Wall clock time and date at job start Tue Mar 31 2020 07:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46659 * 2 1 4 4 C 1.53002 * 109.46999 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47225 * 179.97438 * 4 3 2 6 6 C 1.36934 * 120.00097 * 270.00025 * 5 4 3 7 7 H 1.07993 * 120.00206 * 141.81722 * 6 5 4 8 8 C 1.39001 * 119.99595 * 321.82173 * 6 5 4 9 9 N 1.31396 * 120.00126 * 341.07362 * 8 6 5 10 10 Si 1.86804 * 119.99804 * 161.07964 * 8 6 5 11 11 H 1.48505 * 109.47024 * 89.99806 * 10 8 6 12 12 H 1.48502 * 109.46947 * 209.99589 * 10 8 6 13 13 H 1.48494 * 109.47025 * 329.99795 * 10 8 6 14 14 C 1.34773 * 120.00281 * 90.00034 * 5 4 3 15 15 O 1.21654 * 119.99893 * 5.33166 * 14 5 4 16 16 C 1.47198 * 120.00439 * 185.33883 * 14 5 4 17 17 C 1.39898 * 120.13910 * 271.99683 * 16 14 5 18 18 C 1.50701 * 119.95960 * 0.02562 * 17 16 14 19 19 C 1.36546 * 120.08007 * 180.29190 * 17 16 14 20 20 C 1.39178 * 120.37852 * 359.45578 * 19 17 16 21 21 O 1.35709 * 119.86002 * 180.29538 * 20 19 17 22 22 C 1.38725 * 120.28111 * 0.54618 * 20 19 17 23 23 C 1.38468 * 119.90896 * 359.72635 * 22 20 19 24 24 O 1.35659 * 120.18228 * 179.97438 * 23 22 20 25 25 H 1.09003 * 109.47286 * 299.99686 * 1 2 3 26 26 H 1.09001 * 109.47459 * 60.00331 * 1 2 3 27 27 H 1.09007 * 109.46898 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47286 * 240.00314 * 2 1 3 29 29 H 1.09001 * 109.47459 * 119.99668 * 2 1 3 30 30 H 1.08994 * 109.47028 * 59.99942 * 3 2 1 31 31 H 1.09001 * 109.46914 * 300.00002 * 3 2 1 32 32 H 1.09004 * 109.47023 * 59.99634 * 4 3 2 33 33 H 1.09006 * 109.46919 * 300.00071 * 4 3 2 34 34 H 0.97002 * 119.99498 * 185.12274 * 9 8 6 35 35 H 1.08994 * 109.46818 * 90.00112 * 18 17 16 36 36 H 1.09007 * 109.46766 * 330.00215 * 18 17 16 37 37 H 1.08996 * 109.47052 * 210.00369 * 18 17 16 38 38 H 1.08001 * 119.80786 * 179.72293 * 19 17 16 39 39 H 0.96698 * 114.00557 * 270.24158 * 21 20 19 40 40 H 1.07994 * 120.04868 * 179.75636 * 22 20 19 41 41 H 0.96701 * 114.00681 * 270.02706 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4427 -0.0006 5 7 4.0582 2.8239 -0.0013 6 6 4.2859 3.4691 -1.1874 7 1 4.0429 4.5165 -1.2877 8 6 4.8296 2.7757 -2.2624 9 7 5.4625 1.6420 -2.0606 10 14 4.6608 3.4557 -3.9941 11 1 5.8188 4.3352 -4.2956 12 1 4.6258 2.3330 -4.9655 13 1 3.4038 4.2394 -4.0977 14 6 4.2833 3.4596 1.1656 15 8 4.1746 2.8576 2.2171 16 6 4.6605 4.8824 1.1678 17 6 6.0061 5.2526 1.0701 18 6 7.0721 4.1929 0.9617 19 6 6.3551 6.5727 1.0783 20 6 5.3773 7.5586 1.1722 21 8 5.7355 8.8676 1.1734 22 6 4.0384 7.2089 1.2699 23 6 3.6716 5.8737 1.2683 24 8 2.3640 5.5255 1.3641 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6765 1.9564 0.8899 31 1 1.6765 1.9564 -0.8900 32 1 3.9329 0.9289 -0.8909 33 1 3.9336 0.9287 0.8892 34 1 5.9058 1.1959 -2.7991 35 1 7.2483 3.9610 -0.0886 36 1 6.7443 3.2932 1.4826 37 1 7.9946 4.5582 1.4129 38 1 7.3955 6.8533 1.0071 39 1 5.9086 9.2273 2.0541 40 1 3.2831 7.9770 1.3465 41 1 2.0545 5.4047 2.2722 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193932137.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:01 Heat of formation + Delta-G solvation = -128.228056 kcal Electronic energy + Delta-G solvation = -24545.497564 eV Core-core repulsion = 21003.636644 eV Total energy + Delta-G solvation = -3541.860919 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.53543 -39.97700 -38.69933 -37.30620 -36.92342 -35.53767 -33.42423 -32.82449 -31.04813 -29.58967 -28.10578 -26.83893 -25.07616 -23.53734 -22.74387 -21.95462 -21.11817 -19.54527 -19.32932 -18.05708 -17.89563 -17.59768 -16.61696 -16.53898 -16.35265 -16.10403 -15.53200 -15.32207 -14.99680 -14.43920 -14.31981 -14.26485 -13.88150 -13.79610 -13.63193 -13.48506 -13.15159 -12.94025 -12.90937 -12.77850 -12.38031 -12.19752 -12.07188 -11.97999 -11.84075 -11.77346 -11.59122 -11.44494 -11.03986 -10.50051 -9.66954 -9.49143 -9.35671 -8.31117 -6.06288 0.07124 0.26619 1.35819 1.43135 1.53735 1.91831 2.27581 2.42810 2.93295 3.02466 3.09320 3.43131 3.86597 4.01593 4.08774 4.14139 4.26334 4.32566 4.36841 4.48006 4.54318 4.75596 4.78432 4.82745 4.86529 4.86757 4.98262 5.04891 5.16119 5.17522 5.24711 5.31479 5.34762 5.42356 5.45336 5.54832 5.57842 5.72355 6.01107 6.42210 6.71368 6.88769 7.08963 7.52998 7.97373 8.71087 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.013132 B = 0.006566 C = 0.005380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.754597 B = 4263.442978 C = 5202.965157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 C -0.112 4.112 4 C 0.111 3.889 5 N -0.428 5.428 6 C -0.340 4.340 7 H 0.075 0.925 8 C 0.015 3.985 9 N -0.885 5.885 10 Si 0.970 3.030 11 H -0.270 1.270 12 H -0.274 1.274 13 H -0.269 1.269 14 C 0.514 3.486 15 O -0.639 6.639 16 C -0.142 4.142 17 C -0.029 4.029 18 C -0.103 4.103 19 C -0.156 4.156 20 C 0.138 3.862 21 O -0.496 6.496 22 C -0.181 4.181 23 C 0.137 3.863 24 O -0.502 6.502 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.038 0.962 31 H 0.050 0.950 32 H 0.095 0.905 33 H 0.035 0.965 34 H 0.274 0.726 35 H 0.065 0.935 36 H 0.036 0.964 37 H 0.099 0.901 38 H 0.158 0.842 39 H 0.415 0.585 40 H 0.156 0.844 41 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.526 7.626 4.269 8.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.153 4.153 3 C -0.151 4.151 4 C -0.013 4.013 5 N -0.143 5.143 6 C -0.468 4.468 7 H 0.092 0.908 8 C -0.189 4.189 9 N -0.522 5.522 10 Si 0.793 3.207 11 H -0.196 1.196 12 H -0.199 1.199 13 H -0.194 1.194 14 C 0.304 3.696 15 O -0.528 6.528 16 C -0.145 4.145 17 C -0.030 4.030 18 C -0.159 4.159 19 C -0.174 4.174 20 C 0.093 3.907 21 O -0.310 6.310 22 C -0.199 4.199 23 C 0.092 3.908 24 O -0.314 6.314 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.113 0.887 33 H 0.053 0.947 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.055 0.945 37 H 0.117 0.883 38 H 0.175 0.825 39 H 0.275 0.725 40 H 0.174 0.826 41 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -1.597 7.095 3.410 8.032 hybrid contribution -0.006 -0.030 0.160 0.163 sum -1.603 7.065 3.570 8.076 Atomic orbital electron populations 1.21708 0.94093 1.02384 1.01747 1.21410 0.97159 0.94919 1.01800 1.21744 0.95266 0.97837 1.00222 1.21487 0.93401 0.84422 1.01963 1.43512 1.54127 1.12107 1.04553 1.19304 1.43085 0.95852 0.88578 0.90754 1.26004 0.93858 0.96103 1.02936 1.69897 1.30370 1.18108 1.33805 0.85288 0.79099 0.78201 0.78082 1.19553 1.19890 1.19383 1.18414 0.79797 0.87507 0.83889 1.90587 1.60089 1.69139 1.33030 1.20300 0.94749 0.93623 1.05856 1.19496 0.92413 0.95541 0.95520 1.20684 0.97035 0.95897 1.02291 1.21106 1.01310 0.90612 1.04375 1.18188 0.90515 0.84090 0.97892 1.84717 1.89912 1.20343 1.36045 1.21628 0.97266 0.94864 1.06184 1.18323 0.82792 0.90890 0.98827 1.84707 1.21695 1.91137 1.33850 0.92881 0.92788 0.90932 0.92016 0.92238 0.94299 0.93133 0.88694 0.94656 0.91578 0.91590 0.94461 0.88273 0.82451 0.72525 0.82602 0.73746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.87 9.91 71.98 0.71 -3.16 16 2 C -0.11 -3.90 5.93 30.60 0.18 -3.72 16 3 C -0.11 -4.79 5.54 30.60 0.17 -4.62 16 4 C 0.11 5.55 5.04 86.38 0.44 5.99 16 5 N -0.43 -22.61 2.51 -639.49 -1.61 -24.22 16 6 C -0.34 -18.04 8.67 84.08 0.73 -17.31 16 7 H 0.07 4.07 7.32 -2.91 -0.02 4.05 16 8 C 0.01 0.75 5.01 84.94 0.43 1.18 16 9 N -0.88 -46.60 11.34 21.67 0.25 -46.35 16 10 Si 0.97 40.80 29.60 68.60 2.03 42.83 16 11 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 12 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 13 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 14 C 0.51 26.68 5.04 86.60 0.44 27.11 16 15 O -0.64 -35.99 16.66 -4.20 -0.07 -36.06 16 16 C -0.14 -6.31 4.05 -20.00 -0.08 -6.40 16 17 C -0.03 -1.12 5.88 -19.86 -0.12 -1.24 16 18 C -0.10 -3.97 9.61 71.24 0.68 -3.29 16 19 C -0.16 -4.82 9.54 22.10 0.21 -4.61 16 20 C 0.14 3.95 6.71 22.61 0.15 4.10 16 21 O -0.50 -10.81 13.48 -90.30 -1.22 -12.02 16 22 C -0.18 -5.60 9.92 22.44 0.22 -5.38 16 23 C 0.14 5.30 6.72 22.85 0.15 5.45 16 24 O -0.50 -18.70 12.95 -89.75 -1.16 -19.86 16 25 H 0.05 1.41 8.14 -2.39 -0.02 1.40 16 26 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 28 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.10 5.00 5.46 -2.39 -0.01 4.99 16 33 H 0.03 1.86 7.36 -2.38 -0.02 1.84 16 34 H 0.27 13.55 8.32 -92.71 -0.77 12.78 16 35 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 36 H 0.04 1.66 7.08 -2.38 -0.02 1.65 16 37 H 0.10 2.92 8.08 -2.39 -0.02 2.90 16 38 H 0.16 3.86 8.06 -2.91 -0.02 3.84 16 39 H 0.41 4.24 9.06 -74.06 -0.67 3.57 16 40 H 0.16 3.98 8.06 -2.91 -0.02 3.95 16 41 H 0.40 11.37 9.06 -74.06 -0.67 10.70 16 Total: -1.00 -69.91 348.44 2.25 -67.65 By element: Atomic # 1 Polarization: 34.21 SS G_CDS: -0.28 Total: 33.93 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: 4.32 Total: -5.89 kcal Atomic # 7 Polarization: -69.21 SS G_CDS: -1.36 Total: -70.57 kcal Atomic # 8 Polarization: -65.50 SS G_CDS: -2.45 Total: -67.95 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Total: -69.91 2.25 -67.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193932137.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.575 kcal (2) G-P(sol) polarization free energy of solvation -69.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds