Wall clock time and date at job start Tue Mar 31 2020 06:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81000 * 1 3 3 C 1.76207 * 99.99487 * 2 1 4 4 N 1.32494 * 119.14148 * 359.97438 * 3 2 1 5 5 C 1.32257 * 120.80939 * 180.02562 * 4 3 2 6 6 C 1.39211 * 119.11374 * 359.75053 * 5 4 3 7 7 N 1.40091 * 120.78242 * 180.27747 * 6 5 4 8 8 C 1.46499 * 120.00451 * 0.23955 * 7 6 5 9 9 H 1.08996 * 109.41137 * 35.14010 * 8 7 6 10 10 C 1.52958 * 109.41204 * 155.00387 * 8 7 6 11 11 C 1.53239 * 109.40295 * 183.70676 * 10 8 7 12 12 C 1.51269 * 108.53141 * 305.36835 * 11 10 8 13 13 C 1.37875 * 120.85101 * 231.32324 * 12 11 10 14 14 N 1.31518 * 119.99476 * 0.02562 * 13 12 11 15 15 Si 1.86799 * 120.00248 * 180.02562 * 13 12 11 16 16 H 1.48502 * 109.46855 * 90.00329 * 15 13 12 17 17 H 1.48497 * 109.47206 * 209.99944 * 15 13 12 18 18 H 1.48498 * 109.47147 * 330.00099 * 15 13 12 19 19 C 1.51274 * 118.30248 * 51.35386 * 12 11 10 20 20 C 1.52959 * 109.41515 * 275.35386 * 8 7 6 21 21 C 1.39157 * 118.42562 * 0.51292 * 6 5 4 22 22 C 1.50703 * 120.44101 * 179.76380 * 21 6 5 23 23 N 1.32288 * 119.11664 * 359.48368 * 21 6 5 24 24 H 1.08997 * 109.47287 * 60.00495 * 1 2 3 25 25 H 1.09007 * 109.46457 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47350 * 299.99813 * 1 2 3 27 27 H 1.07996 * 120.43872 * 179.97438 * 5 4 3 28 28 H 0.97006 * 119.99962 * 180.24507 * 7 6 5 29 29 H 1.08999 * 109.48046 * 303.67772 * 10 8 7 30 30 H 1.08992 * 109.48771 * 63.72720 * 10 8 7 31 31 H 1.09001 * 109.62661 * 65.08090 * 11 10 8 32 32 H 1.08996 * 109.62390 * 185.46405 * 11 10 8 33 33 H 0.97009 * 119.99536 * 179.97438 * 14 13 12 34 34 H 1.08995 * 109.62646 * 68.35985 * 19 12 11 35 35 H 1.08993 * 109.62347 * 188.74427 * 19 12 11 36 36 H 1.09003 * 109.48461 * 296.27938 * 20 8 7 37 37 H 1.09004 * 109.48200 * 56.31406 * 20 8 7 38 38 H 1.09002 * 109.47152 * 269.71902 * 22 21 6 39 39 H 1.09001 * 109.46980 * 149.72003 * 22 21 6 40 40 H 1.09004 * 109.47113 * 29.71984 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1158 1.7353 0.0000 4 7 1.0881 2.5716 -0.0005 5 6 1.2797 3.8802 -0.0010 6 6 2.5812 4.3743 0.0042 7 7 2.8243 5.7539 0.0097 8 6 1.7020 6.6956 0.0152 9 1 0.8850 6.2819 0.6063 10 6 2.1539 8.0214 0.6297 11 6 0.9573 8.9744 0.7204 12 6 0.3399 9.1030 -0.6545 13 6 0.0992 10.3425 -1.2084 14 7 0.4077 11.4324 -0.5401 15 14 -0.6650 10.4738 -2.9079 16 1 -2.1441 10.5175 -2.7834 17 1 -0.1872 11.7135 -3.5710 18 1 -0.2712 9.2946 -3.7201 19 6 -0.0074 7.8370 -1.4061 20 6 1.2240 6.9253 -1.4195 21 6 3.6348 3.4653 -0.0010 22 6 5.0616 3.9502 -0.0010 23 7 3.3672 2.1697 -0.0004 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3632 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.4376 4.5564 -0.0019 28 1 3.7358 6.0858 0.0098 29 1 2.5522 7.8421 1.6284 30 1 2.9271 8.4672 0.0043 31 1 0.2210 8.5724 1.4163 32 1 1.2932 9.9517 1.0669 33 1 0.2387 12.3045 -0.9299 34 1 -0.8330 7.3298 -0.9070 35 1 -0.2941 8.0849 -2.4280 36 1 2.0194 7.3970 -1.9966 37 1 0.9635 5.9691 -1.8734 38 1 5.4058 4.0667 -1.0287 39 1 5.6920 3.2247 0.5133 40 1 5.1192 4.9101 0.5124 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167846054.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:53 Heat of formation + Delta-G solvation = 28.515408 kcal Electronic energy + Delta-G solvation = -21236.479070 eV Core-core repulsion = 18176.460679 eV Total energy + Delta-G solvation = -3060.018391 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.88222 -37.85382 -35.06558 -34.15513 -32.20305 -30.41696 -29.78843 -29.25807 -28.05710 -27.05300 -23.75645 -23.00437 -21.75402 -21.55097 -19.71960 -17.98390 -17.68331 -16.78361 -16.07301 -15.31869 -15.08660 -14.84647 -14.56221 -13.92367 -13.68014 -13.48763 -13.29526 -13.01128 -12.89874 -12.56027 -12.53519 -12.46450 -12.25752 -11.96942 -11.49194 -11.24957 -11.13898 -10.79825 -10.60848 -10.52153 -10.40198 -10.30375 -10.11827 -9.59408 -9.19588 -9.06639 -8.86625 -8.59123 -8.35671 -7.03228 -6.21605 -4.13764 1.12031 1.18796 1.40363 2.21116 3.19598 3.28243 3.28942 3.48734 3.79882 4.23433 4.28324 4.51299 4.76123 4.93168 5.06377 5.09922 5.17282 5.31386 5.45784 5.47075 5.65962 5.69727 5.75953 5.89123 5.93839 6.19253 6.31065 6.40949 6.54345 6.62695 6.69190 6.85132 6.96821 7.02528 7.25743 7.35432 7.52421 7.56064 7.67097 7.77794 8.06519 8.24461 8.83824 9.42640 10.87669 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.024187 B = 0.003696 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.374829 B = 7573.549127 C = 8213.627000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 S -0.030 6.030 3 C 0.222 3.778 4 N -0.483 5.483 5 C 0.082 3.918 6 C 0.133 3.867 7 N -0.719 5.719 8 C 0.154 3.846 9 H 0.070 0.930 10 C -0.113 4.113 11 C 0.014 3.986 12 C -0.491 4.491 13 C 0.078 3.922 14 N -0.888 5.888 15 Si 0.887 3.113 16 H -0.277 1.277 17 H -0.289 1.289 18 H -0.264 1.264 19 C -0.020 4.020 20 C -0.118 4.118 21 C 0.101 3.899 22 C -0.095 4.095 23 N -0.461 5.461 24 H 0.087 0.913 25 H 0.100 0.900 26 H 0.087 0.913 27 H 0.171 0.829 28 H 0.399 0.601 29 H 0.037 0.963 30 H 0.056 0.944 31 H 0.006 0.994 32 H 0.061 0.939 33 H 0.265 0.735 34 H 0.018 0.982 35 H 0.037 0.963 36 H 0.055 0.945 37 H 0.033 0.967 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.360 -15.569 1.030 16.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 S 0.201 5.799 3 C -0.155 4.155 4 N -0.199 5.199 5 C -0.092 4.092 6 C 0.018 3.982 7 N -0.345 5.345 8 C 0.051 3.949 9 H 0.088 0.912 10 C -0.151 4.151 11 C -0.024 4.024 12 C -0.510 4.510 13 C -0.125 4.125 14 N -0.525 5.525 15 Si 0.715 3.285 16 H -0.203 1.203 17 H -0.216 1.216 18 H -0.190 1.190 19 C -0.058 4.058 20 C -0.157 4.157 21 C -0.055 4.055 22 C -0.153 4.153 23 N -0.177 5.177 24 H 0.106 0.894 25 H 0.118 0.882 26 H 0.106 0.894 27 H 0.188 0.812 28 H 0.235 0.765 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.024 0.976 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.036 0.964 35 H 0.055 0.945 36 H 0.074 0.926 37 H 0.052 0.948 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.731 -17.179 1.037 17.848 hybrid contribution -0.781 2.422 -0.975 2.725 sum 3.950 -14.757 0.062 15.277 Atomic orbital electron populations 1.23449 0.94428 1.05710 1.07011 1.85444 1.06590 0.95004 1.92904 1.24152 0.86885 0.99663 1.04843 1.68477 1.34469 1.03672 1.13329 1.22818 0.95220 0.91221 0.99971 1.19479 0.95502 0.86845 0.96331 1.45424 1.09949 1.00789 1.78381 1.21166 0.87215 0.88970 0.97533 0.91171 1.21909 1.01387 0.94350 0.97485 1.19336 0.91494 0.95822 0.95769 1.20001 1.40334 0.89430 1.01266 1.24847 0.94900 0.95302 0.97498 1.69831 1.46909 0.97799 1.38000 0.86683 0.79801 0.77225 0.84791 1.20307 1.21584 1.18978 1.19801 0.93015 0.95357 0.97585 1.22015 1.00562 0.98219 0.94918 1.21177 0.95935 0.87734 1.00702 1.20565 0.90140 1.01355 1.03244 1.68018 1.21532 1.15507 1.12616 0.89392 0.88172 0.89410 0.81207 0.76469 0.94463 0.92559 0.97577 0.92022 0.92468 0.96384 0.94450 0.92590 0.94801 0.90177 0.90008 0.90799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.61 101.05 0.97 -0.38 16 2 S -0.03 -0.38 22.89 -107.50 -2.46 -2.84 16 3 C 0.22 3.48 7.85 -90.97 -0.71 2.77 16 4 N -0.48 -7.63 9.12 -13.33 -0.12 -7.75 16 5 C 0.08 1.28 10.11 -17.01 -0.17 1.11 16 6 C 0.13 1.97 6.66 -83.38 -0.56 1.41 16 7 N -0.72 -10.24 5.18 -51.95 -0.27 -10.50 16 8 C 0.15 2.60 2.06 -67.97 -0.14 2.46 16 9 H 0.07 1.20 6.57 -51.93 -0.34 0.86 16 10 C -0.11 -2.10 5.40 -26.63 -0.14 -2.24 16 11 C 0.01 0.31 5.96 -27.48 -0.16 0.15 16 12 C -0.49 -12.05 5.51 -98.92 -0.55 -12.59 16 13 C 0.08 2.02 5.46 -17.82 -0.10 1.92 16 14 N -0.89 -24.42 12.74 55.43 0.71 -23.71 16 15 Si 0.89 20.19 27.53 -169.99 -4.68 15.51 16 16 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 17 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.26 -5.83 6.11 56.52 0.35 -5.49 16 19 C -0.02 -0.42 5.59 -27.48 -0.15 -0.57 16 20 C -0.12 -2.19 5.47 -26.63 -0.15 -2.34 16 21 C 0.10 1.44 6.84 -82.05 -0.56 0.88 16 22 C -0.10 -1.01 9.82 36.01 0.35 -0.65 16 23 N -0.46 -7.30 10.33 -9.57 -0.10 -7.40 16 24 H 0.09 0.92 8.11 -51.92 -0.42 0.49 16 25 H 0.10 0.72 8.14 -51.91 -0.42 0.30 16 26 H 0.09 0.90 8.11 -51.92 -0.42 0.48 16 27 H 0.17 2.54 6.38 -52.49 -0.33 2.21 16 28 H 0.40 4.99 6.74 -40.82 -0.28 4.71 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 32 H 0.06 1.56 7.08 -51.93 -0.37 1.20 16 33 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 34 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.04 0.82 4.59 -51.93 -0.24 0.58 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.03 0.59 7.81 -51.93 -0.41 0.18 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.67 6.64 -51.93 -0.34 0.33 16 LS Contribution 329.94 15.07 4.97 4.97 Total: -1.00 -27.83 329.94 -9.74 -37.57 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -5.72 Total: 2.24 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: -2.07 Total: -8.08 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: 0.22 Total: -49.37 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.68 Total: 15.51 kcal Atomic # 16 Polarization: -0.38 SS G_CDS: -2.46 Total: -2.84 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.83 -9.74 -37.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167846054.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.084 kcal (2) G-P(sol) polarization free energy of solvation -27.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds