Wall clock time and date at job start Tue Mar 31 2020 07:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52991 * 109.46879 * 2 1 4 4 C 1.53010 * 109.46752 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.46954 * 179.97438 * 4 3 2 6 6 C 1.37176 * 120.00290 * 270.00074 * 5 4 3 7 7 H 1.08002 * 120.00030 * 138.45223 * 6 5 4 8 8 C 1.38887 * 120.00091 * 318.45272 * 6 5 4 9 9 N 1.31461 * 119.99593 * 342.23714 * 8 6 5 10 10 Si 1.86794 * 120.00251 * 162.23868 * 8 6 5 11 11 H 1.48496 * 109.47406 * 89.99729 * 10 8 6 12 12 H 1.48497 * 109.47174 * 210.00227 * 10 8 6 13 13 H 1.48504 * 109.47159 * 330.00158 * 10 8 6 14 14 C 1.34780 * 119.99934 * 90.00217 * 5 4 3 15 15 O 1.21516 * 119.99827 * 3.00504 * 14 5 4 16 16 O 1.34683 * 120.00137 * 183.00499 * 14 5 4 17 17 C 1.35994 * 116.99708 * 175.10484 * 16 14 5 18 18 C 1.38708 * 119.99496 * 256.19526 * 17 16 14 19 19 C 1.38117 * 119.99803 * 179.76857 * 18 17 16 20 20 C 1.38723 * 119.99801 * 0.51225 * 19 18 17 21 21 O 1.35959 * 119.99700 * 179.71974 * 20 19 18 22 22 C 1.42895 * 117.00748 * 0.02728 * 21 20 19 23 23 C 1.38713 * 119.99767 * 359.74690 * 20 19 18 24 24 C 1.38111 * 120.00185 * 359.97438 * 23 20 19 25 25 H 1.08997 * 109.47458 * 59.99551 * 1 2 3 26 26 H 1.09004 * 109.47266 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47341 * 299.99870 * 1 2 3 28 28 H 1.09005 * 109.46465 * 239.99894 * 2 1 3 29 29 H 1.08995 * 109.47000 * 120.00214 * 2 1 3 30 30 H 1.09005 * 109.47659 * 60.00626 * 3 2 1 31 31 H 1.09000 * 109.47918 * 299.99875 * 3 2 1 32 32 H 1.09004 * 109.46794 * 60.00399 * 4 3 2 33 33 H 1.08995 * 109.46980 * 300.00124 * 4 3 2 34 34 H 0.97006 * 119.99682 * 179.97438 * 9 8 6 35 35 H 1.07995 * 120.00318 * 0.02562 * 18 17 16 36 36 H 1.07995 * 120.00254 * 180.26150 * 19 18 17 37 37 H 1.09003 * 109.47132 * 299.99823 * 22 21 20 38 38 H 1.09001 * 109.47102 * 59.99233 * 22 21 20 39 39 H 1.09000 * 109.47697 * 179.97438 * 22 21 20 40 40 H 1.07996 * 119.99944 * 179.97438 * 23 20 19 41 41 H 1.07997 * 120.00364 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0583 2.8236 -0.0013 6 6 4.2865 3.4700 -1.1895 7 1 3.9936 4.5028 -1.3073 8 6 4.8940 2.7962 -2.2411 9 7 5.5588 1.6852 -2.0132 10 14 4.7666 3.4686 -3.9791 11 1 5.9032 4.3883 -4.2387 12 1 4.8078 2.3448 -4.9489 13 1 3.4874 4.2073 -4.1316 14 6 4.2835 3.4593 1.1657 15 8 4.1339 2.8695 2.2175 16 8 4.6743 4.7481 1.1660 17 6 4.7852 5.3593 2.3758 18 6 3.8086 6.2512 2.7942 19 6 3.9187 6.8683 4.0249 20 6 5.0113 6.6043 4.8379 21 8 5.1225 7.2162 6.0470 22 6 4.0776 8.1183 6.4162 23 6 5.9905 5.7165 4.4171 24 6 5.8774 5.0950 3.1889 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8932 -0.5139 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.6767 1.9564 -0.8900 32 1 3.9329 0.9287 -0.8909 33 1 3.9337 0.9284 0.8891 34 1 5.9828 1.2143 -2.7477 35 1 2.9602 6.4599 2.1595 36 1 3.1563 7.5595 4.3525 37 1 4.0178 8.9241 5.6847 38 1 3.1286 7.5828 6.4451 39 1 4.2889 8.5358 7.4007 40 1 6.8412 5.5113 5.0499 41 1 6.6400 4.4041 2.8611 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194520172.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:05 Heat of formation + Delta-G solvation = -86.617243 kcal Electronic energy + Delta-G solvation = -23487.335276 eV Core-core repulsion = 19947.278736 eV Total energy + Delta-G solvation = -3540.056539 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.39242 -39.43855 -37.51327 -36.02019 -34.83100 -33.96959 -31.55146 -30.97328 -29.33935 -28.35649 -27.11067 -24.96483 -23.56697 -22.56848 -21.82674 -20.55254 -19.78046 -18.43665 -18.05874 -16.63291 -16.43605 -15.96333 -15.71070 -15.01649 -14.74418 -14.51330 -14.47809 -13.99838 -13.68666 -13.36119 -13.25329 -13.00868 -12.65990 -12.31379 -12.16715 -12.06593 -11.85458 -11.53516 -11.31230 -11.12312 -10.98749 -10.77890 -10.63701 -10.52780 -10.36138 -10.27935 -9.93201 -9.75666 -9.53686 -8.93216 -8.81880 -7.82761 -7.54487 -6.37368 -4.13584 1.49532 1.52799 3.14025 3.21390 3.24461 3.28458 3.44869 3.96006 4.06783 4.28328 4.87447 4.96655 4.98086 5.06006 5.11773 5.27126 5.34884 5.45855 5.48338 5.58364 5.62646 5.67288 5.89569 6.03324 6.17194 6.21926 6.24338 6.34242 6.38899 6.42803 6.51660 6.64602 6.74804 6.77333 6.82744 7.04481 7.30490 7.38747 7.50308 7.67274 7.94989 8.36543 9.06721 9.37650 9.94251 10.66508 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015181 B = 0.004279 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.955068 B = 6542.246665 C = 7682.113412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.131 4.131 4 C 0.135 3.865 5 N -0.421 5.421 6 C -0.334 4.334 7 H 0.091 0.909 8 C 0.045 3.955 9 N -0.865 5.865 10 Si 0.919 3.081 11 H -0.276 1.276 12 H -0.282 1.282 13 H -0.268 1.268 14 C 0.604 3.396 15 O -0.614 6.614 16 O -0.296 6.296 17 C 0.094 3.906 18 C -0.088 4.088 19 C -0.195 4.195 20 C 0.112 3.888 21 O -0.320 6.320 22 C 0.028 3.972 23 C -0.137 4.137 24 C -0.080 4.080 25 H 0.051 0.949 26 H 0.047 0.953 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.107 0.893 33 H 0.058 0.942 34 H 0.270 0.730 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.096 0.904 40 H 0.133 0.867 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.665 6.445 8.044 11.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.169 4.169 4 C 0.013 3.987 5 N -0.146 5.146 6 C -0.462 4.462 7 H 0.108 0.892 8 C -0.161 4.161 9 N -0.502 5.502 10 Si 0.745 3.255 11 H -0.202 1.202 12 H -0.207 1.207 13 H -0.193 1.193 14 C 0.360 3.640 15 O -0.508 6.508 16 O -0.208 6.208 17 C 0.050 3.950 18 C -0.107 4.107 19 C -0.214 4.214 20 C 0.067 3.933 21 O -0.233 6.233 22 C -0.067 4.067 23 C -0.156 4.156 24 C -0.098 4.098 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.125 0.875 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.148 0.852 36 H 0.148 0.852 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.115 0.885 40 H 0.151 0.849 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.428 6.113 8.379 11.277 hybrid contribution -0.211 0.409 -0.966 1.070 sum -4.639 6.523 7.413 10.910 Atomic orbital electron populations 1.21755 0.96538 1.00746 1.01522 1.21421 0.95082 0.97485 1.01753 1.21961 0.97599 0.95761 1.01628 1.21421 0.91207 0.82258 1.03803 1.42362 1.58170 1.12166 1.01883 1.19440 1.39801 0.98327 0.88604 0.89183 1.25430 0.93693 0.96440 1.00547 1.69944 1.29795 1.17746 1.32702 0.86068 0.79055 0.78576 0.81805 1.20175 1.20721 1.19286 1.18846 0.79572 0.79843 0.85705 1.90841 1.61830 1.66531 1.31579 1.84406 1.81333 1.26785 1.28295 1.18307 0.94623 0.95792 0.86243 1.20983 0.97552 0.97040 0.95137 1.20972 0.99402 1.05341 0.95705 1.18957 0.95017 0.94311 0.85027 1.86050 1.46942 1.57310 1.33042 1.23012 0.90428 0.92206 1.01082 1.20206 0.99621 0.98847 0.96915 1.21229 0.97886 0.98071 0.92649 0.92963 0.93350 0.93098 0.92061 0.92317 0.92982 0.91854 0.87523 0.92366 0.92034 0.85164 0.85246 0.92747 0.92727 0.88527 0.84947 0.84759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.91 37.16 0.37 -1.67 16 2 C -0.12 -1.95 5.93 -26.74 -0.16 -2.11 16 3 C -0.13 -2.61 5.54 -26.73 -0.15 -2.76 16 4 C 0.14 3.20 5.02 -4.04 -0.02 3.18 16 5 N -0.42 -10.96 2.49 -120.22 -0.30 -11.26 16 6 C -0.33 -8.80 8.86 -14.92 -0.13 -8.93 16 7 H 0.09 2.35 7.78 -52.49 -0.41 1.94 16 8 C 0.04 1.14 5.01 -17.47 -0.09 1.05 16 9 N -0.87 -22.98 11.53 55.49 0.64 -22.34 16 10 Si 0.92 19.70 29.59 -169.99 -5.03 14.67 16 11 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 12 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 13 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 14 C 0.60 15.77 8.22 54.06 0.44 16.21 16 15 O -0.61 -16.67 15.42 -19.28 -0.30 -16.97 16 16 O -0.30 -7.15 9.20 -24.93 -0.23 -7.38 16 17 C 0.09 1.93 5.16 -39.23 -0.20 1.73 16 18 C -0.09 -1.54 9.98 -39.45 -0.39 -1.93 16 19 C -0.20 -2.87 9.03 -39.45 -0.36 -3.23 16 20 C 0.11 1.69 6.69 -39.23 -0.26 1.43 16 21 O -0.32 -4.24 10.50 -19.61 -0.21 -4.45 16 22 C 0.03 0.25 9.81 101.05 0.99 1.24 16 23 C -0.14 -2.21 9.98 -39.45 -0.39 -2.60 16 24 C -0.08 -1.50 9.53 -39.45 -0.38 -1.87 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.11 2.65 5.68 -51.93 -0.30 2.35 16 33 H 0.06 1.42 7.38 -51.93 -0.38 1.03 16 34 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 35 H 0.13 2.07 8.06 -52.49 -0.42 1.65 16 36 H 0.13 1.47 6.29 -52.49 -0.33 1.14 16 37 H 0.05 0.42 7.66 -51.93 -0.40 0.03 16 38 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 39 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.13 1.82 8.06 -52.49 -0.42 1.39 16 41 H 0.13 2.52 8.06 -52.49 -0.42 2.09 16 LS Contribution 348.80 15.07 5.26 5.26 Total: -1.00 -30.63 348.80 -6.89 -37.52 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -6.00 Total: 5.21 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -0.73 Total: -0.26 kcal Atomic # 7 Polarization: -33.95 SS G_CDS: 0.34 Total: -33.61 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -0.73 Total: -28.79 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.03 Total: 14.67 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.63 -6.89 -37.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194520172.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.101 kcal (2) G-P(sol) polarization free energy of solvation -30.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds