Wall clock time and date at job start Tue Mar 31 2020 07:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47054 * 2 1 4 4 C 1.53002 * 109.47054 * 179.97438 * 3 2 1 5 5 N 1.46493 * 109.47098 * 180.02562 * 4 3 2 6 6 C 1.36911 * 120.00207 * 269.99904 * 5 4 3 7 7 H 1.07995 * 119.99926 * 144.74226 * 6 5 4 8 8 C 1.39025 * 119.99525 * 324.74811 * 6 5 4 9 9 N 1.31386 * 119.99231 * 155.26356 * 8 6 5 10 10 Si 1.86795 * 120.00217 * 335.26346 * 8 6 5 11 11 H 1.48499 * 109.47113 * 95.33382 * 10 8 6 12 12 H 1.48503 * 109.46863 * 215.33280 * 10 8 6 13 13 H 1.48497 * 109.47078 * 335.33020 * 10 8 6 14 14 C 1.34782 * 120.00038 * 90.00002 * 5 4 3 15 15 O 1.21620 * 120.00069 * 5.69861 * 14 5 4 16 16 C 1.47436 * 119.99875 * 185.69899 * 14 5 4 17 17 C 1.39871 * 120.17418 * 321.38998 * 16 14 5 18 18 C 1.37731 * 119.99575 * 180.27887 * 17 16 14 19 19 C 1.38551 * 120.34744 * 359.75132 * 18 17 16 20 20 C 1.38450 * 120.35098 * 359.97438 * 19 18 17 21 21 O 1.36003 * 120.00378 * 180.02562 * 20 19 18 22 22 C 1.42895 * 117.00164 * 359.97438 * 21 20 19 23 23 C 1.39155 * 119.99560 * 0.02562 * 20 19 18 24 24 O 1.35746 * 120.17360 * 179.97438 * 23 20 19 25 25 H 1.08997 * 109.46921 * 299.99673 * 1 2 3 26 26 H 1.08996 * 109.47031 * 60.00069 * 1 2 3 27 27 H 1.08998 * 109.46815 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47214 * 240.00432 * 2 1 3 29 29 H 1.08995 * 109.47505 * 120.00157 * 2 1 3 30 30 H 1.08997 * 109.46989 * 60.00368 * 3 2 1 31 31 H 1.08996 * 109.47145 * 299.99862 * 3 2 1 32 32 H 1.08995 * 109.47234 * 59.99897 * 4 3 2 33 33 H 1.09007 * 109.46906 * 300.00455 * 4 3 2 34 34 H 0.97000 * 119.99193 * 179.97438 * 9 8 6 35 35 H 1.07997 * 119.99885 * 0.05078 * 17 16 14 36 36 H 1.08000 * 119.82598 * 179.72449 * 18 17 16 37 37 H 1.08007 * 119.82631 * 179.97438 * 19 18 17 38 38 H 1.09003 * 109.47790 * 179.97438 * 22 21 20 39 39 H 1.09006 * 109.47033 * 300.00351 * 22 21 20 40 40 H 1.09005 * 109.47249 * 59.99573 * 22 21 20 41 41 H 0.96701 * 113.99500 * 90.00015 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0013 6 6 4.2871 3.4695 -1.1841 7 1 4.0885 4.5276 -1.2696 8 6 4.7747 2.7630 -2.2777 9 7 4.5493 3.2006 -3.4958 10 14 5.7504 1.1919 -2.0150 11 1 4.8424 0.0217 -2.1219 12 1 6.8125 1.0903 -3.0479 13 1 6.3719 1.2147 -0.6665 14 6 4.2825 3.4587 1.1688 15 8 4.1795 2.8545 2.2192 16 6 4.6526 4.8859 1.1725 17 6 5.5141 5.3913 0.1933 18 6 5.8619 6.7239 0.2036 19 6 5.3586 7.5712 1.1775 20 6 4.5004 7.0874 2.1502 21 8 4.0101 7.9256 3.1025 22 6 4.4231 9.2921 3.0390 23 6 4.1394 5.7435 2.1534 24 8 3.2985 5.2652 3.1057 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 3.9338 0.9286 -0.8891 33 1 3.9330 0.9287 0.8909 34 1 4.8899 2.7078 -4.2588 35 1 5.9093 4.7359 -0.5686 36 1 6.5308 7.1103 -0.5511 37 1 5.6373 8.6147 1.1779 38 1 3.9607 9.8497 3.8534 39 1 5.5079 9.3484 3.1295 40 1 4.1155 9.7207 2.0851 41 1 2.3634 5.3112 2.8637 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148204942.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:58 Heat of formation + Delta-G solvation = -98.600605 kcal Electronic energy + Delta-G solvation = -24259.307238 eV Core-core repulsion = 20718.731062 eV Total energy + Delta-G solvation = -3540.576177 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.65852 -40.46054 -38.57477 -37.46346 -37.17681 -35.61641 -33.86839 -31.88109 -30.67884 -29.78356 -28.11196 -26.94713 -25.41889 -23.61745 -23.27460 -22.14323 -21.09903 -19.91787 -18.90785 -18.48987 -17.70151 -17.52867 -16.96220 -16.59889 -16.24552 -16.15586 -15.87277 -15.72504 -15.14253 -14.88991 -14.68939 -14.54842 -14.32692 -13.97426 -13.47025 -13.31649 -13.16299 -13.15587 -12.93677 -12.80312 -12.24646 -12.17193 -12.11813 -11.98230 -11.81594 -11.75269 -11.64807 -11.47178 -11.04620 -10.49421 -9.81185 -9.73555 -9.06322 -8.52405 -6.05933 -0.05051 0.41499 1.16813 1.31102 1.41567 1.87556 2.16396 2.23042 2.63198 2.68326 3.03099 3.27524 3.86011 3.94372 4.02578 4.04954 4.20581 4.25163 4.31605 4.43700 4.45175 4.47319 4.51811 4.62890 4.73612 4.75640 4.81626 4.87049 4.91264 5.03249 5.19545 5.20819 5.32466 5.38383 5.42730 5.46038 5.54896 5.72455 6.04137 6.25003 6.33171 6.84029 6.92479 7.36799 7.73282 8.58967 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015490 B = 0.005749 C = 0.004623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.202749 B = 4868.990133 C = 6054.813223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.120 4.120 3 C -0.115 4.115 4 C 0.096 3.904 5 N -0.461 5.461 6 C -0.344 4.344 7 H 0.097 0.903 8 C 0.043 3.957 9 N -0.879 5.879 10 Si 0.909 3.091 11 H -0.257 1.257 12 H -0.279 1.279 13 H -0.276 1.276 14 C 0.511 3.489 15 O -0.606 6.606 16 C -0.120 4.120 17 C -0.099 4.099 18 C -0.100 4.100 19 C -0.169 4.169 20 C 0.082 3.918 21 O -0.329 6.329 22 C 0.015 3.985 23 C 0.092 3.908 24 O -0.487 6.487 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.281 0.719 35 H 0.139 0.861 36 H 0.160 0.840 37 H 0.171 0.829 38 H 0.119 0.881 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.612 7.073 4.605 8.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.159 4.159 3 C -0.153 4.153 4 C -0.027 4.027 5 N -0.180 5.180 6 C -0.471 4.471 7 H 0.115 0.885 8 C -0.163 4.163 9 N -0.514 5.514 10 Si 0.735 3.265 11 H -0.184 1.184 12 H -0.205 1.205 13 H -0.201 1.201 14 C 0.302 3.698 15 O -0.492 6.492 16 C -0.124 4.124 17 C -0.118 4.118 18 C -0.117 4.117 19 C -0.187 4.187 20 C 0.036 3.964 21 O -0.244 6.244 22 C -0.079 4.079 23 C 0.045 3.955 24 O -0.297 6.297 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.157 0.843 36 H 0.177 0.823 37 H 0.188 0.812 38 H 0.137 0.863 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -1.274 6.588 5.349 8.581 hybrid contribution 0.176 -0.620 -0.611 0.888 sum -1.097 5.968 4.738 7.698 Atomic orbital electron populations 1.21706 0.94033 1.02485 1.01871 1.21482 0.97451 0.94793 1.02132 1.21746 0.93803 0.98396 1.01388 1.21790 0.95989 0.84046 1.00843 1.43741 1.56599 1.12403 1.05281 1.19084 1.44967 0.96489 0.86562 0.88547 1.25603 0.96530 0.99874 0.94303 1.69824 1.41301 1.41721 0.98603 0.86428 0.79991 0.81798 0.78239 1.18351 1.20550 1.20133 1.18386 0.80243 0.87714 0.83496 1.90637 1.57568 1.68511 1.32500 1.20132 1.02149 0.93541 0.96565 1.21763 0.96523 0.97046 0.96430 1.21253 0.99640 0.92103 0.98740 1.21580 0.99459 1.02304 0.95400 1.19201 0.97186 0.88736 0.91236 1.86109 1.68352 1.21646 1.48248 1.23416 1.01633 0.78192 1.04658 1.17892 0.98008 0.88736 0.90820 1.84802 1.20168 1.84764 1.39969 0.92677 0.92819 0.90936 0.91961 0.91545 0.93001 0.92418 0.91836 0.91698 0.90843 0.84308 0.82279 0.81208 0.86258 0.91449 0.91239 0.75197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.63 9.91 71.98 0.71 -2.92 16 2 C -0.12 -3.72 5.93 30.60 0.18 -3.54 16 3 C -0.11 -4.48 5.54 30.60 0.17 -4.31 16 4 C 0.10 4.30 4.29 86.38 0.37 4.67 16 5 N -0.46 -22.73 2.20 -639.25 -1.41 -24.14 16 6 C -0.34 -17.49 7.00 84.09 0.59 -16.91 16 7 H 0.10 5.16 6.15 -2.91 -0.02 5.14 16 8 C 0.04 2.17 5.28 84.95 0.45 2.62 16 9 N -0.88 -46.09 13.96 21.68 0.30 -45.79 16 10 Si 0.91 40.77 25.12 68.60 1.72 42.49 16 11 H -0.26 -10.87 6.63 99.48 0.66 -10.21 16 12 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 13 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 14 C 0.51 25.75 7.15 86.67 0.62 26.37 16 15 O -0.61 -33.21 15.64 11.59 0.18 -33.03 16 16 C -0.12 -5.40 5.39 -20.02 -0.11 -5.50 16 17 C -0.10 -3.97 7.63 22.55 0.17 -3.80 16 18 C -0.10 -3.07 10.02 22.22 0.22 -2.85 16 19 C -0.17 -4.65 9.03 22.39 0.20 -4.45 16 20 C 0.08 2.74 6.69 22.54 0.15 2.89 16 21 O -0.33 -9.61 10.28 -79.68 -0.82 -10.43 16 22 C 0.02 0.25 9.81 113.37 1.11 1.37 16 23 C 0.09 3.77 6.70 22.93 0.15 3.92 16 24 O -0.49 -19.97 12.03 -65.81 -0.79 -20.76 16 25 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 29 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.06 2.86 3.15 -2.39 -0.01 2.85 16 33 H 0.06 2.96 7.35 -2.38 -0.02 2.94 16 34 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 35 H 0.14 6.11 5.93 -2.91 -0.02 6.09 16 36 H 0.16 3.81 8.06 -2.91 -0.02 3.79 16 37 H 0.17 3.14 6.27 -2.91 -0.02 3.12 16 38 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.07 0.97 7.66 -2.38 -0.02 0.95 16 40 H 0.07 0.97 7.66 -2.38 -0.02 0.95 16 41 H 0.39 12.84 9.06 -74.06 -0.67 12.17 16 Total: -1.00 -67.76 335.17 4.52 -63.24 By element: Atomic # 1 Polarization: 30.51 SS G_CDS: 0.34 Total: 30.85 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: 5.00 Total: -2.44 kcal Atomic # 7 Polarization: -68.83 SS G_CDS: -1.11 Total: -69.93 kcal Atomic # 8 Polarization: -62.78 SS G_CDS: -1.43 Total: -64.21 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 1.72 Total: 42.49 kcal Total: -67.76 4.52 -63.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148204942.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.362 kcal (2) G-P(sol) polarization free energy of solvation -67.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds