 2.0851 41 1 2.3634 5.3112 2.8637 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148204942.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:58 Heat of formation + Delta-G solvation = -79.191795 kcal Electronic energy + Delta-G solvation = -24258.465609 eV Core-core repulsion = 20718.731062 eV Total energy + Delta-G solvation = -3539.734548 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.17767 -38.85991 -37.16255 -35.99563 -35.43285 -34.04199 -31.96932 -30.42147 -29.36343 -28.30583 -27.07936 -25.05917 -23.92703 -22.14332 -21.86352 -20.72453 -19.39725 -18.29934 -17.44731 -16.82316 -16.08358 -16.05722 -15.62598 -15.08175 -14.83057 -14.68831 -14.18388 -14.12608 -13.68210 -13.61255 -13.11534 -12.98864 -12.63808 -12.38854 -12.14607 -11.96444 -11.85050 -11.62279 -11.38768 -11.15619 -10.93793 -10.84239 -10.68869 -10.60394 -10.37297 -10.16664 -10.01254 -9.78172 -9.21240 -8.62987 -8.29409 -7.90925 -7.65493 -6.58383 -4.09912 1.41895 1.82570 2.99902 3.17172 3.26265 3.36554 3.66417 4.05127 4.19436 4.35646 4.66691 4.87240 5.04409 5.18109 5.26132 5.35747 5.38755 5.43363 5.50264 5.52755 5.72670 5.80693 5.88452 6.05433 6.11331 6.15426 6.21098 6.22431 6.25140 6.39515 6.49647 6.54459 6.76489 6.86677 6.91673 6.98031 7.12780 7.28078 7.53650 7.96871 8.17600 8.22161 8.85789 9.28094 9.62098 10.50203 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015490 B = 0.005749 C = 0.004623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.202749 B = 4868.990133 C = 6054.813223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.125 4.125 4 C 0.102 3.898 5 N -0.454 5.454 6 C -0.351 4.351 7 H 0.113 0.887 8 C 0.070 3.930 9 N -0.848 5.848 10 Si 0.868 3.132 11 H -0.272 1.272 12 H -0.287 1.287 13 H -0.260 1.260 14 C 0.516 3.484 15 O -0.575 6.575 16 C -0.086 4.086 17 C -0.083 4.083 18 C -0.110 4.110 19 C -0.188 4.188 20 C 0.078 3.922 21 O -0.312 6.312 22 C 0.028 3.972 23 C 0.113 3.887 24 O -0.470 6.470 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.276 0.724 35 H 0.161 0.839 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.095 0.905 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.767 5.651 4.509 7.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.163 4.163 4 C -0.021 4.021 5 N -0.174 5.174 6 C -0.478 4.478 7 H 0.130 0.870 8 C -0.139 4.139 9 N -0.483 5.483 10 Si 0.695 3.305 11 H -0.199 1.199 12 H -0.214 1.214 13 H -0.184 1.184 14 C 0.306 3.694 15 O -0.459 6.459 16 C -0.090 4.090 17 C -0.101 4.101 18 C -0.128 4.128 19 C -0.207 4.207 20 C 0.033 3.967 21 O -0.226 6.226 22 C -0.067 4.067 23 C 0.066 3.934 24 O -0.278 6.278 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.178 0.822 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.113 0.887 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -1.415 5.161 5.269 7.510 hybrid contribution 0.219 -0.363 -0.679 0.800 sum -1.197 4.798 4.590 6.747 Atomic orbital electron populations 1.21737 0.96135 1.00895 1.01750 1.21479 0.95612 0.97418 1.01631 1.21843 0.95862 0.96060 1.02577 1.21651 0.94106 0.84911 1.01387 1.43614 1.56477 1.11776 1.05530 1.19237 1.45214 0.96956 0.86389 0.86981 1.25258 0.96133 0.97907 0.94583 1.69796 1.40071 1.40339 0.98060 0.87083 0.80675 0.83457 0.79261 1.19902 1.21354 1.18376 1.17900 0.81077 0.86481 0.83974 1.90687 1.56119 1.67424 1.31648 1.20178 0.99870 0.94562 0.94382 1.21914 0.95744 0.95492 0.96979 1.20919 1.00096 0.93692 0.98084 1.21142 1.01726 1.00468 0.97376 1.19194 0.97502 0.89391 0.90654 1.86117 1.68190 1.19419 1.48870 1.22991 1.00268 0.80882 1.02573 1.17700 0.97375 0.87383 0.90940 1.84864 1.19067 1.84309 1.39551 0.92900 0.92773 0.93274 0.92276 0.92241 0.92097 0.91100 0.91613 0.91093 0.91347 0.82167 0.85593 0.85694 0.88672 0.92955 0.92938 0.76614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.91 37.16 0.37 -1.62 16 2 C -0.12 -1.95 5.93 -26.73 -0.16 -2.11 16 3 C -0.12 -2.39 5.54 -26.73 -0.15 -2.54 16 4 C 0.10 2.24 4.29 -4.04 -0.02 2.23 16 5 N -0.45 -10.81 2.20 -116.03 -0.26 -11.07 16 6 C -0.35 -8.66 7.00 -14.99 -0.10 -8.77 16 7 H 0.11 2.88 6.15 -52.49 -0.32 2.56 16 8 C 0.07 1.74 5.28 -17.45 -0.09 1.64 16 9 N -0.85 -22.05 13.96 55.50 0.77 -21.28 16 10 Si 0.87 19.67 25.12 -169.99 -4.27 15.41 16 11 H -0.27 -5.95 6.63 56.52 0.37 -5.58 16 12 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 13 H -0.26 -6.09 7.11 56.52 0.40 -5.68 16 14 C 0.52 12.48 7.15 -12.51 -0.09 12.40 16 15 O -0.57 -15.12 15.64 -11.15 -0.17 -15.30 16 16 C -0.09 -1.88 5.39 -104.86 -0.56 -2.44 16 17 C -0.08 -1.64 7.63 -39.16 -0.30 -1.94 16 18 C -0.11 -1.81 10.02 -39.65 -0.40 -2.21 16 19 C -0.19 -2.91 9.03 -39.39 -0.36 -3.26 16 20 C 0.08 1.36 6.69 -39.16 -0.26 1.10 16 21 O -0.31 -4.93 10.28 -34.28 -0.35 -5.28 16 22 C 0.03 0.30 9.81 101.05 0.99 1.29 16 23 C 0.11 2.29 6.70 -38.56 -0.26 2.03 16 24 O -0.47 -9.39 12.03 -44.98 -0.54 -9.93 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 32 H 0.07 1.47 3.15 -51.93 -0.16 1.30 16 33 H 0.07 1.57 7.35 -51.93 -0.38 1.19 16 34 H 0.28 6.74 8.31 -40.82 -0.34 6.40 16 35 H 0.16 3.40 5.93 -52.49 -0.31 3.09 16 36 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.13 1.51 6.27 -52.48 -0.33 1.18 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 40 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 41 H 0.38 5.97 9.06 45.56 0.41 6.38 16 LS Contribution 335.17 15.07 5.05 5.05 Total: -1.00 -30.50 335.17 -6.01 -36.52 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -4.86 Total: 10.10 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -1.39 Total: -4.22 kcal Atomic # 7 Polarization: -32.86 SS G_CDS: 0.52 Total: -32.35 kcal Atomic # 8 Polarization: -29.44 SS G_CDS: -1.07 Total: -30.51 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -4.27 Total: 15.41 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.50 -6.01 -36.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148204942.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.675 kcal (2) G-P(sol) polarization free energy of solvation -30.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds