Wall clock time and date at job start Tue Mar 31 2020 06:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81003 * 1 3 3 C 1.76199 * 100.00128 * 2 1 4 4 N 1.32555 * 119.18328 * 0.02562 * 3 2 1 5 5 C 1.32472 * 120.92355 * 179.97438 * 4 3 2 6 6 C 1.50704 * 120.34731 * 179.97438 * 5 4 3 7 7 C 1.38146 * 119.29821 * 0.02562 * 5 4 3 8 8 C 1.39660 * 118.49961 * 0.27698 * 7 5 4 9 9 N 1.38529 * 120.47754 * 179.72437 * 8 7 5 10 10 C 1.46840 * 111.00483 * 56.04496 * 9 8 7 11 11 C 1.53041 * 109.52498 * 185.83627 * 10 9 8 12 12 C 1.53120 * 109.27828 * 300.81938 * 11 10 9 13 13 C 1.53123 * 109.16028 * 57.65483 * 12 11 10 14 14 H 1.09003 * 109.50478 * 62.32073 * 13 12 11 15 15 C 1.50694 * 109.50315 * 182.40333 * 13 12 11 16 16 H 1.08002 * 120.00263 * 119.99815 * 15 13 12 17 17 C 1.37875 * 119.99893 * 299.99756 * 15 13 12 18 18 N 1.31517 * 120.00498 * 0.02562 * 17 15 13 19 19 Si 1.86808 * 120.00001 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.46902 * 60.00226 * 19 17 15 21 21 H 1.48499 * 109.47025 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.46826 * 300.00427 * 19 17 15 23 23 C 1.46854 * 110.99580 * 180.25586 * 9 8 7 24 24 N 1.32505 * 119.17934 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47369 * 59.99576 * 1 2 3 26 26 H 1.08998 * 109.47299 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46859 * 299.99757 * 1 2 3 28 28 H 1.08998 * 109.47053 * 270.01977 * 6 5 4 29 29 H 1.08997 * 109.47347 * 30.02849 * 6 5 4 30 30 H 1.09001 * 109.46429 * 150.02557 * 6 5 4 31 31 H 1.08002 * 120.74637 * 179.97438 * 7 5 4 32 32 H 1.08998 * 109.46245 * 305.84906 * 10 9 8 33 33 H 1.08999 * 109.46446 * 65.82980 * 10 9 8 34 34 H 1.09005 * 109.50208 * 60.76124 * 11 10 9 35 35 H 1.09002 * 109.50496 * 180.87800 * 11 10 9 36 36 H 1.08996 * 109.52019 * 177.55728 * 12 11 10 37 37 H 1.08990 * 109.52015 * 297.68470 * 12 11 10 38 38 H 0.96993 * 120.00409 * 179.97438 * 18 17 15 39 39 H 1.08997 * 109.45980 * 294.16863 * 23 9 8 40 40 H 1.08999 * 109.46302 * 54.14133 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 7 1.0886 2.5727 0.0005 5 6 1.2789 3.8837 0.0010 6 6 0.1013 4.8241 0.0010 7 6 2.5683 4.3796 0.0005 8 6 3.6309 3.4733 -0.0065 9 7 4.9402 3.9257 -0.0130 10 6 5.1938 4.8197 1.1239 11 6 6.5996 5.4127 1.0045 12 6 7.6271 4.2776 0.9847 13 6 7.3116 3.3344 -0.1795 14 1 7.3986 3.8766 -1.1211 15 6 8.2827 2.1821 -0.1709 16 1 7.9191 1.1702 -0.0694 17 6 9.6354 2.4197 -0.2925 18 7 10.0783 3.6519 -0.4156 19 14 10.8393 0.9913 -0.2811 20 1 10.5328 0.0766 -1.4100 21 1 12.2235 1.5095 -0.4250 22 1 10.7186 0.2526 1.0015 23 6 5.8852 2.8016 -0.0258 24 7 3.3675 2.1705 0.0005 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.1826 5.0509 -1.0266 29 1 -0.7380 4.3554 0.5149 30 1 0.3728 5.7462 0.5149 31 1 2.7504 5.4442 0.0005 32 1 4.4590 5.6247 1.1238 33 1 5.1153 4.2563 2.0536 34 1 6.6748 5.9879 0.0816 35 1 6.7934 6.0642 1.8567 36 1 8.6265 4.6932 0.8562 37 1 7.5796 3.7270 1.9240 38 1 11.0299 3.8190 -0.5008 39 1 5.8033 2.2477 0.9093 40 1 5.6523 2.1409 -0.8608 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166740740.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:53 Heat of formation + Delta-G solvation = 26.644992 kcal Electronic energy + Delta-G solvation = -21359.320366 eV Core-core repulsion = 18299.220868 eV Total energy + Delta-G solvation = -3060.099498 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.21868 -39.87974 -36.24019 -35.08545 -33.94342 -32.03090 -31.86012 -29.72506 -29.27166 -27.09626 -25.82749 -25.24328 -23.15779 -22.61197 -20.59620 -19.22500 -18.60226 -18.26029 -17.34573 -16.56009 -16.54356 -16.24063 -15.62421 -15.54907 -15.17741 -14.86007 -14.51398 -14.39366 -14.25123 -14.08584 -13.79809 -13.60586 -13.40552 -13.15062 -12.87811 -12.76630 -12.59374 -12.16467 -11.96329 -11.86090 -11.82596 -11.46239 -11.41189 -11.14700 -11.01978 -10.75874 -10.42176 -10.34992 -9.60602 -8.81368 -8.11778 -6.25458 -0.22998 0.07610 0.20447 1.24158 1.40405 1.41735 1.49601 2.32127 2.44834 2.65968 3.14536 3.15453 3.61242 3.75066 4.02544 4.07627 4.21868 4.27558 4.33073 4.35347 4.39018 4.48267 4.56349 4.75471 4.76952 4.82432 4.84019 4.92223 4.95687 4.97623 5.05341 5.20496 5.32706 5.43490 5.58071 5.59988 5.92583 6.03601 6.07273 6.16605 6.35982 6.82715 6.92132 7.42071 8.92991 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.018457 B = 0.004390 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.641481 B = 6375.917663 C = 7720.669857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.035 6.035 3 C 0.307 3.693 4 N -0.553 5.553 5 C 0.194 3.806 6 C -0.095 4.095 7 C -0.252 4.252 8 C 0.355 3.645 9 N -0.477 5.477 10 C 0.071 3.929 11 C -0.110 4.110 12 C -0.107 4.107 13 C 0.052 3.948 14 H 0.001 0.999 15 C -0.540 4.540 16 H 0.045 0.955 17 C 0.021 3.979 18 N -0.911 5.911 19 Si 0.953 3.047 20 H -0.274 1.274 21 H -0.278 1.278 22 H -0.272 1.272 23 C 0.102 3.898 24 N -0.578 5.578 25 H 0.090 0.910 26 H 0.132 0.868 27 H 0.091 0.909 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.105 0.895 31 H 0.174 0.826 32 H 0.113 0.887 33 H 0.037 0.963 34 H 0.062 0.938 35 H 0.089 0.911 36 H 0.067 0.933 37 H 0.024 0.976 38 H 0.263 0.737 39 H 0.024 0.976 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.536 2.641 3.259 21.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S 0.198 5.802 3 C -0.070 4.070 4 N -0.275 5.275 5 C 0.048 3.952 6 C -0.152 4.152 7 C -0.280 4.280 8 C 0.113 3.887 9 N -0.193 5.193 10 C -0.054 4.054 11 C -0.147 4.147 12 C -0.146 4.146 13 C 0.033 3.967 14 H 0.019 0.981 15 C -0.579 4.579 16 H 0.063 0.937 17 C -0.179 4.179 18 N -0.550 5.550 19 Si 0.778 3.222 20 H -0.200 1.200 21 H -0.204 1.204 22 H -0.197 1.197 23 C -0.024 4.024 24 N -0.303 5.303 25 H 0.109 0.891 26 H 0.150 0.850 27 H 0.110 0.890 28 H 0.117 0.883 29 H 0.106 0.894 30 H 0.123 0.877 31 H 0.192 0.808 32 H 0.131 0.869 33 H 0.055 0.945 34 H 0.081 0.919 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.043 0.957 38 H 0.072 0.928 39 H 0.042 0.958 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -20.659 1.096 2.835 20.882 hybrid contribution 0.652 0.531 0.250 0.877 sum -20.007 1.627 3.084 20.309 Atomic orbital electron populations 1.23580 0.90758 1.07861 1.07143 1.85998 1.10422 0.93293 1.90509 1.25001 0.86466 1.01330 0.94196 1.68673 1.33234 1.04507 1.21086 1.22240 0.95490 0.90595 0.86874 1.20873 0.92828 0.96604 1.04902 1.22375 0.92007 1.02606 1.11041 1.20591 0.91633 0.88363 0.88114 1.58942 0.99599 1.19391 1.41383 1.22342 0.99633 0.95161 0.88219 1.21646 0.92624 0.97923 1.02530 1.21514 0.99947 0.96123 0.96983 1.18659 0.89178 0.94358 0.94492 0.98119 1.21373 0.92399 0.93151 1.50952 0.93686 1.25638 0.99715 0.98065 0.94465 1.69987 1.14611 1.20253 1.50149 0.85693 0.78032 0.79694 0.78736 1.19981 1.20355 1.19738 1.21800 0.91834 0.89736 0.99071 1.68480 1.22871 1.17098 1.21841 0.89119 0.84995 0.88977 0.88266 0.89369 0.87679 0.80811 0.86870 0.94470 0.91912 0.89223 0.91419 0.95668 0.92808 0.95763 0.93288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.12 9.62 113.37 1.09 -1.03 16 2 S -0.04 -0.97 22.89 -56.49 -1.29 -2.26 16 3 C 0.31 10.29 7.85 180.44 1.42 11.70 16 4 N -0.55 -15.56 9.07 -184.77 -1.68 -17.24 16 5 C 0.19 4.65 6.81 42.44 0.29 4.94 16 6 C -0.09 -1.22 10.21 71.24 0.73 -0.49 16 7 C -0.25 -6.78 8.94 22.59 0.20 -6.58 16 8 C 0.35 12.82 6.40 133.20 0.85 13.67 16 9 N -0.48 -18.63 4.68 -701.47 -3.28 -21.91 16 10 C 0.07 2.31 5.25 86.33 0.45 2.76 16 11 C -0.11 -3.91 6.09 30.65 0.19 -3.73 16 12 C -0.11 -5.10 5.02 30.68 0.15 -4.94 16 13 C 0.05 2.74 2.26 -11.49 -0.03 2.72 16 14 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 15 C -0.54 -31.27 8.56 25.60 0.22 -31.05 16 16 H 0.04 2.62 7.74 -2.91 -0.02 2.60 16 17 C 0.02 1.16 5.30 84.65 0.45 1.61 16 18 N -0.91 -52.89 11.35 21.45 0.24 -52.65 16 19 Si 0.95 44.78 29.54 68.60 2.03 46.80 16 20 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 22 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 23 C 0.10 4.84 3.89 86.33 0.34 5.17 16 24 N -0.58 -22.73 8.81 -194.02 -1.71 -24.44 16 25 H 0.09 1.54 8.11 -2.39 -0.02 1.52 16 26 H 0.13 1.47 8.14 -2.40 -0.02 1.45 16 27 H 0.09 1.54 8.11 -2.39 -0.02 1.52 16 28 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.10 0.88 8.09 -2.39 -0.02 0.86 16 31 H 0.17 3.52 7.23 -2.91 -0.02 3.50 16 32 H 0.11 2.73 6.75 -2.39 -0.02 2.71 16 33 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 35 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 36 H 0.07 3.59 6.15 -2.39 -0.01 3.57 16 37 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 39 H 0.02 1.20 8.12 -2.39 -0.02 1.18 16 40 H 0.05 2.50 7.74 -2.39 -0.02 2.48 16 Total: -1.00 -69.86 335.37 1.69 -68.18 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: 1.02 Total: 8.75 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: 6.35 Total: -5.24 kcal Atomic # 7 Polarization: -109.81 SS G_CDS: -6.42 Total: -116.23 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Atomic # 16 Polarization: -0.97 SS G_CDS: -1.29 Total: -2.26 kcal Total: -69.86 1.69 -68.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166740740.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.820 kcal (2) G-P(sol) polarization free energy of solvation -69.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds