Wall clock time and date at job start Tue Mar 31 2020 06:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80996 * 1 3 3 C 1.76205 * 99.99993 * 2 1 4 4 C 1.39246 * 120.49083 * 179.97438 * 3 2 1 5 5 C 1.39088 * 118.26151 * 179.97438 * 4 3 2 6 6 N 1.38645 * 120.48158 * 180.02562 * 5 4 3 7 7 C 1.46506 * 119.99948 * 0.02562 * 6 5 4 8 8 H 1.09001 * 109.40678 * 324.58045 * 7 6 5 9 9 C 1.52960 * 109.41198 * 84.36894 * 7 6 5 10 10 C 1.53230 * 109.39851 * 183.70566 * 9 7 6 11 11 C 1.51268 * 108.53936 * 305.37111 * 10 9 7 12 12 C 1.37879 * 120.85090 * 231.32778 * 11 10 9 13 13 N 1.31513 * 119.99883 * 180.02562 * 12 11 10 14 14 Si 1.86796 * 120.00048 * 0.02562 * 12 11 10 15 15 H 1.48497 * 109.47225 * 90.00024 * 14 12 11 16 16 H 1.48500 * 109.47392 * 210.00062 * 14 12 11 17 17 H 1.48503 * 109.47065 * 330.00043 * 14 12 11 18 18 C 1.51270 * 118.30059 * 51.35207 * 11 10 9 19 19 C 1.52960 * 109.41258 * 204.72496 * 7 6 5 20 20 N 1.33218 * 119.03984 * 0.27634 * 5 4 3 21 21 C 1.31742 * 120.88972 * 359.44280 * 20 5 4 22 22 C 1.50700 * 119.03717 * 180.31401 * 21 20 5 23 23 N 1.31735 * 121.92007 * 0.56844 * 21 20 5 24 24 H 1.09002 * 109.47289 * 299.99923 * 1 2 3 25 25 H 1.09001 * 109.47207 * 59.99667 * 1 2 3 26 26 H 1.09001 * 109.47281 * 180.02562 * 1 2 3 27 27 H 1.07997 * 120.86818 * 359.96291 * 4 3 2 28 28 H 0.97005 * 120.00182 * 179.72498 * 6 5 4 29 29 H 1.08993 * 109.48467 * 303.68073 * 9 7 6 30 30 H 1.08995 * 109.47992 * 63.73055 * 9 7 6 31 31 H 1.09001 * 109.62786 * 185.65576 * 10 9 7 32 32 H 1.09002 * 109.78390 * 65.18640 * 10 9 7 33 33 H 0.96994 * 120.00141 * 180.02562 * 13 12 11 34 34 H 1.08996 * 109.62874 * 188.93981 * 18 11 10 35 35 H 1.08994 * 109.78302 * 68.45488 * 18 11 10 36 36 H 1.08999 * 109.48174 * 296.27018 * 19 7 6 37 37 H 1.08999 * 109.48294 * 56.31506 * 19 7 6 38 38 H 1.09004 * 109.46800 * 270.24946 * 22 21 20 39 39 H 1.09004 * 109.47387 * 30.25176 * 22 21 20 40 40 H 1.09003 * 109.47383 * 150.25424 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 6 3.4203 2.2227 0.0005 5 6 3.6084 3.6008 0.0000 6 7 4.8873 4.1361 -0.0001 7 6 6.0529 3.2485 -0.0001 8 1 5.8335 2.3626 0.5958 9 6 6.3715 2.8279 -1.4358 10 6 7.5320 1.8273 -1.4272 11 6 8.6961 2.4471 -0.6863 12 6 9.9541 2.4831 -1.2495 13 7 10.9544 3.0256 -0.5902 14 14 10.2377 1.7613 -2.9489 15 1 10.0193 2.8116 -3.9756 16 1 11.6308 1.2562 -3.0460 17 1 9.2885 0.6420 -3.1760 18 6 8.4448 3.0259 0.6885 19 6 7.2512 3.9831 0.6033 20 7 2.5418 4.3990 0.0045 21 6 1.3229 3.8992 -0.0014 22 6 0.1462 4.8407 -0.0031 23 7 1.1027 2.6004 -0.0010 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 4.2638 1.5484 0.0016 28 1 5.0104 5.0983 -0.0045 29 1 5.4929 2.3617 -1.8815 30 1 6.6526 3.7055 -2.0178 31 1 7.8284 1.6016 -2.4516 32 1 7.2246 0.9101 -0.9247 33 1 11.8393 3.0513 -0.9865 34 1 9.3276 3.5705 1.0234 35 1 8.2211 2.2235 1.3913 36 1 7.5114 4.8333 -0.0271 37 1 6.9960 4.3357 1.6026 38 1 -0.1385 5.0682 1.0242 39 1 0.4190 5.7624 -0.5172 40 1 -0.6931 4.3725 -0.5175 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167840500.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:40 Heat of formation + Delta-G solvation = 13.516178 kcal Electronic energy + Delta-G solvation = -21165.861425 eV Core-core repulsion = 18105.192619 eV Total energy + Delta-G solvation = -3060.668806 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.88819 -39.39904 -36.50627 -34.50034 -33.97897 -32.31219 -31.46352 -29.94261 -29.15175 -28.80881 -25.21289 -24.40500 -23.34436 -22.67607 -21.22526 -19.28127 -18.88437 -17.96739 -16.99741 -16.46550 -16.38507 -16.26900 -16.15379 -15.28564 -15.09778 -14.62890 -14.47136 -14.43105 -14.32597 -14.00683 -13.75883 -13.44937 -13.30971 -13.19587 -12.95468 -12.78974 -12.60102 -12.33122 -12.10985 -11.89052 -11.75139 -11.52697 -11.46068 -11.09095 -10.87603 -10.59429 -10.54592 -10.28483 -9.20489 -8.75235 -8.18091 -6.12209 -0.07993 0.28890 0.40576 1.23806 1.37869 1.42360 1.49909 1.97473 2.40329 2.75723 3.10894 3.20095 3.58415 3.90583 3.93013 4.11545 4.27618 4.35000 4.37364 4.42065 4.50249 4.66916 4.75873 4.78905 4.83295 4.86979 4.92874 4.97943 5.02963 5.08907 5.19187 5.22109 5.40836 5.55043 5.61151 5.71450 5.74338 5.80773 6.18124 6.32366 6.58078 6.94213 7.22071 7.46257 8.92641 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.020859 B = 0.004011 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.996789 B = 6978.991087 C = 7740.813147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.063 6.063 3 C 0.179 3.821 4 C -0.296 4.296 5 C 0.448 3.552 6 N -0.695 5.695 7 C 0.173 3.827 8 H 0.074 0.926 9 C -0.111 4.111 10 C -0.015 4.015 11 C -0.499 4.499 12 C 0.025 3.975 13 N -0.929 5.929 14 Si 0.937 3.063 15 H -0.276 1.276 16 H -0.293 1.293 17 H -0.254 1.254 18 C 0.011 3.989 19 C -0.102 4.102 20 N -0.601 5.601 21 C 0.358 3.642 22 C -0.076 4.076 23 N -0.574 5.574 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.126 0.874 27 H 0.142 0.858 28 H 0.409 0.591 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.032 0.968 32 H 0.025 0.975 33 H 0.263 0.737 34 H 0.031 0.969 35 H 0.005 0.995 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.633 -1.463 0.643 21.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 S 0.175 5.825 3 C -0.073 4.073 4 C -0.331 4.331 5 C 0.203 3.797 6 N -0.324 5.324 7 C 0.069 3.931 8 H 0.092 0.908 9 C -0.150 4.150 10 C -0.053 4.053 11 C -0.518 4.518 12 C -0.173 4.173 13 N -0.569 5.569 14 Si 0.764 3.236 15 H -0.201 1.201 16 H -0.220 1.220 17 H -0.178 1.178 18 C -0.027 4.027 19 C -0.140 4.140 20 N -0.329 5.329 21 C 0.086 3.914 22 C -0.135 4.135 23 N -0.299 5.299 24 H 0.108 0.892 25 H 0.107 0.893 26 H 0.145 0.855 27 H 0.160 0.840 28 H 0.245 0.755 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.043 0.957 33 H 0.072 0.928 34 H 0.050 0.950 35 H 0.023 0.977 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.117 0.883 39 H 0.110 0.890 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -21.321 -2.006 0.652 21.425 hybrid contribution 1.028 0.682 -0.752 1.445 sum -20.293 -1.323 -0.100 20.336 Atomic orbital electron populations 1.23502 0.91313 1.07559 1.06987 1.85925 1.10732 0.95650 1.90176 1.23389 0.91233 1.00179 0.92543 1.21715 0.98216 0.95432 1.17742 1.18516 0.86506 0.88757 0.85965 1.44918 1.00964 1.09962 1.76562 1.20869 0.83092 0.92346 0.96775 0.90815 1.21899 0.97737 0.99605 0.95769 1.19729 0.93749 0.95100 0.96710 1.20598 0.92940 1.36329 1.01962 1.25557 0.95670 0.95494 1.00612 1.69953 1.01288 1.46074 1.39571 0.85860 0.76916 0.79746 0.81114 1.20137 1.21958 1.17789 1.19284 0.93944 0.94309 0.95212 1.21700 0.94695 0.98771 0.98838 1.67885 0.98941 1.40116 1.25971 1.23665 0.91922 0.89274 0.86569 1.20651 0.91556 0.96373 1.04877 1.68619 1.33250 1.03649 1.24399 0.89227 0.89271 0.85542 0.84006 0.75461 0.93221 0.93211 0.94983 0.95662 0.92787 0.95022 0.97672 0.93047 0.92532 0.88291 0.89042 0.88344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.96 9.68 113.37 1.10 -0.86 16 2 S -0.06 -1.45 22.73 -56.49 -1.28 -2.73 16 3 C 0.18 5.19 7.00 84.72 0.59 5.79 16 4 C -0.30 -9.38 8.63 22.72 0.20 -9.18 16 5 C 0.45 14.45 7.68 132.93 1.02 15.47 16 6 N -0.69 -21.93 5.23 -324.39 -1.70 -23.63 16 7 C 0.17 6.11 2.05 44.96 0.09 6.20 16 8 H 0.07 2.65 6.53 -2.39 -0.02 2.63 16 9 C -0.11 -4.20 5.43 30.66 0.17 -4.03 16 10 C -0.01 -0.64 5.59 30.11 0.17 -0.47 16 11 C -0.50 -25.19 5.51 -16.17 -0.09 -25.28 16 12 C 0.03 1.35 5.46 84.66 0.46 1.81 16 13 N -0.93 -53.35 12.73 21.45 0.27 -53.08 16 14 Si 0.94 42.40 27.27 68.60 1.87 44.27 16 15 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 16 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 17 H -0.25 -10.84 6.46 99.48 0.64 -10.20 16 18 C 0.01 0.50 5.97 30.11 0.18 0.68 16 19 C -0.10 -3.94 5.40 30.66 0.17 -3.78 16 20 N -0.60 -18.47 10.36 -185.67 -1.92 -20.39 16 21 C 0.36 9.61 7.64 138.78 1.06 10.67 16 22 C -0.08 -1.30 10.31 71.24 0.73 -0.56 16 23 N -0.57 -15.74 9.19 -184.31 -1.69 -17.44 16 24 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.14 4.57 6.29 -2.91 -0.02 4.55 16 28 H 0.41 12.00 8.72 -92.70 -0.81 11.20 16 29 H 0.05 1.75 7.70 -2.39 -0.02 1.74 16 30 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.03 1.38 4.78 -2.39 -0.01 1.37 16 32 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 34 H 0.03 1.69 7.07 -2.39 -0.02 1.67 16 35 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 36 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 40 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -60.24 333.51 1.58 -58.67 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 0.18 Total: 17.86 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: 5.85 Total: -3.54 kcal Atomic # 7 Polarization: -109.49 SS G_CDS: -5.04 Total: -114.53 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 1.87 Total: 44.27 kcal Atomic # 16 Polarization: -1.45 SS G_CDS: -1.28 Total: -2.73 kcal Total: -60.24 1.58 -58.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167840500.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.186 kcal (2) G-P(sol) polarization free energy of solvation -60.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds