Wall clock time and date at job start Tue Mar 31 2020 07:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47061 * 2 1 4 4 C 1.52999 * 109.47377 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47231 * 180.02562 * 4 3 2 6 6 C 1.36935 * 119.99717 * 96.33335 * 5 4 3 7 7 H 1.08001 * 119.99604 * 221.44814 * 6 5 4 8 8 C 1.38998 * 120.00394 * 41.17763 * 6 5 4 9 9 N 1.31402 * 119.99709 * 10.55231 * 8 6 5 10 10 Si 1.86797 * 120.00019 * 190.55699 * 8 6 5 11 11 H 1.48506 * 109.47072 * 59.99918 * 10 8 6 12 12 H 1.48500 * 109.46927 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47226 * 299.99828 * 10 8 6 14 14 C 1.34768 * 119.99791 * 276.32864 * 5 4 3 15 15 O 1.21655 * 120.00574 * 354.84931 * 14 5 4 16 16 C 1.47200 * 120.00057 * 174.84128 * 14 5 4 17 17 C 1.39896 * 120.13838 * 45.20922 * 16 14 5 18 18 C 1.36553 * 120.08244 * 179.78475 * 17 16 14 19 19 C 1.39180 * 120.37307 * 0.47082 * 18 17 16 20 20 O 1.35719 * 119.85717 * 179.75906 * 19 18 17 21 21 C 1.38721 * 120.28442 * 359.78873 * 19 18 17 22 22 C 1.38461 * 119.91162 * 359.96746 * 21 19 18 23 23 O 1.35658 * 120.18467 * 180.02562 * 22 21 19 24 24 C 1.42900 * 117.00434 * 359.97438 * 23 22 21 25 25 H 1.09004 * 109.47028 * 299.99556 * 1 2 3 26 26 H 1.08992 * 109.47080 * 59.99877 * 1 2 3 27 27 H 1.09000 * 109.46642 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47341 * 240.00416 * 2 1 3 29 29 H 1.09001 * 109.47594 * 119.99875 * 2 1 3 30 30 H 1.09003 * 109.47332 * 60.00143 * 3 2 1 31 31 H 1.08995 * 109.47206 * 300.00525 * 3 2 1 32 32 H 1.08995 * 109.47248 * 59.99674 * 4 3 2 33 33 H 1.09008 * 109.47025 * 300.00140 * 4 3 2 34 34 H 0.97001 * 119.99707 * 179.97438 * 9 8 6 35 35 H 1.07996 * 119.96185 * 0.02562 * 17 16 14 36 36 H 1.08000 * 119.81531 * 180.20777 * 18 17 16 37 37 H 0.96700 * 113.99967 * 270.02021 * 20 19 18 38 38 H 1.07998 * 120.04624 * 180.02562 * 21 19 18 39 39 H 1.08999 * 109.46816 * 59.99195 * 24 23 22 40 40 H 1.08994 * 109.47634 * 179.97438 * 24 23 22 41 41 H 1.09001 * 109.47016 * 300.00174 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0582 2.8239 0.0000 6 6 4.4103 3.4250 1.1789 7 1 4.1347 4.4527 1.3643 8 6 5.1173 2.7110 2.1392 9 7 5.6274 1.5371 1.8417 10 14 5.3422 3.4201 3.8527 11 1 4.0123 3.6398 4.4759 12 1 6.1263 2.4703 4.6824 13 1 6.0662 4.7135 3.7621 14 6 4.1610 3.5027 -1.1597 15 8 3.9384 2.9407 -2.2154 16 6 4.5425 4.9244 -1.1490 17 6 5.6045 5.3607 -0.3498 18 6 5.9602 6.6790 -0.3441 19 6 5.2650 7.5989 -1.1236 20 8 5.6243 8.9075 -1.1062 21 6 4.2059 7.1840 -1.9177 22 6 3.8384 5.8492 -1.9363 23 8 2.8040 5.4373 -2.7113 24 6 2.1351 6.4354 -3.4847 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9563 -0.8899 32 1 3.9329 0.9289 -0.8908 33 1 3.9337 0.9286 0.8892 34 1 6.1212 1.0390 2.5118 35 1 6.1463 4.6533 0.2605 36 1 6.7830 7.0106 0.2720 37 1 5.1700 9.4312 -0.4321 38 1 3.6694 7.9010 -2.5214 39 1 2.8450 6.9021 -4.1676 40 1 1.3309 5.9732 -4.0572 41 1 1.7195 7.1924 -2.8196 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197169419.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:56 Heat of formation + Delta-G solvation = -93.432367 kcal Electronic energy + Delta-G solvation = -24268.099542 eV Core-core repulsion = 20727.747477 eV Total energy + Delta-G solvation = -3540.352065 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.09756 -38.29694 -38.04035 -35.65892 -35.11975 -33.90309 -31.46440 -30.12781 -29.70917 -28.18130 -26.86071 -24.96186 -23.54590 -22.09274 -21.66592 -20.39869 -19.28019 -18.59926 -17.60566 -16.58772 -16.05588 -15.69699 -15.39891 -14.83648 -14.69965 -14.51942 -14.36961 -13.83701 -13.79415 -13.52180 -13.02831 -12.80072 -12.19842 -12.13081 -12.09634 -11.79418 -11.75613 -11.42237 -11.17287 -11.07109 -10.94068 -10.64477 -10.55822 -10.47325 -10.36504 -10.29641 -10.15822 -9.68797 -9.05643 -8.48560 -8.32767 -7.72095 -7.41174 -6.34408 -4.11902 1.44579 1.86911 3.10537 3.18451 3.19483 3.61646 3.72728 4.07245 4.24914 4.47909 4.77141 5.03518 5.18068 5.25335 5.31855 5.50789 5.53159 5.54051 5.62856 5.69884 5.72131 5.96441 6.12915 6.19860 6.24774 6.28499 6.39985 6.46669 6.58724 6.69650 6.73118 6.81349 6.91252 6.94962 7.16356 7.20574 7.36652 7.55985 7.66369 7.89119 8.00201 8.40454 9.05688 9.53675 9.97518 10.65332 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.011635 B = 0.006907 C = 0.004745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.025860 B = 4053.028685 C = 5899.132924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C -0.129 4.129 4 C 0.117 3.883 5 N -0.434 5.434 6 C -0.333 4.333 7 H 0.087 0.913 8 C 0.042 3.958 9 N -0.864 5.864 10 Si 0.913 3.087 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.270 1.270 14 C 0.521 3.479 15 O -0.586 6.586 16 C -0.129 4.129 17 C -0.009 4.009 18 C -0.197 4.197 19 C 0.142 3.858 20 O -0.502 6.502 21 C -0.252 4.252 22 C 0.172 3.828 23 O -0.291 6.291 24 C 0.026 3.974 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.046 0.954 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.110 0.890 34 H 0.271 0.729 35 H 0.157 0.843 36 H 0.127 0.873 37 H 0.387 0.613 38 H 0.130 0.870 39 H 0.052 0.948 40 H 0.097 0.903 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.823 7.893 -1.391 9.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C -0.168 4.168 4 C -0.006 4.006 5 N -0.152 5.152 6 C -0.462 4.462 7 H 0.105 0.895 8 C -0.163 4.163 9 N -0.501 5.501 10 Si 0.740 3.260 11 H -0.198 1.198 12 H -0.208 1.208 13 H -0.195 1.195 14 C 0.309 3.691 15 O -0.471 6.471 16 C -0.133 4.133 17 C -0.028 4.028 18 C -0.216 4.216 19 C 0.097 3.903 20 O -0.312 6.312 21 C -0.272 4.272 22 C 0.124 3.876 23 O -0.203 6.203 24 C -0.069 4.069 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.127 0.873 34 H 0.081 0.919 35 H 0.174 0.826 36 H 0.145 0.855 37 H 0.243 0.757 38 H 0.148 0.852 39 H 0.071 0.929 40 H 0.115 0.885 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.539 7.054 -2.285 8.694 hybrid contribution -0.211 0.906 1.308 1.605 sum -4.750 7.960 -0.977 9.321 Atomic orbital electron populations 1.21756 0.96743 1.00597 1.01427 1.21417 0.94867 0.97781 1.01584 1.21932 0.98162 0.95438 1.01250 1.21444 0.90712 0.84757 1.03692 1.43275 1.55287 1.11865 1.04791 1.19397 1.34380 0.98750 0.93649 0.89519 1.25429 0.94816 0.96121 0.99969 1.69806 1.32575 1.12994 1.34719 0.86211 0.78661 0.78971 0.82199 1.19834 1.20820 1.19522 1.17962 0.80827 0.85973 0.84313 1.90647 1.55342 1.69996 1.31155 1.19527 0.98986 0.94619 1.00142 1.21229 0.93473 0.95146 0.92948 1.21012 1.03415 0.93875 1.03250 1.18287 0.92989 0.83617 0.95406 1.84733 1.68091 1.18217 1.60154 1.21214 1.02569 0.95256 1.08118 1.18848 0.87457 0.91135 0.90121 1.86268 1.43075 1.35576 1.55352 1.23032 0.96888 0.92276 0.94726 0.93104 0.93118 0.93469 0.92409 0.92260 0.92518 0.92917 0.93063 0.87271 0.91894 0.82596 0.85527 0.75725 0.85233 0.92936 0.88502 0.93101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.91 37.16 0.37 -1.78 16 2 C -0.12 -2.04 5.93 -26.73 -0.16 -2.20 16 3 C -0.13 -2.70 5.49 -26.73 -0.15 -2.85 16 4 C 0.12 2.83 4.87 -4.04 -0.02 2.81 16 5 N -0.43 -11.04 2.52 -116.10 -0.29 -11.33 16 6 C -0.33 -8.21 6.55 -14.99 -0.10 -8.31 16 7 H 0.09 2.09 6.69 -52.49 -0.35 1.73 16 8 C 0.04 1.02 5.13 -17.45 -0.09 0.93 16 9 N -0.86 -22.10 11.16 55.50 0.62 -21.48 16 10 Si 0.91 18.82 29.57 -169.99 -5.03 13.79 16 11 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 12 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 13 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 14 C 0.52 13.41 6.95 -12.62 -0.09 13.32 16 15 O -0.59 -16.51 16.03 -7.30 -0.12 -16.63 16 16 C -0.13 -2.90 5.20 -104.83 -0.55 -3.44 16 17 C -0.01 -0.19 7.82 -39.57 -0.31 -0.50 16 18 C -0.20 -3.37 9.91 -39.84 -0.39 -3.77 16 19 C 0.14 2.28 6.71 -39.05 -0.26 2.02 16 20 O -0.50 -6.67 13.48 -18.86 -0.25 -6.92 16 21 C -0.25 -4.18 8.97 -39.32 -0.35 -4.54 16 22 C 0.17 3.43 6.67 -38.69 -0.26 3.17 16 23 O -0.29 -5.73 9.43 -31.20 -0.29 -6.02 16 24 C 0.03 0.35 9.81 101.05 0.99 1.34 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.05 1.30 7.55 -51.93 -0.39 0.91 16 33 H 0.11 2.75 5.47 -51.92 -0.28 2.47 16 34 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 35 H 0.16 3.34 6.57 -52.49 -0.34 3.00 16 36 H 0.13 1.89 8.06 -52.49 -0.42 1.47 16 37 H 0.39 3.15 9.06 45.56 0.41 3.56 16 38 H 0.13 1.79 6.31 -52.49 -0.33 1.45 16 39 H 0.05 0.62 7.66 -51.93 -0.40 0.22 16 40 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.05 0.57 7.67 -51.93 -0.40 0.17 16 LS Contribution 341.93 15.07 5.15 5.15 Total: -1.00 -31.02 341.93 -6.60 -37.62 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -5.03 Total: 9.60 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -1.36 Total: -3.78 kcal Atomic # 7 Polarization: -33.14 SS G_CDS: 0.33 Total: -32.81 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -0.67 Total: -29.57 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.02 -6.60 -37.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197169419.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.816 kcal (2) G-P(sol) polarization free energy of solvation -31.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds