Wall clock time and date at job start Tue Mar 31 2020 07:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47124 * 2 1 4 4 C 1.52996 * 109.46848 * 180.02562 * 3 2 1 5 5 N 1.46507 * 109.47095 * 180.02562 * 4 3 2 6 6 C 1.37166 * 120.00043 * 270.00400 * 5 4 3 7 7 H 1.08001 * 120.00148 * 19.41734 * 6 5 4 8 8 C 1.38895 * 119.99769 * 199.42292 * 6 5 4 9 9 N 1.31452 * 120.00107 * 17.02822 * 8 6 5 10 10 Si 1.86806 * 119.99900 * 197.02828 * 8 6 5 11 11 H 1.48497 * 109.47294 * 89.99555 * 10 8 6 12 12 H 1.48496 * 109.46893 * 210.00032 * 10 8 6 13 13 H 1.48507 * 109.46761 * 329.99717 * 10 8 6 14 14 C 1.34773 * 119.99624 * 90.00212 * 5 4 3 15 15 O 1.21516 * 120.00038 * 242.60705 * 14 5 4 16 16 O 1.34677 * 120.00147 * 62.60779 * 14 5 4 17 17 C 1.36004 * 116.99800 * 181.29077 * 16 14 5 18 18 C 1.38587 * 120.07424 * 266.81037 * 17 16 14 19 19 C 1.38228 * 119.99646 * 180.28201 * 18 17 16 20 20 C 1.38265 * 120.15004 * 359.69619 * 19 18 17 21 21 C 1.38226 * 120.15055 * 0.02772 * 20 19 18 22 22 C 1.38585 * 119.99858 * 359.97438 * 21 20 19 23 23 O 1.35979 * 120.07048 * 179.97438 * 22 21 20 24 24 C 1.42900 * 117.00374 * 0.02562 * 23 22 21 25 25 H 1.08996 * 109.47314 * 59.99456 * 1 2 3 26 26 H 1.08997 * 109.47054 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46648 * 299.99816 * 1 2 3 28 28 H 1.09007 * 109.46586 * 240.00466 * 2 1 3 29 29 H 1.08996 * 109.47314 * 120.00544 * 2 1 3 30 30 H 1.09005 * 109.46541 * 60.00504 * 3 2 1 31 31 H 1.08996 * 109.47469 * 300.00449 * 3 2 1 32 32 H 1.08997 * 109.47241 * 60.00562 * 4 3 2 33 33 H 1.08996 * 109.47410 * 300.00434 * 4 3 2 34 34 H 0.97009 * 120.00277 * 184.96187 * 9 8 6 35 35 H 1.07999 * 120.00246 * 359.97438 * 18 17 16 36 36 H 1.08002 * 119.92424 * 179.72934 * 19 18 17 37 37 H 1.08004 * 119.92628 * 180.02562 * 20 19 18 38 38 H 1.08004 * 119.99698 * 180.02562 * 21 20 19 39 39 H 1.09000 * 109.47022 * 59.99727 * 24 23 22 40 40 H 1.08996 * 109.47012 * 179.97438 * 24 23 22 41 41 H 1.08995 * 109.46603 * 299.99418 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.2865 3.4710 -1.1876 7 1 3.8282 3.1096 -2.0964 8 6 5.1069 4.5913 -1.2215 9 7 5.9216 4.8398 -0.2203 10 14 5.0523 5.7449 -2.6898 11 1 4.0373 6.8022 -2.4513 12 1 6.3855 6.3716 -2.8766 13 1 4.6908 4.9776 -3.9089 14 6 4.2836 3.4582 1.1675 15 8 3.6438 4.4513 1.4525 16 8 5.2176 2.9917 2.0182 17 6 5.3755 3.6632 3.1904 18 6 6.3245 4.6680 3.2927 19 6 6.4876 5.3455 4.4865 20 6 5.7015 5.0275 5.5785 21 6 4.7492 4.0303 5.4816 22 6 4.5804 3.3470 4.2878 23 8 3.6444 2.3654 4.1910 24 6 2.8692 2.0905 5.3596 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9562 0.8901 31 1 1.6767 1.9564 -0.8899 32 1 3.9329 0.9288 -0.8909 33 1 3.9337 0.9284 0.8890 34 1 6.4417 5.6587 -0.2099 35 1 6.9399 4.9184 2.4412 36 1 7.2305 6.1254 4.5662 37 1 5.8318 5.5594 6.5094 38 1 4.1362 3.7841 6.3361 39 1 2.3237 2.9875 5.6529 40 1 2.1620 1.2891 5.1462 41 1 3.5304 1.7857 6.1706 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195252707.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:07 Heat of formation + Delta-G solvation = -73.213837 kcal Electronic energy + Delta-G solvation = -24567.591827 eV Core-core repulsion = 21028.116504 eV Total energy + Delta-G solvation = -3539.475324 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.30517 -38.84149 -37.10304 -36.16922 -34.94828 -33.66402 -31.57629 -29.97809 -29.55263 -28.13420 -27.01452 -25.02377 -23.33782 -22.07851 -21.83162 -20.63698 -20.11770 -18.11670 -17.67911 -16.57563 -16.14009 -15.67989 -15.36278 -14.97909 -14.87560 -14.56948 -14.09762 -13.87647 -13.64043 -13.53736 -13.07268 -12.49661 -12.41130 -12.15711 -12.04999 -11.82873 -11.41266 -11.27477 -11.20602 -10.87585 -10.84187 -10.81554 -10.74703 -10.59842 -10.50254 -10.17353 -9.98652 -9.61405 -9.20449 -8.95238 -8.38469 -7.80101 -7.40251 -6.16077 -3.60856 1.63105 1.79653 3.31047 3.38311 3.39952 3.52111 3.69874 4.08709 4.29285 4.49659 5.06024 5.11771 5.22600 5.27511 5.30127 5.34360 5.41882 5.50462 5.52754 5.57657 5.67614 5.79161 5.86382 6.07637 6.10790 6.21008 6.23540 6.26068 6.37339 6.44179 6.53372 6.55161 6.74214 6.82228 6.89682 7.00850 7.14810 7.52966 7.57770 7.94971 8.18556 9.00444 9.41115 9.57282 10.05162 10.99015 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.010570 B = 0.007749 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2648.493270 B = 3612.647281 C = 5916.834342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C -0.134 4.134 4 C 0.134 3.866 5 N -0.519 5.519 6 C -0.290 4.290 7 H 0.095 0.905 8 C 0.023 3.977 9 N -0.887 5.887 10 Si 0.921 3.079 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.274 1.274 14 C 0.718 3.282 15 O -0.546 6.546 16 O -0.304 6.304 17 C 0.105 3.895 18 C -0.071 4.071 19 C -0.149 4.149 20 C -0.096 4.096 21 C -0.205 4.205 22 C 0.109 3.891 23 O -0.308 6.308 24 C 0.029 3.971 25 H 0.052 0.948 26 H 0.047 0.953 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.267 0.733 35 H 0.145 0.855 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.126 0.874 39 H 0.052 0.948 40 H 0.096 0.904 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.417 -5.779 9.491 11.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.173 4.173 4 C 0.010 3.990 5 N -0.254 5.254 6 C -0.416 4.416 7 H 0.113 0.887 8 C -0.179 4.179 9 N -0.528 5.528 10 Si 0.749 3.251 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.199 1.199 14 C 0.476 3.524 15 O -0.430 6.430 16 O -0.217 6.217 17 C 0.060 3.940 18 C -0.090 4.090 19 C -0.168 4.168 20 C -0.115 4.115 21 C -0.224 4.224 22 C 0.063 3.937 23 O -0.221 6.221 24 C -0.066 4.066 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.162 0.838 36 H 0.142 0.858 37 H 0.139 0.861 38 H 0.144 0.856 39 H 0.071 0.929 40 H 0.115 0.885 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.466 -5.458 9.458 11.457 hybrid contribution 0.024 0.814 -0.362 0.891 sum -3.442 -4.645 9.096 10.778 Atomic orbital electron populations 1.21752 0.96427 1.00734 1.01737 1.21465 0.95333 0.97534 1.01535 1.22062 0.97452 0.95349 1.02470 1.21151 0.92594 0.84302 1.00971 1.41757 1.70404 1.11797 1.01434 1.19226 1.26050 1.11037 0.85257 0.88737 1.25066 0.94224 0.99781 0.98814 1.69482 1.24737 1.25076 1.33488 0.86014 0.77196 0.80840 0.81042 1.20756 1.21330 1.19891 1.17750 0.76496 0.79446 0.78663 1.90725 1.49847 1.27911 1.74563 1.84534 1.55853 1.55214 1.26057 1.17723 0.96800 0.95972 0.83469 1.21340 0.97353 0.91742 0.98523 1.20909 1.01575 1.01438 0.92859 1.20827 0.95379 0.96733 0.98525 1.20970 1.03638 1.01182 0.96631 1.19386 0.89721 0.90211 0.94418 1.86170 1.47488 1.51288 1.37125 1.23001 0.94764 1.01339 0.87520 0.92869 0.93363 0.93013 0.92199 0.92408 0.92521 0.91610 0.91838 0.92935 0.92193 0.83755 0.85790 0.86081 0.85599 0.92930 0.88541 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.91 37.16 0.37 -1.50 16 2 C -0.12 -1.72 5.93 -26.73 -0.16 -1.88 16 3 C -0.13 -2.48 5.54 -26.73 -0.15 -2.63 16 4 C 0.13 2.86 5.62 -4.04 -0.02 2.84 16 5 N -0.52 -13.84 2.63 -120.22 -0.32 -14.16 16 6 C -0.29 -8.05 9.61 -14.92 -0.14 -8.19 16 7 H 0.09 2.45 7.89 -52.49 -0.41 2.04 16 8 C 0.02 0.65 5.10 -17.47 -0.09 0.56 16 9 N -0.89 -25.88 11.40 55.49 0.63 -25.25 16 10 Si 0.92 21.97 29.59 -169.99 -5.03 16.94 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 14 C 0.72 20.15 4.69 54.05 0.25 20.41 16 15 O -0.55 -16.75 16.59 -19.28 -0.32 -17.07 16 16 O -0.30 -8.03 9.79 -30.29 -0.30 -8.33 16 17 C 0.11 2.44 4.94 -39.11 -0.19 2.25 16 18 C -0.07 -1.49 9.98 -39.46 -0.39 -1.89 16 19 C -0.15 -2.51 10.04 -39.58 -0.40 -2.90 16 20 C -0.10 -1.45 10.04 -39.58 -0.40 -1.85 16 21 C -0.21 -3.32 9.04 -39.46 -0.36 -3.68 16 22 C 0.11 2.18 6.70 -39.11 -0.26 1.92 16 23 O -0.31 -5.88 10.28 -34.17 -0.35 -6.23 16 24 C 0.03 0.37 9.81 101.05 0.99 1.36 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.80 8.14 -51.92 -0.42 0.37 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 32 H 0.06 1.26 8.04 -51.93 -0.42 0.84 16 33 H 0.05 1.09 7.98 -51.93 -0.41 0.67 16 34 H 0.27 7.49 8.32 -40.82 -0.34 7.15 16 35 H 0.14 3.21 8.06 -52.49 -0.42 2.79 16 36 H 0.12 1.70 8.06 -52.49 -0.42 1.27 16 37 H 0.12 1.38 8.06 -52.48 -0.42 0.95 16 38 H 0.13 1.60 6.30 -52.48 -0.33 1.27 16 39 H 0.05 0.62 7.66 -51.93 -0.40 0.22 16 40 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 LS Contribution 351.72 15.07 5.30 5.30 Total: -1.00 -34.36 351.72 -7.49 -41.84 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -6.16 Total: 2.14 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: -0.95 Total: 4.82 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: 0.32 Total: -39.40 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: -0.97 Total: -31.64 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.36 -7.49 -41.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195252707.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.370 kcal (2) G-P(sol) polarization free energy of solvation -34.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds