Wall clock time and date at job start Tue Mar 31 2020 06:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86805 * 119.99620 * 2 1 4 4 H 1.48498 * 109.47401 * 270.00007 * 3 2 1 5 5 H 1.48500 * 109.46987 * 30.00178 * 3 2 1 6 6 H 1.48502 * 109.46818 * 150.00242 * 3 2 1 7 7 C 1.40027 * 120.00388 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00022 * 197.00077 * 7 2 1 9 9 C 1.41551 * 119.99781 * 17.00666 * 7 2 1 10 10 C 1.41186 * 120.98839 * 203.27980 * 9 7 2 11 11 C 1.36566 * 119.14340 * 179.97438 * 10 9 7 12 12 N 1.32088 * 121.26799 * 359.97438 * 11 10 9 13 13 C 1.32537 * 122.21911 * 0.02562 * 12 11 10 14 14 N 1.39084 * 119.65681 * 179.97438 * 13 12 11 15 15 C 1.46499 * 119.99783 * 180.02562 * 14 13 12 16 16 C 1.52995 * 109.47016 * 179.97438 * 15 14 13 17 17 N 1.46897 * 109.47144 * 179.97438 * 16 15 14 18 18 C 1.46461 * 110.94020 * 63.81889 * 17 16 15 19 19 C 1.53253 * 109.86697 * 197.56688 * 18 17 16 20 20 S 1.81903 * 108.66657 * 298.30414 * 19 18 17 21 21 C 1.81895 * 101.91357 * 51.20859 * 20 19 18 22 22 C 1.46468 * 111.00132 * 189.99910 * 17 16 15 23 23 C 1.38745 * 120.68093 * 0.25209 * 13 12 11 24 24 H 0.96998 * 120.00608 * 359.97438 * 1 2 3 25 25 H 1.07996 * 120.42977 * 0.02562 * 10 9 7 26 26 H 1.07994 * 119.36198 * 179.97438 * 11 10 9 27 27 H 0.96997 * 119.99770 * 359.97438 * 14 13 12 28 28 H 1.09003 * 109.47264 * 59.99414 * 15 14 13 29 29 H 1.09003 * 109.46731 * 299.99820 * 15 14 13 30 30 H 1.09001 * 109.47062 * 60.00063 * 16 15 14 31 31 H 1.08998 * 109.47522 * 300.00058 * 16 15 14 32 32 H 1.08996 * 109.22888 * 77.54573 * 18 17 16 33 33 H 1.08999 * 109.57259 * 317.79185 * 18 17 16 34 34 H 1.08994 * 109.62810 * 178.50510 * 19 18 17 35 35 H 1.08997 * 109.63354 * 58.11020 * 19 18 17 36 36 H 1.09004 * 109.63163 * 68.39822 * 21 20 19 37 37 H 1.09000 * 109.63260 * 188.79023 * 21 20 19 38 38 H 1.08996 * 109.40589 * 42.12097 * 22 17 16 39 39 H 1.08998 * 109.40786 * 282.35508 * 22 17 16 40 40 H 1.08001 * 120.66021 * 179.74186 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4889 2.0466 -1.4000 5 1 1.4387 2.6527 0.7001 6 1 3.5389 1.4403 0.7000 7 6 2.0077 -1.2126 -0.0005 8 1 3.0522 -1.2331 0.2729 9 6 1.3464 -2.4115 -0.3596 10 6 1.8274 -3.6655 0.0757 11 6 1.1596 -4.7984 -0.2926 12 7 0.0758 -4.7412 -1.0455 13 6 -0.4209 -3.5929 -1.4830 14 7 -1.5653 -3.5948 -2.2734 15 6 -2.1204 -2.3300 -2.7615 16 6 -3.3682 -2.6109 -3.6011 17 7 -3.9252 -1.3426 -4.0900 18 6 -2.9861 -0.6713 -4.9914 19 6 -3.3707 0.8048 -5.1391 20 16 -5.0331 0.9028 -5.8710 21 6 -5.9850 -0.2091 -4.7911 22 6 -5.2433 -1.5468 -4.6952 23 6 0.1921 -2.3895 -1.1652 24 1 -0.4851 0.8400 0.0004 25 1 2.7116 -3.7280 0.6927 26 1 1.5247 -5.7594 0.0380 27 1 -1.9954 -4.4336 -2.5022 28 1 -1.3776 -1.8196 -3.3746 29 1 -2.3871 -1.6990 -1.9135 30 1 -4.1111 -3.1213 -2.9883 31 1 -3.1012 -3.2417 -4.4490 32 1 -3.0189 -1.1538 -5.9682 33 1 -1.9765 -0.7437 -4.5868 34 1 -2.6542 1.3065 -5.7894 35 1 -3.3731 1.2824 -4.1594 36 1 -6.0741 0.2322 -3.7984 37 1 -6.9779 -0.3671 -5.2120 38 1 -5.8206 -2.2378 -4.0811 39 1 -5.1222 -1.9661 -5.6940 40 1 -0.2106 -1.4543 -1.5253 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157045329.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:04 Heat of formation + Delta-G solvation = 19.870560 kcal Electronic energy + Delta-G solvation = -21044.902647 eV Core-core repulsion = 17984.509388 eV Total energy + Delta-G solvation = -3060.393259 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.38022 -39.48501 -36.65132 -35.81269 -32.80338 -32.56018 -32.14954 -30.01961 -27.83497 -27.62080 -24.83840 -24.04485 -22.96552 -22.22101 -21.74642 -19.57744 -18.09291 -17.46987 -17.28478 -16.81025 -16.38251 -16.09723 -16.00600 -15.78339 -15.32642 -14.99227 -14.68855 -14.66402 -14.47822 -14.31054 -14.05559 -13.57623 -13.22597 -13.10965 -12.94013 -12.71540 -12.65785 -12.54306 -12.38709 -11.92146 -11.81793 -11.67292 -11.23684 -10.77668 -10.59739 -9.90481 -9.80884 -9.49966 -8.73779 -8.67552 -8.21943 -6.52308 0.79715 1.05359 1.14112 1.38861 1.51756 1.52231 1.59701 2.19671 2.25366 2.82349 2.98749 3.71880 3.79581 3.83586 3.93051 4.03012 4.16303 4.23700 4.28713 4.33497 4.37990 4.46054 4.64337 4.72072 4.80932 4.84409 4.89831 4.93083 4.99203 5.01122 5.11417 5.21567 5.34829 5.64541 5.83154 5.96950 5.99587 6.10620 6.33994 6.61972 6.90911 6.92909 7.08089 7.88224 8.29279 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.013990 B = 0.004430 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.886494 B = 6319.265233 C = 8036.110925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.042 3.958 3 Si 0.981 3.019 4 H -0.261 1.261 5 H -0.267 1.267 6 H -0.258 1.258 7 C -0.491 4.491 8 H 0.079 0.921 9 C 0.121 3.879 10 C -0.325 4.325 11 C 0.131 3.869 12 N -0.633 5.633 13 C 0.381 3.619 14 N -0.732 5.732 15 C 0.152 3.848 16 C 0.069 3.931 17 N -0.559 5.559 18 C 0.053 3.947 19 C -0.067 4.067 20 S -0.305 6.305 21 C -0.065 4.065 22 C 0.059 3.941 23 C -0.302 4.302 24 H 0.289 0.711 25 H 0.108 0.892 26 H 0.155 0.845 27 H 0.398 0.602 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.094 0.906 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.082 0.918 34 H 0.117 0.883 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.128 0.872 38 H 0.104 0.896 39 H 0.053 0.947 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.647 1.847 -10.070 14.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.176 4.176 3 Si 0.801 3.199 4 H -0.186 1.186 5 H -0.191 1.191 6 H -0.181 1.181 7 C -0.522 4.522 8 H 0.097 0.903 9 C 0.113 3.887 10 C -0.350 4.350 11 C -0.021 4.021 12 N -0.357 5.357 13 C 0.151 3.849 14 N -0.368 5.368 15 C 0.027 3.973 16 C -0.059 4.059 17 N -0.284 5.284 18 C -0.077 4.077 19 C -0.215 4.215 20 S -0.079 6.079 21 C -0.214 4.214 22 C -0.069 4.069 23 C -0.329 4.329 24 H 0.100 0.900 25 H 0.126 0.874 26 H 0.172 0.828 27 H 0.233 0.767 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.112 0.888 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.100 0.900 34 H 0.135 0.865 35 H 0.102 0.898 36 H 0.106 0.894 37 H 0.146 0.854 38 H 0.122 0.878 39 H 0.071 0.929 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.754 2.319 -10.830 16.150 hybrid contribution 1.325 0.077 0.845 1.573 sum -10.430 2.396 -9.985 14.636 Atomic orbital electron populations 1.69857 1.08989 1.30606 1.33764 1.26768 0.95484 1.04374 0.90946 0.85225 0.79183 0.75830 0.79644 1.18551 1.19097 1.18143 1.19877 0.98156 0.92102 1.42034 0.90290 1.18033 0.90697 0.93167 0.86837 1.21696 1.06757 0.94083 1.12458 1.21775 0.90059 0.97787 0.92506 1.66889 1.18190 1.27774 1.22859 1.18344 0.87295 0.89729 0.89531 1.43944 1.27856 1.08260 1.56741 1.20998 0.94157 0.85364 0.96785 1.21982 0.95707 0.90190 0.97996 1.60881 1.03684 1.23398 1.40471 1.22287 0.96672 0.93196 0.95515 1.23464 0.94918 0.99043 1.04116 1.86926 1.10105 1.64513 1.46399 1.23552 1.00697 0.95603 1.01511 1.22254 0.88878 0.96550 0.99266 1.21487 1.04165 0.96420 1.10839 0.90029 0.87427 0.82813 0.76663 0.94022 0.93963 0.88780 0.93045 0.92853 0.89994 0.86513 0.89817 0.89387 0.85358 0.87815 0.92912 0.86435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.32 10.91 21.84 0.24 -41.08 16 2 C 0.04 2.07 5.20 85.29 0.44 2.51 16 3 Si 0.98 37.36 29.59 68.60 2.03 39.39 16 4 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 5 H -0.27 -9.62 7.11 99.48 0.71 -8.91 16 6 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 7 C -0.49 -26.50 9.12 23.52 0.21 -26.28 16 8 H 0.08 4.10 7.90 -2.91 -0.02 4.08 16 9 C 0.12 6.67 5.61 -21.12 -0.12 6.55 16 10 C -0.32 -16.40 9.85 22.60 0.22 -16.18 16 11 C 0.13 6.11 11.10 84.26 0.94 7.04 16 12 N -0.63 -30.66 10.37 -194.47 -2.02 -32.68 16 13 C 0.38 18.48 7.65 132.90 1.02 19.50 16 14 N -0.73 -28.00 5.73 -345.24 -1.98 -29.98 16 15 C 0.15 5.08 4.81 86.38 0.42 5.50 16 16 C 0.07 1.62 5.08 86.30 0.44 2.06 16 17 N -0.56 -12.38 4.41 -897.56 -3.95 -16.34 16 18 C 0.05 1.18 5.30 86.47 0.46 1.64 16 19 C -0.07 -1.44 6.68 72.07 0.48 -0.96 16 20 S -0.30 -6.47 22.40 -56.49 -1.27 -7.74 16 21 C -0.07 -1.09 6.69 72.07 0.48 -0.61 16 22 C 0.06 1.00 5.43 86.47 0.47 1.47 16 23 C -0.30 -16.14 8.02 23.01 0.18 -15.95 16 24 H 0.29 13.34 8.29 -92.71 -0.77 12.57 16 25 H 0.11 5.03 8.06 -2.91 -0.02 5.00 16 26 H 0.15 5.88 8.06 -2.91 -0.02 5.86 16 27 H 0.40 13.34 8.60 -92.71 -0.80 12.55 16 28 H 0.04 1.49 5.95 -2.39 -0.01 1.47 16 29 H 0.04 1.66 7.94 -2.39 -0.02 1.64 16 30 H 0.09 1.99 7.84 -2.39 -0.02 1.98 16 31 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.05 1.13 7.92 -2.39 -0.02 1.11 16 33 H 0.08 2.09 5.77 -2.39 -0.01 2.07 16 34 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 37 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.10 1.43 7.76 -2.39 -0.02 1.41 16 39 H 0.05 0.87 7.92 -2.39 -0.02 0.85 16 40 H 0.12 6.38 4.84 -2.91 -0.01 6.37 16 Total: -1.00 -62.42 332.79 -1.05 -63.48 By element: Atomic # 1 Polarization: 38.41 SS G_CDS: 0.25 Total: 38.66 kcal Atomic # 6 Polarization: -19.35 SS G_CDS: 5.64 Total: -13.71 kcal Atomic # 7 Polarization: -112.36 SS G_CDS: -7.71 Total: -120.07 kcal Atomic # 14 Polarization: 37.36 SS G_CDS: 2.03 Total: 39.39 kcal Atomic # 16 Polarization: -6.47 SS G_CDS: -1.27 Total: -7.74 kcal Total: -62.42 -1.05 -63.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157045329.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.347 kcal (2) G-P(sol) polarization free energy of solvation -62.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds