Wall clock time and date at job start Tue Mar 31 2020 07:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52991 * 109.46879 * 2 1 4 4 C 1.53010 * 109.46752 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.46954 * 179.97438 * 4 3 2 6 6 C 1.37176 * 120.00290 * 270.00074 * 5 4 3 7 7 H 1.08002 * 120.00030 * 138.45223 * 6 5 4 8 8 C 1.38887 * 120.00091 * 318.45272 * 6 5 4 9 9 N 1.31461 * 119.99593 * 342.23714 * 8 6 5 10 10 Si 1.86794 * 120.00251 * 162.23868 * 8 6 5 11 11 H 1.48496 * 109.47406 * 89.99729 * 10 8 6 12 12 H 1.48497 * 109.47174 * 210.00227 * 10 8 6 13 13 H 1.48504 * 109.47159 * 330.00158 * 10 8 6 14 14 C 1.34780 * 119.99934 * 90.00217 * 5 4 3 15 15 O 1.21516 * 119.99827 * 3.00504 * 14 5 4 16 16 O 1.34683 * 120.00137 * 183.00499 * 14 5 4 17 17 C 1.35994 * 116.99708 * 175.10484 * 16 14 5 18 18 C 1.38708 * 119.99496 * 256.19526 * 17 16 14 19 19 C 1.38117 * 119.99803 * 179.76857 * 18 17 16 20 20 C 1.38723 * 119.99801 * 0.51225 * 19 18 17 21 21 O 1.35959 * 119.99700 * 179.71974 * 20 19 18 22 22 C 1.42895 * 117.00748 * 0.02728 * 21 20 19 23 23 C 1.38713 * 119.99767 * 359.74690 * 20 19 18 24 24 C 1.38111 * 120.00185 * 359.97438 * 23 20 19 25 25 H 1.08997 * 109.47458 * 59.99551 * 1 2 3 26 26 H 1.09004 * 109.47266 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47341 * 299.99870 * 1 2 3 28 28 H 1.09005 * 109.46465 * 239.99894 * 2 1 3 29 29 H 1.08995 * 109.47000 * 120.00214 * 2 1 3 30 30 H 1.09005 * 109.47659 * 60.00626 * 3 2 1 31 31 H 1.09000 * 109.47918 * 299.99875 * 3 2 1 32 32 H 1.09004 * 109.46794 * 60.00399 * 4 3 2 33 33 H 1.08995 * 109.46980 * 300.00124 * 4 3 2 34 34 H 0.97006 * 119.99682 * 179.97438 * 9 8 6 35 35 H 1.07995 * 120.00318 * 0.02562 * 18 17 16 36 36 H 1.07995 * 120.00254 * 180.26150 * 19 18 17 37 37 H 1.09003 * 109.47132 * 299.99823 * 22 21 20 38 38 H 1.09001 * 109.47102 * 59.99233 * 22 21 20 39 39 H 1.09000 * 109.47697 * 179.97438 * 22 21 20 40 40 H 1.07996 * 119.99944 * 179.97438 * 23 20 19 41 41 H 1.07997 * 120.00364 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0583 2.8236 -0.0013 6 6 4.2865 3.4700 -1.1895 7 1 3.9936 4.5028 -1.3073 8 6 4.8940 2.7962 -2.2411 9 7 5.5588 1.6852 -2.0132 10 14 4.7666 3.4686 -3.9791 11 1 5.9032 4.3883 -4.2387 12 1 4.8078 2.3448 -4.9489 13 1 3.4874 4.2073 -4.1316 14 6 4.2835 3.4593 1.1657 15 8 4.1339 2.8695 2.2175 16 8 4.6743 4.7481 1.1660 17 6 4.7852 5.3593 2.3758 18 6 3.8086 6.2512 2.7942 19 6 3.9187 6.8683 4.0249 20 6 5.0113 6.6043 4.8379 21 8 5.1225 7.2162 6.0470 22 6 4.0776 8.1183 6.4162 23 6 5.9905 5.7165 4.4171 24 6 5.8774 5.0950 3.1889 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8932 -0.5139 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.6767 1.9564 -0.8900 32 1 3.9329 0.9287 -0.8909 33 1 3.9337 0.9284 0.8891 34 1 5.9828 1.2143 -2.7477 35 1 2.9602 6.4599 2.1595 36 1 3.1563 7.5595 4.3525 37 1 4.0178 8.9241 5.6847 38 1 3.1286 7.5828 6.4451 39 1 4.2889 8.5358 7.4007 40 1 6.8412 5.5113 5.0499 41 1 6.6400 4.4041 2.8611 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194520172.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:05 Heat of formation + Delta-G solvation = -103.272147 kcal Electronic energy + Delta-G solvation = -23488.057486 eV Core-core repulsion = 19947.278736 eV Total energy + Delta-G solvation = -3540.778750 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.00957 -40.81429 -39.12020 -37.52200 -36.69530 -35.56019 -33.51707 -32.26257 -30.68888 -29.83449 -28.06174 -26.93196 -25.14372 -23.86420 -23.26564 -22.02595 -21.57760 -20.29454 -19.21679 -18.38578 -18.02530 -17.72982 -16.75571 -16.63553 -16.22698 -16.10920 -16.02062 -15.54889 -15.09873 -14.90834 -14.63502 -14.37381 -13.93361 -13.80656 -13.66984 -13.32587 -13.17982 -13.10271 -12.97042 -12.79184 -12.39090 -12.16966 -12.06593 -11.98725 -11.93055 -11.85862 -11.51280 -11.45580 -11.42455 -10.88689 -10.13657 -9.56822 -9.12521 -8.34116 -6.18775 0.09147 0.21998 1.42782 1.46263 1.58489 1.77142 2.00532 2.30853 2.37731 2.72354 3.00871 3.64105 3.73490 3.81989 4.06736 4.11893 4.20621 4.28896 4.30570 4.43460 4.43839 4.48484 4.57210 4.74877 4.80170 4.83810 4.87409 4.90892 4.98779 5.06436 5.15171 5.16935 5.33241 5.38158 5.41230 5.42749 5.49291 5.52788 5.79973 6.06476 6.34108 6.39817 7.06394 7.38530 7.97275 8.70364 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015181 B = 0.004279 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.955068 B = 6542.246665 C = 7682.113412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 C -0.117 4.117 4 C 0.137 3.863 5 N -0.431 5.431 6 C -0.357 4.357 7 H 0.086 0.914 8 C 0.007 3.993 9 N -0.895 5.895 10 Si 0.989 3.011 11 H -0.274 1.274 12 H -0.273 1.273 13 H -0.260 1.260 14 C 0.594 3.406 15 O -0.636 6.636 16 O -0.307 6.307 17 C 0.041 3.959 18 C -0.091 4.091 19 C -0.184 4.184 20 C 0.124 3.876 21 O -0.326 6.326 22 C 0.014 3.986 23 C -0.140 4.140 24 C -0.095 4.095 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.051 0.949 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.039 0.961 31 H 0.059 0.941 32 H 0.095 0.905 33 H 0.040 0.960 34 H 0.275 0.725 35 H 0.140 0.860 36 H 0.170 0.830 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.124 0.876 40 H 0.154 0.846 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.040 7.851 8.523 13.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.153 4.153 3 C -0.156 4.156 4 C 0.015 3.985 5 N -0.157 5.157 6 C -0.484 4.484 7 H 0.103 0.897 8 C -0.196 4.196 9 N -0.531 5.531 10 Si 0.812 3.188 11 H -0.200 1.200 12 H -0.198 1.198 13 H -0.184 1.184 14 C 0.351 3.649 15 O -0.532 6.532 16 O -0.219 6.219 17 C -0.002 4.002 18 C -0.109 4.109 19 C -0.202 4.202 20 C 0.078 3.922 21 O -0.240 6.240 22 C -0.080 4.080 23 C -0.159 4.159 24 C -0.114 4.114 25 H 0.075 0.925 26 H 0.090 0.910 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.113 0.887 33 H 0.059 0.941 34 H 0.084 0.916 35 H 0.158 0.842 36 H 0.188 0.812 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.142 0.858 40 H 0.172 0.828 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.809 7.536 8.877 13.013 hybrid contribution 0.267 0.087 -0.904 0.947 sum -5.542 7.622 7.973 12.344 Atomic orbital electron populations 1.21713 0.94039 1.02435 1.01824 1.21408 0.97208 0.94675 1.02038 1.21834 0.94742 0.98288 1.00745 1.21446 0.93623 0.81285 1.02167 1.42666 1.58230 1.12790 1.01991 1.19632 1.40964 0.98621 0.89176 0.89656 1.26297 0.92615 0.96490 1.04182 1.70040 1.30142 1.18820 1.34129 0.85010 0.79221 0.78092 0.76497 1.19994 1.19775 1.18354 1.19100 0.79529 0.80775 0.85532 1.90781 1.62859 1.67352 1.32222 1.84404 1.81105 1.25696 1.30682 1.18806 0.97016 0.97907 0.86441 1.21166 0.97026 0.96399 0.96328 1.21330 0.99954 1.04834 0.94077 1.19051 0.94270 0.93196 0.85683 1.86067 1.48735 1.57658 1.31522 1.23436 0.89747 0.91890 1.02955 1.20390 1.00813 0.98738 0.95944 1.21199 0.97475 0.98809 0.93873 0.92504 0.90963 0.92996 0.91641 0.92217 0.94173 0.92205 0.88737 0.94095 0.91553 0.84217 0.81229 0.91238 0.91721 0.85795 0.82840 0.86250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.67 9.91 71.98 0.71 -2.96 16 2 C -0.12 -3.72 5.93 30.59 0.18 -3.53 16 3 C -0.12 -4.81 5.54 30.59 0.17 -4.64 16 4 C 0.14 6.76 5.02 86.38 0.43 7.20 16 5 N -0.43 -23.52 2.49 -764.63 -1.91 -25.42 16 6 C -0.36 -19.40 8.86 84.01 0.74 -18.65 16 7 H 0.09 4.61 7.78 -2.91 -0.02 4.59 16 8 C 0.01 0.38 5.01 84.90 0.43 0.81 16 9 N -0.89 -48.49 11.53 21.65 0.25 -48.24 16 10 Si 0.99 40.40 29.59 68.60 2.03 42.43 16 11 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 12 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 13 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 14 C 0.59 32.68 8.22 129.79 1.07 33.74 16 15 O -0.64 -36.36 15.42 19.79 0.31 -36.06 16 16 O -0.31 -15.64 9.20 -0.43 0.00 -15.65 16 17 C 0.04 1.75 5.16 22.50 0.12 1.87 16 18 C -0.09 -3.13 9.98 22.35 0.22 -2.91 16 19 C -0.18 -4.97 9.03 22.36 0.20 -4.77 16 20 C 0.12 3.50 6.69 22.50 0.15 3.65 16 21 O -0.33 -7.63 10.50 -93.09 -0.98 -8.60 16 22 C 0.01 0.19 9.81 113.37 1.11 1.30 16 23 C -0.14 -4.45 9.98 22.35 0.22 -4.23 16 24 C -0.09 -3.72 9.53 22.35 0.21 -3.50 16 25 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 27 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 29 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 31 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.09 4.88 5.68 -2.39 -0.01 4.87 16 33 H 0.04 2.11 7.38 -2.39 -0.02 2.09 16 34 H 0.27 13.85 8.31 -92.70 -0.77 13.08 16 35 H 0.14 4.42 8.06 -2.91 -0.02 4.40 16 36 H 0.17 3.15 6.29 -2.91 -0.02 3.13 16 37 H 0.07 0.77 7.66 -2.39 -0.02 0.75 16 38 H 0.06 0.79 7.66 -2.39 -0.02 0.77 16 39 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.15 4.08 8.06 -2.91 -0.02 4.05 16 41 H 0.12 4.85 8.06 -2.91 -0.02 4.83 16 Total: -1.00 -68.89 348.80 6.69 -62.20 By element: Atomic # 1 Polarization: 24.96 SS G_CDS: 1.02 Total: 25.98 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: 5.97 Total: 3.37 kcal Atomic # 7 Polarization: -72.01 SS G_CDS: -1.66 Total: -73.66 kcal Atomic # 8 Polarization: -59.64 SS G_CDS: -0.68 Total: -60.31 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.43 kcal Total: -68.89 6.69 -62.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194520172.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.074 kcal (2) G-P(sol) polarization free energy of solvation -68.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds