Wall clock time and date at job start Tue Mar 31 2020 06:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80996 * 1 3 3 C 1.76205 * 99.99993 * 2 1 4 4 C 1.39246 * 120.49083 * 179.97438 * 3 2 1 5 5 C 1.39088 * 118.26151 * 179.97438 * 4 3 2 6 6 N 1.38645 * 120.48158 * 180.02562 * 5 4 3 7 7 C 1.46506 * 119.99948 * 0.02562 * 6 5 4 8 8 H 1.09001 * 109.40678 * 324.58045 * 7 6 5 9 9 C 1.52960 * 109.41198 * 84.36894 * 7 6 5 10 10 C 1.53230 * 109.39851 * 183.70566 * 9 7 6 11 11 C 1.51268 * 108.53936 * 305.37111 * 10 9 7 12 12 C 1.37879 * 120.85090 * 231.32778 * 11 10 9 13 13 N 1.31513 * 119.99883 * 180.02562 * 12 11 10 14 14 Si 1.86796 * 120.00048 * 0.02562 * 12 11 10 15 15 H 1.48497 * 109.47225 * 90.00024 * 14 12 11 16 16 H 1.48500 * 109.47392 * 210.00062 * 14 12 11 17 17 H 1.48503 * 109.47065 * 330.00043 * 14 12 11 18 18 C 1.51270 * 118.30059 * 51.35207 * 11 10 9 19 19 C 1.52960 * 109.41258 * 204.72496 * 7 6 5 20 20 N 1.33218 * 119.03984 * 0.27634 * 5 4 3 21 21 C 1.31742 * 120.88972 * 359.44280 * 20 5 4 22 22 C 1.50700 * 119.03717 * 180.31401 * 21 20 5 23 23 N 1.31735 * 121.92007 * 0.56844 * 21 20 5 24 24 H 1.09002 * 109.47289 * 299.99923 * 1 2 3 25 25 H 1.09001 * 109.47207 * 59.99667 * 1 2 3 26 26 H 1.09001 * 109.47281 * 180.02562 * 1 2 3 27 27 H 1.07997 * 120.86818 * 359.96291 * 4 3 2 28 28 H 0.97005 * 120.00182 * 179.72498 * 6 5 4 29 29 H 1.08993 * 109.48467 * 303.68073 * 9 7 6 30 30 H 1.08995 * 109.47992 * 63.73055 * 9 7 6 31 31 H 1.09001 * 109.62786 * 185.65576 * 10 9 7 32 32 H 1.09002 * 109.78390 * 65.18640 * 10 9 7 33 33 H 0.96994 * 120.00141 * 180.02562 * 13 12 11 34 34 H 1.08996 * 109.62874 * 188.93981 * 18 11 10 35 35 H 1.08994 * 109.78302 * 68.45488 * 18 11 10 36 36 H 1.08999 * 109.48174 * 296.27018 * 19 7 6 37 37 H 1.08999 * 109.48294 * 56.31506 * 19 7 6 38 38 H 1.09004 * 109.46800 * 270.24946 * 22 21 20 39 39 H 1.09004 * 109.47387 * 30.25176 * 22 21 20 40 40 H 1.09003 * 109.47383 * 150.25424 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 6 3.4203 2.2227 0.0005 5 6 3.6084 3.6008 0.0000 6 7 4.8873 4.1361 -0.0001 7 6 6.0529 3.2485 -0.0001 8 1 5.8335 2.3626 0.5958 9 6 6.3715 2.8279 -1.4358 10 6 7.5320 1.8273 -1.4272 11 6 8.6961 2.4471 -0.6863 12 6 9.9541 2.4831 -1.2495 13 7 10.9544 3.0256 -0.5902 14 14 10.2377 1.7613 -2.9489 15 1 10.0193 2.8116 -3.9756 16 1 11.6308 1.2562 -3.0460 17 1 9.2885 0.6420 -3.1760 18 6 8.4448 3.0259 0.6885 19 6 7.2512 3.9831 0.6033 20 7 2.5418 4.3990 0.0045 21 6 1.3229 3.8992 -0.0014 22 6 0.1462 4.8407 -0.0031 23 7 1.1027 2.6004 -0.0010 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 4.2638 1.5484 0.0016 28 1 5.0104 5.0983 -0.0045 29 1 5.4929 2.3617 -1.8815 30 1 6.6526 3.7055 -2.0178 31 1 7.8284 1.6016 -2.4516 32 1 7.2246 0.9101 -0.9247 33 1 11.8393 3.0513 -0.9865 34 1 9.3276 3.5705 1.0234 35 1 8.2211 2.2235 1.3913 36 1 7.5114 4.8333 -0.0271 37 1 6.9960 4.3357 1.6026 38 1 -0.1385 5.0682 1.0242 39 1 0.4190 5.7624 -0.5172 40 1 -0.6931 4.3725 -0.5175 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167840500.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:40 Heat of formation + Delta-G solvation = 28.493899 kcal Electronic energy + Delta-G solvation = -21165.211942 eV Core-core repulsion = 18105.192619 eV Total energy + Delta-G solvation = -3060.019323 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.72248 -37.88611 -34.99962 -33.29607 -32.40182 -30.84223 -29.77149 -29.13429 -28.20256 -27.13201 -24.01492 -22.91588 -21.64147 -21.21645 -19.62734 -18.02338 -17.73521 -16.21690 -15.78383 -15.27134 -15.11480 -14.78145 -14.50340 -14.23731 -13.69494 -13.49364 -13.46804 -13.05576 -12.76717 -12.51891 -12.48926 -12.42928 -12.20440 -11.86472 -11.46003 -11.08361 -10.91658 -10.84535 -10.72295 -10.58757 -10.21502 -10.10325 -9.94081 -9.58399 -9.15009 -9.05904 -8.81140 -8.54496 -7.98194 -7.66168 -6.18121 -4.09887 1.07708 1.43066 1.48203 2.09638 3.20810 3.27917 3.32086 3.33302 3.91590 4.21050 4.32191 4.72014 5.02268 5.06873 5.09709 5.11325 5.39178 5.44198 5.47903 5.56970 5.67285 5.68939 5.71841 5.79586 5.99046 6.26020 6.35179 6.45017 6.59023 6.71633 6.73233 6.85916 6.95968 7.04385 7.30677 7.44008 7.56226 7.60792 7.71787 7.83966 8.28258 8.39109 8.87643 9.46470 10.91288 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.020859 B = 0.004011 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.996789 B = 6978.991087 C = 7740.813147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 S -0.058 6.058 3 C 0.186 3.814 4 C -0.275 4.275 5 C 0.458 3.542 6 N -0.697 5.697 7 C 0.157 3.843 8 H 0.075 0.925 9 C -0.120 4.120 10 C -0.013 4.013 11 C -0.492 4.492 12 C 0.078 3.922 13 N -0.888 5.888 14 Si 0.888 3.112 15 H -0.278 1.278 16 H -0.289 1.289 17 H -0.266 1.266 18 C 0.014 3.986 19 C -0.113 4.113 20 N -0.589 5.589 21 C 0.368 3.632 22 C -0.080 4.080 23 N -0.576 5.576 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.098 0.902 27 H 0.148 0.852 28 H 0.404 0.596 29 H 0.036 0.964 30 H 0.056 0.944 31 H 0.033 0.967 32 H 0.019 0.981 33 H 0.265 0.735 34 H 0.062 0.938 35 H 0.007 0.993 36 H 0.057 0.943 37 H 0.038 0.962 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.673 -0.986 1.152 18.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 S 0.180 5.820 3 C -0.066 4.066 4 C -0.311 4.311 5 C 0.212 3.788 6 N -0.325 5.325 7 C 0.054 3.946 8 H 0.093 0.907 9 C -0.159 4.159 10 C -0.051 4.051 11 C -0.511 4.511 12 C -0.125 4.125 13 N -0.525 5.525 14 Si 0.716 3.284 15 H -0.204 1.204 16 H -0.216 1.216 17 H -0.191 1.191 18 C -0.024 4.024 19 C -0.152 4.152 20 N -0.316 5.316 21 C 0.095 3.905 22 C -0.139 4.139 23 N -0.301 5.301 24 H 0.106 0.894 25 H 0.107 0.893 26 H 0.117 0.883 27 H 0.166 0.834 28 H 0.239 0.761 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.051 0.949 32 H 0.038 0.962 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.025 0.975 36 H 0.076 0.924 37 H 0.057 0.943 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -18.319 -1.529 1.164 18.420 hybrid contribution 0.256 0.596 -0.979 1.175 sum -18.063 -0.933 0.185 18.088 Atomic orbital electron populations 1.23401 0.94238 1.05700 1.06945 1.85878 1.07529 0.97711 1.90916 1.22993 0.91380 0.98656 0.93572 1.21685 0.97694 0.95554 1.16141 1.18402 0.86393 0.88385 0.85604 1.45247 1.01396 1.10082 1.75815 1.21252 0.83058 0.92379 0.97899 0.90745 1.22043 0.98434 1.00621 0.94789 1.19720 0.93805 0.94375 0.97209 1.20002 0.92217 1.37518 1.01394 1.24839 0.95543 0.94627 0.97509 1.69822 1.00940 1.43762 1.37978 0.86663 0.77126 0.80022 0.84601 1.20403 1.21554 1.19113 1.19336 0.93412 0.93887 0.95755 1.21933 0.95618 0.99971 0.97661 1.67816 0.98535 1.39970 1.25294 1.22749 0.91276 0.88554 0.87925 1.20501 0.92881 0.96968 1.03523 1.68486 1.33639 1.03518 1.24426 0.89354 0.89339 0.88343 0.83444 0.76062 0.94548 0.92508 0.94875 0.96227 0.92472 0.91937 0.97493 0.92432 0.94337 0.89917 0.89819 0.89982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.25 9.68 101.05 0.98 -0.27 16 2 S -0.06 -0.73 22.73 -107.50 -2.44 -3.17 16 3 C 0.19 2.85 7.00 -16.57 -0.12 2.73 16 4 C -0.28 -4.52 8.63 -38.89 -0.34 -4.85 16 5 C 0.46 7.68 7.68 -154.68 -1.19 6.49 16 6 N -0.70 -11.41 5.23 -53.88 -0.28 -11.69 16 7 C 0.16 2.85 2.05 -67.97 -0.14 2.71 16 8 H 0.07 1.37 6.53 -51.93 -0.34 1.03 16 9 C -0.12 -2.34 5.43 -26.63 -0.14 -2.48 16 10 C -0.01 -0.29 5.59 -27.49 -0.15 -0.44 16 11 C -0.49 -12.36 5.51 -98.92 -0.55 -12.90 16 12 C 0.08 2.06 5.46 -17.82 -0.10 1.96 16 13 N -0.89 -24.75 12.73 55.43 0.71 -24.05 16 14 Si 0.89 20.59 27.27 -169.99 -4.64 15.95 16 15 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 16 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.27 -6.00 6.46 56.52 0.37 -5.63 16 18 C 0.01 0.33 5.97 -27.48 -0.16 0.16 16 19 C -0.11 -2.22 5.40 -26.63 -0.14 -2.36 16 20 N -0.59 -9.51 10.36 -10.04 -0.10 -9.62 16 21 C 0.37 5.34 7.64 -157.29 -1.20 4.13 16 22 C -0.08 -0.80 10.31 36.01 0.37 -0.43 16 23 N -0.58 -8.51 9.19 -9.61 -0.09 -8.59 16 24 H 0.09 0.83 8.14 -51.92 -0.42 0.41 16 25 H 0.09 0.84 8.14 -51.92 -0.42 0.42 16 26 H 0.10 0.68 8.14 -51.92 -0.42 0.26 16 27 H 0.15 2.43 6.29 -52.49 -0.33 2.10 16 28 H 0.40 6.17 8.72 -40.82 -0.36 5.81 16 29 H 0.04 0.67 7.70 -51.93 -0.40 0.27 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.03 0.74 4.78 -51.93 -0.25 0.49 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 34 H 0.06 1.62 7.07 -51.93 -0.37 1.25 16 35 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 333.51 15.07 5.03 5.03 Total: -1.00 -27.97 333.51 -10.56 -38.54 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -5.86 Total: 3.15 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -2.88 Total: -5.54 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: 0.23 Total: -53.95 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.64 Total: 15.95 kcal Atomic # 16 Polarization: -0.73 SS G_CDS: -2.44 Total: -3.17 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -27.97 -10.56 -38.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167840500.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.029 kcal (2) G-P(sol) polarization free energy of solvation -27.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds