Wall clock time and date at job start Tue Mar 31 2020 07:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46659 * 2 1 4 4 C 1.53002 * 109.46999 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47225 * 179.97438 * 4 3 2 6 6 C 1.36934 * 120.00097 * 270.00025 * 5 4 3 7 7 H 1.07993 * 120.00206 * 141.81722 * 6 5 4 8 8 C 1.39001 * 119.99595 * 321.82173 * 6 5 4 9 9 N 1.31396 * 120.00126 * 341.07362 * 8 6 5 10 10 Si 1.86804 * 119.99804 * 161.07964 * 8 6 5 11 11 H 1.48505 * 109.47024 * 89.99806 * 10 8 6 12 12 H 1.48502 * 109.46947 * 209.99589 * 10 8 6 13 13 H 1.48494 * 109.47025 * 329.99795 * 10 8 6 14 14 C 1.34773 * 120.00281 * 90.00034 * 5 4 3 15 15 O 1.21654 * 119.99893 * 5.33166 * 14 5 4 16 16 C 1.47198 * 120.00439 * 185.33883 * 14 5 4 17 17 C 1.39898 * 120.13910 * 271.99683 * 16 14 5 18 18 C 1.50701 * 119.95960 * 0.02562 * 17 16 14 19 19 C 1.36546 * 120.08007 * 180.29190 * 17 16 14 20 20 C 1.39178 * 120.37852 * 359.45578 * 19 17 16 21 21 O 1.35709 * 119.86002 * 180.29538 * 20 19 17 22 22 C 1.38725 * 120.28111 * 0.54618 * 20 19 17 23 23 C 1.38468 * 119.90896 * 359.72635 * 22 20 19 24 24 O 1.35659 * 120.18228 * 179.97438 * 23 22 20 25 25 H 1.09003 * 109.47286 * 299.99686 * 1 2 3 26 26 H 1.09001 * 109.47459 * 60.00331 * 1 2 3 27 27 H 1.09007 * 109.46898 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47286 * 240.00314 * 2 1 3 29 29 H 1.09001 * 109.47459 * 119.99668 * 2 1 3 30 30 H 1.08994 * 109.47028 * 59.99942 * 3 2 1 31 31 H 1.09001 * 109.46914 * 300.00002 * 3 2 1 32 32 H 1.09004 * 109.47023 * 59.99634 * 4 3 2 33 33 H 1.09006 * 109.46919 * 300.00071 * 4 3 2 34 34 H 0.97002 * 119.99498 * 185.12274 * 9 8 6 35 35 H 1.08994 * 109.46818 * 90.00112 * 18 17 16 36 36 H 1.09007 * 109.46766 * 330.00215 * 18 17 16 37 37 H 1.08996 * 109.47052 * 210.00369 * 18 17 16 38 38 H 1.08001 * 119.80786 * 179.72293 * 19 17 16 39 39 H 0.96698 * 114.00557 * 270.24158 * 21 20 19 40 40 H 1.07994 * 120.04868 * 179.75636 * 22 20 19 41 41 H 0.96701 * 114.00681 * 270.02706 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4427 -0.0006 5 7 4.0582 2.8239 -0.0013 6 6 4.2859 3.4691 -1.1874 7 1 4.0429 4.5165 -1.2877 8 6 4.8296 2.7757 -2.2624 9 7 5.4625 1.6420 -2.0606 10 14 4.6608 3.4557 -3.9941 11 1 5.8188 4.3352 -4.2956 12 1 4.6258 2.3330 -4.9655 13 1 3.4038 4.2394 -4.0977 14 6 4.2833 3.4596 1.1656 15 8 4.1746 2.8576 2.2171 16 6 4.6605 4.8824 1.1678 17 6 6.0061 5.2526 1.0701 18 6 7.0721 4.1929 0.9617 19 6 6.3551 6.5727 1.0783 20 6 5.3773 7.5586 1.1722 21 8 5.7355 8.8676 1.1734 22 6 4.0384 7.2089 1.2699 23 6 3.6716 5.8737 1.2683 24 8 2.3640 5.5255 1.3641 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6765 1.9564 0.8899 31 1 1.6765 1.9564 -0.8900 32 1 3.9329 0.9289 -0.8909 33 1 3.9336 0.9287 0.8892 34 1 5.9058 1.1959 -2.7991 35 1 7.2483 3.9610 -0.0886 36 1 6.7443 3.2932 1.4826 37 1 7.9946 4.5582 1.4129 38 1 7.3955 6.8533 1.0071 39 1 5.9086 9.2273 2.0541 40 1 3.2831 7.9770 1.3465 41 1 2.0545 5.4047 2.2722 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193932137.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:02 Heat of formation + Delta-G solvation = -106.193979 kcal Electronic energy + Delta-G solvation = -24544.542095 eV Core-core repulsion = 21003.636644 eV Total energy + Delta-G solvation = -3540.905450 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.02532 -38.34810 -37.32592 -35.83580 -35.19052 -33.89538 -31.50928 -31.41609 -29.54249 -28.04738 -26.64609 -24.90515 -23.53969 -22.05587 -21.33310 -20.39766 -19.27641 -18.24169 -17.59213 -16.77804 -16.16746 -15.98802 -15.11171 -14.82081 -14.69420 -14.54428 -14.02691 -13.66114 -13.50106 -12.93702 -12.85011 -12.74400 -12.39616 -12.21286 -12.13549 -11.90379 -11.50130 -11.32342 -11.15974 -11.08074 -10.90236 -10.59163 -10.48005 -10.44205 -10.31518 -10.28669 -10.20828 -9.71406 -9.12938 -8.60372 -8.28703 -7.97171 -7.46821 -6.37531 -4.06026 1.45918 1.64085 3.11182 3.21498 3.27459 3.73850 3.79054 4.11138 4.29107 4.68830 4.76616 4.96517 5.22755 5.42142 5.49419 5.50729 5.67686 5.75078 5.79837 5.92718 6.10171 6.17061 6.23054 6.25912 6.34991 6.39047 6.43262 6.54212 6.60797 6.68584 6.71772 6.76834 6.85569 6.96283 7.05057 7.15888 7.38044 7.54075 7.77951 7.94153 8.03376 8.39763 9.05481 9.46326 9.90079 10.64030 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.013132 B = 0.006566 C = 0.005380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.754597 B = 4263.442978 C = 5202.965157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.126 4.126 4 C 0.110 3.890 5 N -0.417 5.417 6 C -0.331 4.331 7 H 0.086 0.914 8 C 0.048 3.952 9 N -0.861 5.861 10 Si 0.910 3.090 11 H -0.276 1.276 12 H -0.281 1.281 13 H -0.268 1.268 14 C 0.517 3.483 15 O -0.605 6.605 16 C -0.098 4.098 17 C -0.013 4.013 18 C -0.112 4.112 19 C -0.160 4.160 20 C 0.115 3.885 21 O -0.498 6.498 22 C -0.184 4.184 23 C 0.145 3.855 24 O -0.487 6.487 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.046 0.954 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.109 0.891 33 H 0.054 0.946 34 H 0.270 0.730 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.128 0.872 39 H 0.385 0.615 40 H 0.130 0.870 41 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.456 5.544 4.851 7.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.164 4.164 4 C -0.013 4.013 5 N -0.133 5.133 6 C -0.459 4.459 7 H 0.104 0.896 8 C -0.158 4.158 9 N -0.498 5.498 10 Si 0.736 3.264 11 H -0.202 1.202 12 H -0.207 1.207 13 H -0.192 1.192 14 C 0.305 3.695 15 O -0.493 6.493 16 C -0.102 4.102 17 C -0.014 4.014 18 C -0.169 4.169 19 C -0.178 4.178 20 C 0.071 3.929 21 O -0.308 6.308 22 C -0.203 4.203 23 C 0.099 3.901 24 O -0.297 6.297 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.126 0.874 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.105 0.895 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.146 0.854 39 H 0.240 0.760 40 H 0.148 0.852 41 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -1.527 4.999 3.963 6.560 hybrid contribution -0.076 0.524 -0.100 0.539 sum -1.603 5.524 3.863 6.928 Atomic orbital electron populations 1.21754 0.96639 1.00625 1.01500 1.21432 0.94979 0.97747 1.01571 1.21880 0.97703 0.95375 1.01457 1.21512 0.91300 0.84759 1.03768 1.43310 1.53897 1.11832 1.04229 1.19344 1.42346 0.96120 0.88064 0.89604 1.25327 0.94553 0.95888 1.00024 1.69813 1.30007 1.17233 1.32728 0.86192 0.79293 0.78658 0.82272 1.20169 1.20658 1.19243 1.17897 0.80873 0.86042 0.84647 1.90647 1.58755 1.67801 1.32087 1.20330 0.92924 0.95125 1.01801 1.19380 0.93343 0.94097 0.94578 1.20796 0.95235 0.96960 1.03882 1.20872 0.99507 0.91931 1.05517 1.18206 0.91087 0.83059 1.00573 1.84781 1.90203 1.22258 1.33542 1.21424 0.96067 0.95758 1.07030 1.18160 0.83092 0.90156 0.98671 1.84769 1.21824 1.90968 1.32105 0.93109 0.93018 0.93454 0.92227 0.92460 0.93085 0.92162 0.87371 0.92703 0.91946 0.89487 0.90956 0.92228 0.85423 0.75990 0.85162 0.75656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.91 37.16 0.37 -1.75 16 2 C -0.12 -2.02 5.93 -26.73 -0.16 -2.18 16 3 C -0.13 -2.59 5.54 -26.73 -0.15 -2.74 16 4 C 0.11 2.62 5.04 -4.04 -0.02 2.60 16 5 N -0.42 -10.53 2.51 -116.11 -0.29 -10.82 16 6 C -0.33 -8.51 8.67 -14.99 -0.13 -8.64 16 7 H 0.09 2.29 7.32 -52.49 -0.38 1.90 16 8 C 0.05 1.20 5.01 -17.46 -0.09 1.12 16 9 N -0.86 -22.14 11.34 55.50 0.63 -21.52 16 10 Si 0.91 19.91 29.60 -169.99 -5.03 14.87 16 11 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 12 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 13 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 14 C 0.52 12.79 5.04 -12.62 -0.06 12.72 16 15 O -0.61 -16.14 16.66 5.23 0.09 -16.05 16 16 C -0.10 -2.14 4.05 -104.83 -0.42 -2.57 16 17 C -0.01 -0.26 5.88 -104.61 -0.61 -0.87 16 18 C -0.11 -2.13 9.61 36.01 0.35 -1.79 16 19 C -0.16 -2.67 9.54 -39.84 -0.38 -3.06 16 20 C 0.12 1.84 6.71 -39.05 -0.26 1.58 16 21 O -0.50 -6.60 13.48 -18.83 -0.25 -6.86 16 22 C -0.18 -3.07 9.92 -39.32 -0.39 -3.46 16 23 C 0.14 2.82 6.72 -38.69 -0.26 2.56 16 24 O -0.49 -9.02 12.95 -18.68 -0.24 -9.26 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.11 2.72 5.46 -51.93 -0.28 2.44 16 33 H 0.05 1.35 7.36 -51.93 -0.38 0.97 16 34 H 0.27 6.59 8.32 -40.82 -0.34 6.25 16 35 H 0.09 1.78 8.14 -51.93 -0.42 1.35 16 36 H 0.07 1.54 7.08 -51.93 -0.37 1.17 16 37 H 0.06 0.91 8.08 -51.93 -0.42 0.49 16 38 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 39 H 0.38 2.97 9.06 45.56 0.41 3.39 16 40 H 0.13 1.89 8.06 -52.49 -0.42 1.46 16 41 H 0.39 5.38 9.06 45.56 0.41 5.79 16 LS Contribution 348.44 15.07 5.25 5.25 Total: -1.00 -31.21 348.44 -6.45 -37.66 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -4.37 Total: 13.19 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -2.23 Total: -6.47 kcal Atomic # 7 Polarization: -32.67 SS G_CDS: 0.34 Total: -32.33 kcal Atomic # 8 Polarization: -31.75 SS G_CDS: -0.41 Total: -32.16 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.03 Total: 14.87 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.21 -6.45 -37.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193932137.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.536 kcal (2) G-P(sol) polarization free energy of solvation -31.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds