Wall clock time and date at job start Tue Mar 31 2020 06:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81000 * 1 3 3 C 1.76207 * 99.99487 * 2 1 4 4 N 1.32494 * 119.14148 * 359.97438 * 3 2 1 5 5 C 1.32257 * 120.80939 * 180.02562 * 4 3 2 6 6 C 1.39211 * 119.11374 * 359.75053 * 5 4 3 7 7 N 1.40091 * 120.78242 * 180.27747 * 6 5 4 8 8 C 1.46499 * 120.00451 * 0.23955 * 7 6 5 9 9 H 1.08996 * 109.41137 * 35.14010 * 8 7 6 10 10 C 1.52958 * 109.41204 * 155.00387 * 8 7 6 11 11 C 1.53239 * 109.40295 * 183.70676 * 10 8 7 12 12 C 1.51269 * 108.53141 * 305.36835 * 11 10 8 13 13 C 1.37875 * 120.85101 * 231.32324 * 12 11 10 14 14 N 1.31518 * 119.99476 * 0.02562 * 13 12 11 15 15 Si 1.86799 * 120.00248 * 180.02562 * 13 12 11 16 16 H 1.48502 * 109.46855 * 90.00329 * 15 13 12 17 17 H 1.48497 * 109.47206 * 209.99944 * 15 13 12 18 18 H 1.48498 * 109.47147 * 330.00099 * 15 13 12 19 19 C 1.51274 * 118.30248 * 51.35386 * 12 11 10 20 20 C 1.52959 * 109.41515 * 275.35386 * 8 7 6 21 21 C 1.39157 * 118.42562 * 0.51292 * 6 5 4 22 22 C 1.50703 * 120.44101 * 179.76380 * 21 6 5 23 23 N 1.32288 * 119.11664 * 359.48368 * 21 6 5 24 24 H 1.08997 * 109.47287 * 60.00495 * 1 2 3 25 25 H 1.09007 * 109.46457 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47350 * 299.99813 * 1 2 3 27 27 H 1.07996 * 120.43872 * 179.97438 * 5 4 3 28 28 H 0.97006 * 119.99962 * 180.24507 * 7 6 5 29 29 H 1.08999 * 109.48046 * 303.67772 * 10 8 7 30 30 H 1.08992 * 109.48771 * 63.72720 * 10 8 7 31 31 H 1.09001 * 109.62661 * 65.08090 * 11 10 8 32 32 H 1.08996 * 109.62390 * 185.46405 * 11 10 8 33 33 H 0.97009 * 119.99536 * 179.97438 * 14 13 12 34 34 H 1.08995 * 109.62646 * 68.35985 * 19 12 11 35 35 H 1.08993 * 109.62347 * 188.74427 * 19 12 11 36 36 H 1.09003 * 109.48461 * 296.27938 * 20 8 7 37 37 H 1.09004 * 109.48200 * 56.31406 * 20 8 7 38 38 H 1.09002 * 109.47152 * 269.71902 * 22 21 6 39 39 H 1.09001 * 109.46980 * 149.72003 * 22 21 6 40 40 H 1.09004 * 109.47113 * 29.71984 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1158 1.7353 0.0000 4 7 1.0881 2.5716 -0.0005 5 6 1.2797 3.8802 -0.0010 6 6 2.5812 4.3743 0.0042 7 7 2.8243 5.7539 0.0097 8 6 1.7020 6.6956 0.0152 9 1 0.8850 6.2819 0.6063 10 6 2.1539 8.0214 0.6297 11 6 0.9573 8.9744 0.7204 12 6 0.3399 9.1030 -0.6545 13 6 0.0992 10.3425 -1.2084 14 7 0.4077 11.4324 -0.5401 15 14 -0.6650 10.4738 -2.9079 16 1 -2.1441 10.5175 -2.7834 17 1 -0.1872 11.7135 -3.5710 18 1 -0.2712 9.2946 -3.7201 19 6 -0.0074 7.8370 -1.4061 20 6 1.2240 6.9253 -1.4195 21 6 3.6348 3.4653 -0.0010 22 6 5.0616 3.9502 -0.0010 23 7 3.3672 2.1697 -0.0004 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3632 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.4376 4.5564 -0.0019 28 1 3.7358 6.0858 0.0098 29 1 2.5522 7.8421 1.6284 30 1 2.9271 8.4672 0.0043 31 1 0.2210 8.5724 1.4163 32 1 1.2932 9.9517 1.0669 33 1 0.2387 12.3045 -0.9299 34 1 -0.8330 7.3298 -0.9070 35 1 -0.2941 8.0849 -2.4280 36 1 2.0194 7.3970 -1.9966 37 1 0.9635 5.9691 -1.8734 38 1 5.4058 4.0667 -1.0287 39 1 5.6920 3.2247 0.5133 40 1 5.1192 4.9101 0.5124 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167846054.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:53 Heat of formation + Delta-G solvation = 12.877879 kcal Electronic energy + Delta-G solvation = -21237.157164 eV Core-core repulsion = 18176.460679 eV Total energy + Delta-G solvation = -3060.696485 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.01405 -39.30007 -36.45536 -35.34633 -33.88657 -31.82604 -31.30276 -30.13120 -29.15797 -28.48889 -25.09085 -24.12355 -23.35122 -23.13163 -21.25220 -19.17207 -18.79291 -18.10407 -17.68204 -16.48859 -16.37473 -16.24638 -15.99890 -15.21077 -14.91485 -14.59956 -14.47088 -14.38277 -14.15940 -13.89743 -13.82852 -13.61475 -13.37481 -13.28497 -12.93554 -12.79807 -12.67497 -12.31817 -12.07438 -11.92507 -11.73393 -11.54272 -11.50885 -11.29471 -10.85893 -10.60029 -10.51082 -10.28496 -9.46922 -8.17581 -8.12268 -6.11238 -0.00313 0.03548 0.39872 1.31305 1.38376 1.42337 1.48690 2.27186 2.40365 2.66277 3.11906 3.19074 3.43643 3.67690 3.80649 3.99983 4.17362 4.37679 4.40672 4.43791 4.48516 4.68701 4.70876 4.75169 4.86627 4.91110 4.96829 5.00261 5.06457 5.07268 5.23206 5.26420 5.33263 5.58092 5.63502 5.75551 5.82340 5.86394 6.14469 6.33645 6.66161 6.93253 6.95932 7.47219 8.93222 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.024187 B = 0.003696 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.374829 B = 7573.549127 C = 8213.627000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 S -0.032 6.032 3 C 0.206 3.794 4 N -0.493 5.493 5 C 0.069 3.931 6 C 0.127 3.873 7 N -0.709 5.709 8 C 0.169 3.831 9 H 0.071 0.929 10 C -0.101 4.101 11 C 0.009 3.991 12 C -0.496 4.496 13 C 0.024 3.976 14 N -0.931 5.931 15 Si 0.935 3.065 16 H -0.277 1.277 17 H -0.295 1.295 18 H -0.250 1.250 19 C -0.023 4.023 20 C -0.110 4.110 21 C 0.103 3.897 22 C -0.095 4.095 23 N -0.480 5.480 24 H 0.082 0.918 25 H 0.131 0.869 26 H 0.083 0.917 27 H 0.173 0.827 28 H 0.410 0.590 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.003 0.997 32 H 0.029 0.971 33 H 0.262 0.738 34 H 0.025 0.975 35 H 0.033 0.967 36 H 0.049 0.951 37 H 0.048 0.952 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.922 -17.664 0.541 18.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 S 0.199 5.801 3 C -0.170 4.170 4 N -0.210 5.210 5 C -0.105 4.105 6 C 0.013 3.987 7 N -0.338 5.338 8 C 0.065 3.935 9 H 0.089 0.911 10 C -0.139 4.139 11 C -0.029 4.029 12 C -0.515 4.515 13 C -0.175 4.175 14 N -0.571 5.571 15 Si 0.762 3.238 16 H -0.203 1.203 17 H -0.222 1.222 18 H -0.175 1.175 19 C -0.061 4.061 20 C -0.149 4.149 21 C -0.053 4.053 22 C -0.152 4.152 23 N -0.196 5.196 24 H 0.102 0.898 25 H 0.149 0.851 26 H 0.102 0.898 27 H 0.190 0.810 28 H 0.248 0.752 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.021 0.979 32 H 0.047 0.953 33 H 0.071 0.929 34 H 0.043 0.957 35 H 0.052 0.948 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.112 0.888 39 H 0.107 0.893 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.300 -19.309 0.543 20.031 hybrid contribution -0.975 2.961 -0.757 3.208 sum 4.325 -16.348 -0.213 16.912 Atomic orbital electron populations 1.23519 0.92147 1.07570 1.06542 1.85419 1.09097 0.93203 1.92406 1.24712 0.87022 1.01003 1.04306 1.68503 1.34617 1.03835 1.14045 1.22953 0.95782 0.91439 1.00334 1.19458 0.95486 0.86854 0.96903 1.45035 1.09678 1.00202 1.78861 1.20781 0.87989 0.88533 0.96218 0.91110 1.21669 0.99187 0.94204 0.98858 1.19296 0.93146 0.95400 0.95076 1.20627 1.38620 0.90396 1.01869 1.25558 0.95978 0.95391 1.00524 1.69965 1.49394 0.98144 1.39566 0.85894 0.78939 0.77285 0.81671 1.20274 1.22183 1.17471 1.19822 0.94661 0.94687 0.96910 1.21878 0.98873 0.98039 0.96134 1.21767 0.97475 0.87261 0.98768 1.20702 0.87880 1.02211 1.04420 1.68141 1.21658 1.16227 1.13600 0.89848 0.85104 0.89780 0.81028 0.75180 0.92440 0.93015 0.97868 0.95272 0.92892 0.95692 0.94814 0.93237 0.93299 0.88842 0.89306 0.89124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.28 9.61 113.37 1.09 -1.19 16 2 S -0.03 -0.75 22.89 -56.49 -1.29 -2.05 16 3 C 0.21 6.17 7.85 180.47 1.42 7.59 16 4 N -0.49 -14.89 9.12 -196.08 -1.79 -16.68 16 5 C 0.07 2.02 10.11 84.86 0.86 2.87 16 6 C 0.13 3.47 6.66 38.28 0.25 3.72 16 7 N -0.71 -18.29 5.18 -318.27 -1.65 -19.93 16 8 C 0.17 5.33 2.06 44.96 0.09 5.43 16 9 H 0.07 2.27 6.57 -2.39 -0.02 2.26 16 10 C -0.10 -3.60 5.40 30.66 0.17 -3.44 16 11 C 0.01 0.41 5.96 30.11 0.18 0.59 16 12 C -0.50 -24.24 5.51 -16.17 -0.09 -24.33 16 13 C 0.02 1.25 5.46 84.65 0.46 1.71 16 14 N -0.93 -52.62 12.74 21.45 0.27 -52.35 16 15 Si 0.94 41.51 27.53 68.60 1.89 43.40 16 16 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 17 H -0.30 -13.25 7.11 99.48 0.71 -12.54 16 18 H -0.25 -10.41 6.11 99.48 0.61 -9.80 16 19 C -0.02 -0.95 5.59 30.11 0.17 -0.78 16 20 C -0.11 -3.85 5.47 30.66 0.17 -3.68 16 21 C 0.10 2.72 6.84 42.71 0.29 3.01 16 22 C -0.09 -1.71 9.82 71.24 0.70 -1.01 16 23 N -0.48 -14.38 10.33 -184.18 -1.90 -16.28 16 24 H 0.08 1.59 8.11 -2.40 -0.02 1.57 16 25 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.08 1.58 8.11 -2.40 -0.02 1.56 16 27 H 0.17 4.85 6.38 -2.91 -0.02 4.83 16 28 H 0.41 8.94 6.74 -92.70 -0.63 8.31 16 29 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 32 H 0.03 1.51 7.08 -2.39 -0.02 1.49 16 33 H 0.26 14.21 8.31 -92.70 -0.77 13.44 16 34 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.03 1.41 4.59 -2.39 -0.01 1.40 16 36 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.05 1.58 7.81 -2.38 -0.02 1.56 16 38 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.09 1.33 6.64 -2.38 -0.02 1.31 16 Total: -1.00 -60.09 329.94 1.62 -58.47 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 0.33 Total: 14.92 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: 5.76 Total: -9.51 kcal Atomic # 7 Polarization: -100.18 SS G_CDS: -5.06 Total: -105.24 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 1.89 Total: 43.40 kcal Atomic # 16 Polarization: -0.75 SS G_CDS: -1.29 Total: -2.05 kcal Total: -60.09 1.62 -58.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167846054.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.349 kcal (2) G-P(sol) polarization free energy of solvation -60.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds