Wall clock time and date at job start Tue Mar 31 2020 06:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86805 * 119.99620 * 2 1 4 4 H 1.48498 * 109.47401 * 270.00007 * 3 2 1 5 5 H 1.48500 * 109.46987 * 30.00178 * 3 2 1 6 6 H 1.48502 * 109.46818 * 150.00242 * 3 2 1 7 7 C 1.40027 * 120.00388 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00022 * 197.00077 * 7 2 1 9 9 C 1.41551 * 119.99781 * 17.00666 * 7 2 1 10 10 C 1.41186 * 120.98839 * 203.27980 * 9 7 2 11 11 C 1.36566 * 119.14340 * 179.97438 * 10 9 7 12 12 N 1.32088 * 121.26799 * 359.97438 * 11 10 9 13 13 C 1.32537 * 122.21911 * 0.02562 * 12 11 10 14 14 N 1.39084 * 119.65681 * 179.97438 * 13 12 11 15 15 C 1.46499 * 119.99783 * 180.02562 * 14 13 12 16 16 C 1.52995 * 109.47016 * 179.97438 * 15 14 13 17 17 N 1.46897 * 109.47144 * 179.97438 * 16 15 14 18 18 C 1.46461 * 110.94020 * 63.81889 * 17 16 15 19 19 C 1.53253 * 109.86697 * 197.56688 * 18 17 16 20 20 S 1.81903 * 108.66657 * 298.30414 * 19 18 17 21 21 C 1.81895 * 101.91357 * 51.20859 * 20 19 18 22 22 C 1.46468 * 111.00132 * 189.99910 * 17 16 15 23 23 C 1.38745 * 120.68093 * 0.25209 * 13 12 11 24 24 H 0.96998 * 120.00608 * 359.97438 * 1 2 3 25 25 H 1.07996 * 120.42977 * 0.02562 * 10 9 7 26 26 H 1.07994 * 119.36198 * 179.97438 * 11 10 9 27 27 H 0.96997 * 119.99770 * 359.97438 * 14 13 12 28 28 H 1.09003 * 109.47264 * 59.99414 * 15 14 13 29 29 H 1.09003 * 109.46731 * 299.99820 * 15 14 13 30 30 H 1.09001 * 109.47062 * 60.00063 * 16 15 14 31 31 H 1.08998 * 109.47522 * 300.00058 * 16 15 14 32 32 H 1.08996 * 109.22888 * 77.54573 * 18 17 16 33 33 H 1.08999 * 109.57259 * 317.79185 * 18 17 16 34 34 H 1.08994 * 109.62810 * 178.50510 * 19 18 17 35 35 H 1.08997 * 109.63354 * 58.11020 * 19 18 17 36 36 H 1.09004 * 109.63163 * 68.39822 * 21 20 19 37 37 H 1.09000 * 109.63260 * 188.79023 * 21 20 19 38 38 H 1.08996 * 109.40589 * 42.12097 * 22 17 16 39 39 H 1.08998 * 109.40786 * 282.35508 * 22 17 16 40 40 H 1.08001 * 120.66021 * 179.74186 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4889 2.0466 -1.4000 5 1 1.4387 2.6527 0.7001 6 1 3.5389 1.4403 0.7000 7 6 2.0077 -1.2126 -0.0005 8 1 3.0522 -1.2331 0.2729 9 6 1.3464 -2.4115 -0.3596 10 6 1.8274 -3.6655 0.0757 11 6 1.1596 -4.7984 -0.2926 12 7 0.0758 -4.7412 -1.0455 13 6 -0.4209 -3.5929 -1.4830 14 7 -1.5653 -3.5948 -2.2734 15 6 -2.1204 -2.3300 -2.7615 16 6 -3.3682 -2.6109 -3.6011 17 7 -3.9252 -1.3426 -4.0900 18 6 -2.9861 -0.6713 -4.9914 19 6 -3.3707 0.8048 -5.1391 20 16 -5.0331 0.9028 -5.8710 21 6 -5.9850 -0.2091 -4.7911 22 6 -5.2433 -1.5468 -4.6952 23 6 0.1921 -2.3895 -1.1652 24 1 -0.4851 0.8400 0.0004 25 1 2.7116 -3.7280 0.6927 26 1 1.5247 -5.7594 0.0380 27 1 -1.9954 -4.4336 -2.5022 28 1 -1.3776 -1.8196 -3.3746 29 1 -2.3871 -1.6990 -1.9135 30 1 -4.1111 -3.1213 -2.9883 31 1 -3.1012 -3.2417 -4.4490 32 1 -3.0189 -1.1538 -5.9682 33 1 -1.9765 -0.7437 -4.5868 34 1 -2.6542 1.3065 -5.7894 35 1 -3.3731 1.2824 -4.1594 36 1 -6.0741 0.2322 -3.7984 37 1 -6.9779 -0.3671 -5.2120 38 1 -5.8206 -2.2378 -4.0811 39 1 -5.1222 -1.9661 -5.6940 40 1 -0.2106 -1.4543 -1.5253 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157045329.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:05 Heat of formation + Delta-G solvation = 37.052340 kcal Electronic energy + Delta-G solvation = -21044.157589 eV Core-core repulsion = 17984.509388 eV Total energy + Delta-G solvation = -3059.648202 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.82851 -38.21164 -35.08273 -33.96687 -31.81504 -31.32964 -30.42042 -28.48640 -26.25379 -25.88396 -23.91147 -22.66023 -21.43486 -20.72048 -20.39571 -17.77227 -17.11597 -15.96562 -15.69680 -15.52823 -15.12181 -14.82037 -14.57773 -14.28354 -14.07741 -13.87908 -13.51123 -13.23308 -12.88398 -12.78133 -12.53347 -12.42355 -12.17338 -11.84286 -11.49020 -11.40315 -11.28928 -11.12200 -10.80006 -10.75043 -10.19532 -9.88624 -9.86589 -9.40966 -8.91808 -8.58580 -7.97020 -7.86666 -7.84958 -6.81709 -6.43027 -4.53967 1.63077 2.35598 2.82240 3.04139 3.05511 3.07770 3.34151 3.39826 3.89075 4.29933 4.61831 4.66856 4.72227 4.88803 4.96439 5.03410 5.13153 5.23987 5.30217 5.40440 5.49398 5.61943 5.66168 5.78103 5.79883 6.02831 6.19012 6.34214 6.73680 6.76970 6.85859 6.89009 6.97988 7.08083 7.29063 7.56884 7.87131 7.97589 8.16078 8.44587 8.78120 8.85533 8.90952 9.76254 10.13368 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.013990 B = 0.004430 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.886494 B = 6319.265233 C = 8036.110925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.080 3.920 3 Si 0.907 3.093 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.458 4.458 8 H 0.079 0.921 9 C 0.151 3.849 10 C -0.303 4.303 11 C 0.130 3.870 12 N -0.624 5.624 13 C 0.384 3.616 14 N -0.744 5.744 15 C 0.145 3.855 16 C 0.054 3.946 17 N -0.547 5.547 18 C 0.049 3.951 19 C -0.072 4.072 20 S -0.283 6.283 21 C -0.073 4.073 22 C 0.058 3.942 23 C -0.277 4.277 24 H 0.280 0.720 25 H 0.097 0.903 26 H 0.118 0.882 27 H 0.386 0.614 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.039 0.961 32 H 0.047 0.953 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.086 0.914 39 H 0.047 0.953 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.754 1.798 -9.394 13.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.489 4.489 8 H 0.098 0.902 9 C 0.143 3.857 10 C -0.328 4.328 11 C -0.022 4.022 12 N -0.347 5.347 13 C 0.156 3.844 14 N -0.381 5.381 15 C 0.019 3.981 16 C -0.074 4.074 17 N -0.273 5.273 18 C -0.080 4.080 19 C -0.220 4.220 20 S -0.057 6.057 21 C -0.222 4.222 22 C -0.071 4.071 23 C -0.304 4.304 24 H 0.091 0.909 25 H 0.115 0.885 26 H 0.136 0.864 27 H 0.220 0.780 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.115 0.885 34 H 0.125 0.875 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.124 0.876 38 H 0.104 0.896 39 H 0.066 0.934 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.824 2.286 -10.135 15.003 hybrid contribution 1.109 0.135 0.624 1.280 sum -9.714 2.421 -9.511 13.809 Atomic orbital electron populations 1.69809 1.07590 1.29165 1.34140 1.25928 0.94716 1.01263 0.92042 0.86336 0.80603 0.80576 0.79377 1.19227 1.20230 1.18537 1.19597 0.97872 0.90935 1.40467 0.90238 1.17590 0.89893 0.91984 0.86236 1.21492 1.05793 0.94065 1.11435 1.21214 0.90753 0.96609 0.93655 1.66715 1.17714 1.27997 1.22313 1.18084 0.86413 0.90213 0.89655 1.43915 1.29347 1.06702 1.58120 1.21027 0.92592 0.86921 0.97514 1.22179 0.97509 0.89550 0.98162 1.60908 1.02777 1.23795 1.39789 1.22349 0.97399 0.92771 0.95450 1.23519 0.94545 0.99403 1.04543 1.86853 1.09701 1.63482 1.45667 1.23486 1.00078 0.96438 1.02180 1.22186 0.90068 0.96060 0.98809 1.21507 1.03358 0.95997 1.09506 0.90866 0.88471 0.86435 0.78049 0.93008 0.91155 0.90089 0.94304 0.93457 0.88453 0.87464 0.88627 0.88861 0.87637 0.89581 0.93435 0.85476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.64 10.91 55.55 0.61 -19.04 16 2 C 0.08 1.97 5.20 -17.34 -0.09 1.88 16 3 Si 0.91 18.24 29.59 -169.99 -5.03 13.21 16 4 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 5 H -0.28 -5.46 7.11 56.52 0.40 -5.05 16 6 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.46 -12.05 9.12 -37.65 -0.34 -12.39 16 8 H 0.08 2.01 7.90 -52.49 -0.41 1.60 16 9 C 0.15 4.07 5.61 -106.56 -0.60 3.47 16 10 C -0.30 -7.55 9.85 -39.07 -0.38 -7.94 16 11 C 0.13 3.07 11.10 -18.05 -0.20 2.87 16 12 N -0.62 -15.27 10.37 -12.82 -0.13 -15.41 16 13 C 0.38 9.26 7.65 -154.97 -1.19 8.07 16 14 N -0.74 -14.36 5.73 -60.47 -0.35 -14.71 16 15 C 0.15 2.41 4.81 -4.04 -0.02 2.39 16 16 C 0.05 0.67 5.08 -3.83 -0.02 0.65 16 17 N -0.55 -6.43 4.41 -235.05 -1.04 -7.47 16 18 C 0.05 0.57 5.30 -3.93 -0.02 0.55 16 19 C -0.07 -0.79 6.68 37.29 0.25 -0.54 16 20 S -0.28 -3.17 22.40 -107.50 -2.41 -5.58 16 21 C -0.07 -0.69 6.69 37.29 0.25 -0.44 16 22 C 0.06 0.56 5.43 -3.93 -0.02 0.54 16 23 C -0.28 -7.19 8.02 -38.44 -0.31 -7.50 16 24 H 0.28 6.41 8.29 -40.82 -0.34 6.07 16 25 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 26 H 0.12 2.37 8.06 -52.49 -0.42 1.94 16 27 H 0.39 6.73 8.60 -40.82 -0.35 6.38 16 28 H 0.05 0.90 5.95 -51.93 -0.31 0.59 16 29 H 0.07 1.34 7.94 -51.93 -0.41 0.93 16 30 H 0.08 0.96 7.84 -51.93 -0.41 0.55 16 31 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.53 7.92 -51.93 -0.41 0.12 16 33 H 0.10 1.22 5.77 -51.93 -0.30 0.92 16 34 H 0.11 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.09 0.73 7.76 -51.93 -0.40 0.33 16 39 H 0.05 0.46 7.92 -51.93 -0.41 0.05 16 40 H 0.13 3.31 4.84 -52.49 -0.25 3.06 16 LS Contribution 332.79 15.07 5.02 5.02 Total: -1.00 -28.72 332.79 -11.79 -40.51 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -5.77 Total: 11.84 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -2.69 Total: -8.38 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: -0.91 Total: -56.62 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.03 Total: 13.21 kcal Atomic # 16 Polarization: -3.17 SS G_CDS: -2.41 Total: -5.58 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.72 -11.79 -40.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157045329.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.565 kcal (2) G-P(sol) polarization free energy of solvation -28.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds