Wall clock time and date at job start Tue Mar 31 2020 07:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47124 * 2 1 4 4 C 1.52996 * 109.46848 * 180.02562 * 3 2 1 5 5 N 1.46507 * 109.47095 * 180.02562 * 4 3 2 6 6 C 1.37166 * 120.00043 * 270.00400 * 5 4 3 7 7 H 1.08001 * 120.00148 * 19.41734 * 6 5 4 8 8 C 1.38895 * 119.99769 * 199.42292 * 6 5 4 9 9 N 1.31452 * 120.00107 * 17.02822 * 8 6 5 10 10 Si 1.86806 * 119.99900 * 197.02828 * 8 6 5 11 11 H 1.48497 * 109.47294 * 89.99555 * 10 8 6 12 12 H 1.48496 * 109.46893 * 210.00032 * 10 8 6 13 13 H 1.48507 * 109.46761 * 329.99717 * 10 8 6 14 14 C 1.34773 * 119.99624 * 90.00212 * 5 4 3 15 15 O 1.21516 * 120.00038 * 242.60705 * 14 5 4 16 16 O 1.34677 * 120.00147 * 62.60779 * 14 5 4 17 17 C 1.36004 * 116.99800 * 181.29077 * 16 14 5 18 18 C 1.38587 * 120.07424 * 266.81037 * 17 16 14 19 19 C 1.38228 * 119.99646 * 180.28201 * 18 17 16 20 20 C 1.38265 * 120.15004 * 359.69619 * 19 18 17 21 21 C 1.38226 * 120.15055 * 0.02772 * 20 19 18 22 22 C 1.38585 * 119.99858 * 359.97438 * 21 20 19 23 23 O 1.35979 * 120.07048 * 179.97438 * 22 21 20 24 24 C 1.42900 * 117.00374 * 0.02562 * 23 22 21 25 25 H 1.08996 * 109.47314 * 59.99456 * 1 2 3 26 26 H 1.08997 * 109.47054 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46648 * 299.99816 * 1 2 3 28 28 H 1.09007 * 109.46586 * 240.00466 * 2 1 3 29 29 H 1.08996 * 109.47314 * 120.00544 * 2 1 3 30 30 H 1.09005 * 109.46541 * 60.00504 * 3 2 1 31 31 H 1.08996 * 109.47469 * 300.00449 * 3 2 1 32 32 H 1.08997 * 109.47241 * 60.00562 * 4 3 2 33 33 H 1.08996 * 109.47410 * 300.00434 * 4 3 2 34 34 H 0.97009 * 120.00277 * 184.96187 * 9 8 6 35 35 H 1.07999 * 120.00246 * 359.97438 * 18 17 16 36 36 H 1.08002 * 119.92424 * 179.72934 * 19 18 17 37 37 H 1.08004 * 119.92628 * 180.02562 * 20 19 18 38 38 H 1.08004 * 119.99698 * 180.02562 * 21 20 19 39 39 H 1.09000 * 109.47022 * 59.99727 * 24 23 22 40 40 H 1.08996 * 109.47012 * 179.97438 * 24 23 22 41 41 H 1.08995 * 109.46603 * 299.99418 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.2865 3.4710 -1.1876 7 1 3.8282 3.1096 -2.0964 8 6 5.1069 4.5913 -1.2215 9 7 5.9216 4.8398 -0.2203 10 14 5.0523 5.7449 -2.6898 11 1 4.0373 6.8022 -2.4513 12 1 6.3855 6.3716 -2.8766 13 1 4.6908 4.9776 -3.9089 14 6 4.2836 3.4582 1.1675 15 8 3.6438 4.4513 1.4525 16 8 5.2176 2.9917 2.0182 17 6 5.3755 3.6632 3.1904 18 6 6.3245 4.6680 3.2927 19 6 6.4876 5.3455 4.4865 20 6 5.7015 5.0275 5.5785 21 6 4.7492 4.0303 5.4816 22 6 4.5804 3.3470 4.2878 23 8 3.6444 2.3654 4.1910 24 6 2.8692 2.0905 5.3596 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9562 0.8901 31 1 1.6767 1.9564 -0.8899 32 1 3.9329 0.9288 -0.8909 33 1 3.9337 0.9284 0.8890 34 1 6.4417 5.6587 -0.2099 35 1 6.9399 4.9184 2.4412 36 1 7.2305 6.1254 4.5662 37 1 5.8318 5.5594 6.5094 38 1 4.1362 3.7841 6.3361 39 1 2.3237 2.9875 5.6529 40 1 2.1620 1.2891 5.1462 41 1 3.5304 1.7857 6.1706 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195252707.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:06 Heat of formation + Delta-G solvation = -93.995347 kcal Electronic energy + Delta-G solvation = -24568.492981 eV Core-core repulsion = 21028.116504 eV Total energy + Delta-G solvation = -3540.376478 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.98887 -40.51758 -38.65360 -37.78403 -36.78373 -35.42599 -33.51979 -31.40891 -30.93323 -29.68699 -28.15200 -27.04639 -24.91878 -23.64415 -23.21267 -22.09192 -21.83325 -20.03744 -19.22789 -18.31013 -17.84241 -17.35941 -16.95848 -16.59893 -16.33447 -15.99134 -15.85961 -15.40584 -15.10832 -14.92578 -14.65534 -14.13867 -13.90632 -13.60419 -13.46387 -13.22319 -13.02504 -12.95569 -12.77245 -12.57847 -12.39053 -12.20955 -12.16570 -12.04043 -12.03561 -11.85382 -11.50469 -11.43734 -11.23412 -10.97946 -9.90731 -9.55101 -9.10335 -8.27089 -5.76435 0.15816 0.39322 1.37711 1.45536 1.53049 1.82047 2.16645 2.32621 2.43410 2.85785 3.17068 3.66045 3.88345 4.01537 4.06757 4.14430 4.23424 4.31829 4.36495 4.38960 4.43476 4.46423 4.59850 4.66399 4.67939 4.83165 4.88006 4.96088 5.00896 5.14374 5.22104 5.32971 5.36128 5.41149 5.43464 5.48395 5.52924 5.70163 5.94087 6.08428 6.43445 6.88659 7.38081 7.51060 7.97888 8.87117 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.010570 B = 0.007749 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2648.493270 B = 3612.647281 C = 5916.834342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.113 4.113 3 C -0.121 4.121 4 C 0.130 3.870 5 N -0.539 5.539 6 C -0.306 4.306 7 H 0.108 0.892 8 C -0.035 4.035 9 N -0.916 5.916 10 Si 0.989 3.011 11 H -0.291 1.291 12 H -0.285 1.285 13 H -0.250 1.250 14 C 0.721 3.279 15 O -0.590 6.590 16 O -0.316 6.316 17 C 0.042 3.958 18 C -0.095 4.095 19 C -0.148 4.148 20 C -0.075 4.075 21 C -0.198 4.198 22 C 0.098 3.902 23 O -0.342 6.342 24 C 0.018 3.982 25 H 0.052 0.948 26 H 0.073 0.927 27 H 0.046 0.954 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.031 0.969 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.051 0.949 34 H 0.263 0.737 35 H 0.115 0.885 36 H 0.156 0.844 37 H 0.175 0.825 38 H 0.168 0.832 39 H 0.063 0.937 40 H 0.115 0.885 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.265 -6.130 11.140 13.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.151 4.151 3 C -0.161 4.161 4 C 0.007 3.993 5 N -0.275 5.275 6 C -0.432 4.432 7 H 0.126 0.874 8 C -0.234 4.234 9 N -0.558 5.558 10 Si 0.814 3.186 11 H -0.218 1.218 12 H -0.211 1.211 13 H -0.174 1.174 14 C 0.481 3.519 15 O -0.478 6.478 16 O -0.228 6.228 17 C -0.002 4.002 18 C -0.114 4.114 19 C -0.166 4.166 20 C -0.093 4.093 21 C -0.216 4.216 22 C 0.052 3.948 23 O -0.256 6.256 24 C -0.076 4.076 25 H 0.071 0.929 26 H 0.092 0.908 27 H 0.065 0.935 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.133 0.867 36 H 0.174 0.826 37 H 0.193 0.807 38 H 0.186 0.814 39 H 0.082 0.918 40 H 0.133 0.867 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.314 -5.867 11.114 13.287 hybrid contribution 0.276 0.896 -0.686 1.162 sum -4.038 -4.971 10.428 12.238 Atomic orbital electron populations 1.21732 0.94766 1.02341 1.01540 1.21426 0.96711 0.94267 1.02667 1.21929 0.95263 0.98195 1.00674 1.21407 0.94267 0.82072 1.01518 1.42039 1.70896 1.13615 1.00946 1.19673 1.25712 1.11768 0.86000 0.87444 1.26086 0.94056 1.01359 1.01855 1.69639 1.25497 1.25133 1.35557 0.84964 0.76751 0.78331 0.78533 1.21774 1.21056 1.17364 1.17931 0.76156 0.78824 0.79023 1.90647 1.51449 1.29881 1.75841 1.84487 1.54926 1.55847 1.27529 1.18316 0.99923 0.98630 0.83319 1.21329 0.97524 0.92808 0.99715 1.21294 1.02395 1.01181 0.91688 1.21455 0.92933 0.95322 0.99569 1.21498 1.03790 1.00133 0.96182 1.19544 0.89608 0.90923 0.94774 1.86118 1.47835 1.51109 1.40537 1.23400 0.95108 1.02590 0.86503 0.92897 0.90805 0.93478 0.90669 0.91655 0.95024 0.92618 0.90391 0.93065 0.92727 0.86714 0.82588 0.80737 0.81422 0.91822 0.86665 0.90306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 9.91 71.98 0.71 -2.69 16 2 C -0.11 -3.08 5.93 30.60 0.18 -2.90 16 3 C -0.12 -4.59 5.54 30.59 0.17 -4.42 16 4 C 0.13 5.74 5.62 86.38 0.49 6.22 16 5 N -0.54 -30.08 2.63 -764.67 -2.01 -32.09 16 6 C -0.31 -17.50 9.61 84.02 0.81 -16.69 16 7 H 0.11 5.66 7.89 -2.91 -0.02 5.63 16 8 C -0.04 -2.06 5.10 84.91 0.43 -1.63 16 9 N -0.92 -56.22 11.40 21.66 0.25 -55.97 16 10 Si 0.99 46.23 29.59 68.60 2.03 48.26 16 11 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 12 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 13 H -0.25 -10.60 7.11 99.48 0.71 -9.90 16 14 C 0.72 42.81 4.69 129.79 0.61 43.42 16 15 O -0.59 -38.39 16.59 19.79 0.33 -38.06 16 16 O -0.32 -17.83 9.79 4.62 0.05 -17.78 16 17 C 0.04 2.04 4.94 22.57 0.11 2.15 16 18 C -0.09 -4.19 9.98 22.35 0.22 -3.97 16 19 C -0.15 -4.75 10.04 22.27 0.22 -4.53 16 20 C -0.08 -1.98 10.04 22.27 0.22 -1.76 16 21 C -0.20 -5.82 9.04 22.35 0.20 -5.62 16 22 C 0.10 3.94 6.70 22.57 0.15 4.09 16 23 O -0.34 -13.19 10.28 -79.45 -0.82 -14.01 16 24 C 0.02 0.42 9.81 113.37 1.11 1.53 16 25 H 0.05 1.22 8.14 -2.39 -0.02 1.21 16 26 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 29 H 0.06 1.69 8.14 -2.39 -0.02 1.68 16 30 H 0.03 1.32 8.14 -2.38 -0.02 1.31 16 31 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.08 3.14 8.04 -2.39 -0.02 3.12 16 33 H 0.05 2.22 7.98 -2.39 -0.02 2.20 16 34 H 0.26 15.55 8.32 -92.70 -0.77 14.78 16 35 H 0.11 5.59 8.06 -2.91 -0.02 5.56 16 36 H 0.16 3.90 8.06 -2.91 -0.02 3.88 16 37 H 0.18 2.81 8.06 -2.91 -0.02 2.79 16 38 H 0.17 3.45 6.30 -2.91 -0.02 3.43 16 39 H 0.06 1.33 7.66 -2.39 -0.02 1.31 16 40 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.08 1.40 7.66 -2.39 -0.02 1.38 16 Total: -1.00 -81.49 351.72 6.48 -75.01 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: 1.01 Total: 21.43 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: 5.65 Total: 13.22 kcal Atomic # 7 Polarization: -86.30 SS G_CDS: -1.76 Total: -88.06 kcal Atomic # 8 Polarization: -69.41 SS G_CDS: -0.44 Total: -69.85 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -81.49 6.48 -75.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195252707.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.989 kcal (2) G-P(sol) polarization free energy of solvation -81.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds