Wall clock time and date at job start Tue Mar 31 2020 06:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81003 * 1 3 3 C 1.76199 * 100.00128 * 2 1 4 4 N 1.32555 * 119.18328 * 0.02562 * 3 2 1 5 5 C 1.32472 * 120.92355 * 179.97438 * 4 3 2 6 6 C 1.50704 * 120.34731 * 179.97438 * 5 4 3 7 7 C 1.38146 * 119.29821 * 0.02562 * 5 4 3 8 8 C 1.39660 * 118.49961 * 0.27698 * 7 5 4 9 9 N 1.38529 * 120.47754 * 179.72437 * 8 7 5 10 10 C 1.46840 * 111.00483 * 56.04496 * 9 8 7 11 11 C 1.53041 * 109.52498 * 185.83627 * 10 9 8 12 12 C 1.53120 * 109.27828 * 300.81938 * 11 10 9 13 13 C 1.53123 * 109.16028 * 57.65483 * 12 11 10 14 14 H 1.09003 * 109.50478 * 62.32073 * 13 12 11 15 15 C 1.50694 * 109.50315 * 182.40333 * 13 12 11 16 16 H 1.08002 * 120.00263 * 119.99815 * 15 13 12 17 17 C 1.37875 * 119.99893 * 299.99756 * 15 13 12 18 18 N 1.31517 * 120.00498 * 0.02562 * 17 15 13 19 19 Si 1.86808 * 120.00001 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.46902 * 60.00226 * 19 17 15 21 21 H 1.48499 * 109.47025 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.46826 * 300.00427 * 19 17 15 23 23 C 1.46854 * 110.99580 * 180.25586 * 9 8 7 24 24 N 1.32505 * 119.17934 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47369 * 59.99576 * 1 2 3 26 26 H 1.08998 * 109.47299 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46859 * 299.99757 * 1 2 3 28 28 H 1.08998 * 109.47053 * 270.01977 * 6 5 4 29 29 H 1.08997 * 109.47347 * 30.02849 * 6 5 4 30 30 H 1.09001 * 109.46429 * 150.02557 * 6 5 4 31 31 H 1.08002 * 120.74637 * 179.97438 * 7 5 4 32 32 H 1.08998 * 109.46245 * 305.84906 * 10 9 8 33 33 H 1.08999 * 109.46446 * 65.82980 * 10 9 8 34 34 H 1.09005 * 109.50208 * 60.76124 * 11 10 9 35 35 H 1.09002 * 109.50496 * 180.87800 * 11 10 9 36 36 H 1.08996 * 109.52019 * 177.55728 * 12 11 10 37 37 H 1.08990 * 109.52015 * 297.68470 * 12 11 10 38 38 H 0.96993 * 120.00409 * 179.97438 * 18 17 15 39 39 H 1.08997 * 109.45980 * 294.16863 * 23 9 8 40 40 H 1.08999 * 109.46302 * 54.14133 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 7 1.0886 2.5727 0.0005 5 6 1.2789 3.8837 0.0010 6 6 0.1013 4.8241 0.0010 7 6 2.5683 4.3796 0.0005 8 6 3.6309 3.4733 -0.0065 9 7 4.9402 3.9257 -0.0130 10 6 5.1938 4.8197 1.1239 11 6 6.5996 5.4127 1.0045 12 6 7.6271 4.2776 0.9847 13 6 7.3116 3.3344 -0.1795 14 1 7.3986 3.8766 -1.1211 15 6 8.2827 2.1821 -0.1709 16 1 7.9191 1.1702 -0.0694 17 6 9.6354 2.4197 -0.2925 18 7 10.0783 3.6519 -0.4156 19 14 10.8393 0.9913 -0.2811 20 1 10.5328 0.0766 -1.4100 21 1 12.2235 1.5095 -0.4250 22 1 10.7186 0.2526 1.0015 23 6 5.8852 2.8016 -0.0258 24 7 3.3675 2.1705 0.0005 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.1826 5.0509 -1.0266 29 1 -0.7380 4.3554 0.5149 30 1 0.3728 5.7462 0.5149 31 1 2.7504 5.4442 0.0005 32 1 4.4590 5.6247 1.1238 33 1 5.1153 4.2563 2.0536 34 1 6.6748 5.9879 0.0816 35 1 6.7934 6.0642 1.8567 36 1 8.6265 4.6932 0.8562 37 1 7.5796 3.7270 1.9240 38 1 11.0299 3.8190 -0.5008 39 1 5.8033 2.2477 0.9093 40 1 5.6523 2.1409 -0.8608 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166740740.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:54 Heat of formation + Delta-G solvation = 44.088986 kcal Electronic energy + Delta-G solvation = -21358.563937 eV Core-core repulsion = 18299.220868 eV Total energy + Delta-G solvation = -3059.343070 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.96529 -38.37734 -34.66138 -33.71655 -32.30448 -30.62579 -30.13013 -28.86642 -28.27744 -25.26339 -24.31702 -23.86967 -21.54207 -21.23925 -18.88263 -17.88788 -17.32638 -16.47835 -15.88707 -15.32955 -15.06385 -14.60307 -14.43249 -14.04980 -13.77838 -13.63133 -13.40278 -13.09181 -12.83609 -12.76593 -12.63822 -12.44644 -12.35281 -11.89668 -11.06795 -10.95393 -10.81254 -10.71590 -10.58016 -10.35926 -10.21783 -10.03456 -9.89823 -9.54288 -9.22724 -9.13185 -8.76410 -8.34329 -8.14452 -7.69579 -5.99218 -4.04934 0.96300 1.25052 1.30550 2.14677 3.34255 3.38106 3.41618 3.63508 3.92172 4.19336 4.45958 4.76414 4.96897 5.04629 5.10662 5.21729 5.25300 5.31217 5.36715 5.46298 5.52714 5.64978 5.68533 5.72000 5.81122 5.98002 6.25273 6.35431 6.45161 6.50352 6.65712 6.79692 6.89952 7.14072 7.29942 7.38573 7.58480 7.73660 7.99474 8.07957 8.15891 8.43730 8.98168 9.59611 11.07166 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.018457 B = 0.004390 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.641481 B = 6375.917663 C = 7720.669857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.003 6.003 3 C 0.324 3.676 4 N -0.558 5.558 5 C 0.194 3.806 6 C -0.100 4.100 7 C -0.258 4.258 8 C 0.383 3.617 9 N -0.469 5.469 10 C 0.069 3.931 11 C -0.119 4.119 12 C -0.115 4.115 13 C 0.051 3.949 14 H 0.034 0.966 15 C -0.513 4.513 16 H 0.056 0.944 17 C 0.064 3.936 18 N -0.890 5.890 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C 0.076 3.924 24 N -0.537 5.537 25 H 0.088 0.912 26 H 0.102 0.898 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.145 0.855 32 H 0.070 0.930 33 H 0.042 0.958 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.096 0.904 37 H 0.034 0.966 38 H 0.261 0.739 39 H 0.041 0.959 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.045 1.570 2.652 19.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 S 0.230 5.770 3 C -0.054 4.054 4 N -0.280 5.280 5 C 0.048 3.952 6 C -0.158 4.158 7 C -0.287 4.287 8 C 0.139 3.861 9 N -0.184 5.184 10 C -0.056 4.056 11 C -0.157 4.157 12 C -0.153 4.153 13 C 0.033 3.967 14 H 0.053 0.947 15 C -0.552 4.552 16 H 0.074 0.926 17 C -0.137 4.137 18 N -0.529 5.529 19 Si 0.720 3.280 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.049 4.049 24 N -0.261 5.261 25 H 0.107 0.893 26 H 0.120 0.880 27 H 0.106 0.894 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.163 0.837 32 H 0.089 0.911 33 H 0.060 0.940 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.114 0.886 37 H 0.053 0.947 38 H 0.070 0.930 39 H 0.060 0.940 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -18.142 0.022 2.225 18.278 hybrid contribution 0.018 0.891 0.455 1.000 sum -18.124 0.913 2.680 18.344 Atomic orbital electron populations 1.23503 0.94858 1.05867 1.06952 1.85936 1.05921 0.94244 1.90877 1.24618 0.86762 1.00038 0.93980 1.68545 1.34190 1.03756 1.21549 1.21372 0.94224 0.90533 0.89067 1.20712 0.94755 0.96873 1.03429 1.22085 0.92670 1.01792 1.12125 1.20385 0.91611 0.87665 0.86398 1.58909 0.99337 1.20439 1.39745 1.22248 0.99593 0.94605 0.89171 1.21752 0.93200 0.99490 1.01264 1.21727 0.99779 0.95096 0.98667 1.18763 0.87858 0.94853 0.95267 0.94741 1.21053 0.91127 0.92783 1.50208 0.92577 1.24916 0.98261 0.95585 0.94968 1.69865 1.14258 1.18737 1.50037 0.86650 0.80000 0.82654 0.78670 1.20214 1.21325 1.20286 1.22383 0.92300 0.89069 1.01160 1.68560 1.21154 1.15987 1.20377 0.89335 0.87977 0.89357 0.89889 0.90306 0.90227 0.83728 0.91136 0.93973 0.91607 0.92423 0.88570 0.94708 0.92961 0.94044 0.90794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.62 101.05 0.97 -0.39 16 2 S 0.00 -0.04 22.89 -107.50 -2.46 -2.50 16 3 C 0.32 5.45 7.85 -90.88 -0.71 4.73 16 4 N -0.56 -8.35 9.07 -9.75 -0.09 -8.44 16 5 C 0.19 2.60 6.81 -82.35 -0.56 2.04 16 6 C -0.10 -0.87 10.21 36.01 0.37 -0.50 16 7 C -0.26 -3.80 8.94 -39.08 -0.35 -4.15 16 8 C 0.38 6.97 6.40 -154.84 -0.99 5.98 16 9 N -0.47 -9.08 4.68 -173.07 -0.81 -9.89 16 10 C 0.07 1.17 5.25 -3.84 -0.02 1.15 16 11 C -0.12 -2.18 6.09 -26.65 -0.16 -2.34 16 12 C -0.11 -2.63 5.02 -26.61 -0.13 -2.77 16 13 C 0.05 1.29 2.26 -91.69 -0.21 1.08 16 14 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 15 C -0.51 -14.16 8.56 -34.44 -0.29 -14.45 16 16 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 17 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 18 N -0.89 -25.13 11.35 55.43 0.63 -24.51 16 19 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 C 0.08 1.71 3.89 -3.83 -0.01 1.69 16 24 N -0.54 -10.31 8.81 -12.68 -0.11 -10.43 16 25 H 0.09 0.85 8.11 -51.92 -0.42 0.43 16 26 H 0.10 0.71 8.14 -51.92 -0.42 0.29 16 27 H 0.09 0.84 8.11 -51.91 -0.42 0.42 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.55 8.09 -51.93 -0.42 0.13 16 31 H 0.14 1.77 7.23 -52.49 -0.38 1.40 16 32 H 0.07 0.98 6.75 -51.93 -0.35 0.63 16 33 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.10 2.46 6.15 -51.93 -0.32 2.14 16 37 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.04 0.96 8.12 -51.93 -0.42 0.54 16 40 H 0.07 1.76 7.74 -51.93 -0.40 1.35 16 LS Contribution 335.37 15.07 5.05 5.05 Total: -1.00 -30.19 335.37 -11.07 -41.26 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -6.06 Total: -0.68 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -2.20 Total: -6.24 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: -0.38 Total: -53.26 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -0.04 SS G_CDS: -2.46 Total: -2.50 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.19 -11.07 -41.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166740740.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.353 kcal (2) G-P(sol) polarization free energy of solvation -30.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds