Wall clock time and date at job start Tue Mar 31 2020 07:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47061 * 2 1 4 4 C 1.52999 * 109.47377 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47231 * 180.02562 * 4 3 2 6 6 C 1.36935 * 119.99717 * 96.33335 * 5 4 3 7 7 H 1.08001 * 119.99604 * 221.44814 * 6 5 4 8 8 C 1.38998 * 120.00394 * 41.17763 * 6 5 4 9 9 N 1.31402 * 119.99709 * 10.55231 * 8 6 5 10 10 Si 1.86797 * 120.00019 * 190.55699 * 8 6 5 11 11 H 1.48506 * 109.47072 * 59.99918 * 10 8 6 12 12 H 1.48500 * 109.46927 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47226 * 299.99828 * 10 8 6 14 14 C 1.34768 * 119.99791 * 276.32864 * 5 4 3 15 15 O 1.21655 * 120.00574 * 354.84931 * 14 5 4 16 16 C 1.47200 * 120.00057 * 174.84128 * 14 5 4 17 17 C 1.39896 * 120.13838 * 45.20922 * 16 14 5 18 18 C 1.36553 * 120.08244 * 179.78475 * 17 16 14 19 19 C 1.39180 * 120.37307 * 0.47082 * 18 17 16 20 20 O 1.35719 * 119.85717 * 179.75906 * 19 18 17 21 21 C 1.38721 * 120.28442 * 359.78873 * 19 18 17 22 22 C 1.38461 * 119.91162 * 359.96746 * 21 19 18 23 23 O 1.35658 * 120.18467 * 180.02562 * 22 21 19 24 24 C 1.42900 * 117.00434 * 359.97438 * 23 22 21 25 25 H 1.09004 * 109.47028 * 299.99556 * 1 2 3 26 26 H 1.08992 * 109.47080 * 59.99877 * 1 2 3 27 27 H 1.09000 * 109.46642 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47341 * 240.00416 * 2 1 3 29 29 H 1.09001 * 109.47594 * 119.99875 * 2 1 3 30 30 H 1.09003 * 109.47332 * 60.00143 * 3 2 1 31 31 H 1.08995 * 109.47206 * 300.00525 * 3 2 1 32 32 H 1.08995 * 109.47248 * 59.99674 * 4 3 2 33 33 H 1.09008 * 109.47025 * 300.00140 * 4 3 2 34 34 H 0.97001 * 119.99707 * 179.97438 * 9 8 6 35 35 H 1.07996 * 119.96185 * 0.02562 * 17 16 14 36 36 H 1.08000 * 119.81531 * 180.20777 * 18 17 16 37 37 H 0.96700 * 113.99967 * 270.02021 * 20 19 18 38 38 H 1.07998 * 120.04624 * 180.02562 * 21 19 18 39 39 H 1.08999 * 109.46816 * 59.99195 * 24 23 22 40 40 H 1.08994 * 109.47634 * 179.97438 * 24 23 22 41 41 H 1.09001 * 109.47016 * 300.00174 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0582 2.8239 0.0000 6 6 4.4103 3.4250 1.1789 7 1 4.1347 4.4527 1.3643 8 6 5.1173 2.7110 2.1392 9 7 5.6274 1.5371 1.8417 10 14 5.3422 3.4201 3.8527 11 1 4.0123 3.6398 4.4759 12 1 6.1263 2.4703 4.6824 13 1 6.0662 4.7135 3.7621 14 6 4.1610 3.5027 -1.1597 15 8 3.9384 2.9407 -2.2154 16 6 4.5425 4.9244 -1.1490 17 6 5.6045 5.3607 -0.3498 18 6 5.9602 6.6790 -0.3441 19 6 5.2650 7.5989 -1.1236 20 8 5.6243 8.9075 -1.1062 21 6 4.2059 7.1840 -1.9177 22 6 3.8384 5.8492 -1.9363 23 8 2.8040 5.4373 -2.7113 24 6 2.1351 6.4354 -3.4847 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9563 -0.8899 32 1 3.9329 0.9289 -0.8908 33 1 3.9337 0.9286 0.8892 34 1 6.1212 1.0390 2.5118 35 1 6.1463 4.6533 0.2605 36 1 6.7830 7.0106 0.2720 37 1 5.1700 9.4312 -0.4321 38 1 3.6694 7.9010 -2.5214 39 1 2.8450 6.9021 -4.1676 40 1 1.3309 5.9732 -4.0572 41 1 1.7195 7.1924 -2.8196 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197169419.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:56 Heat of formation + Delta-G solvation = -113.601980 kcal Electronic energy + Delta-G solvation = -24268.974162 eV Core-core repulsion = 20727.747477 eV Total energy + Delta-G solvation = -3541.226685 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.56841 -40.06370 -39.30264 -37.13725 -36.87113 -35.53567 -33.36965 -31.56084 -31.11372 -29.71356 -28.05340 -26.85818 -25.10436 -23.58388 -23.06197 -21.98405 -21.14249 -19.89863 -19.26923 -17.96469 -17.72642 -17.21920 -16.70146 -16.45350 -16.34646 -16.09427 -15.78521 -15.48923 -15.30323 -14.88985 -14.60093 -14.30338 -13.81527 -13.69731 -13.53434 -13.18287 -13.11201 -13.04697 -12.81161 -12.71900 -12.34228 -12.13763 -12.06758 -11.96130 -11.88361 -11.76027 -11.58903 -11.43267 -10.94805 -10.39838 -9.76309 -9.40785 -9.13267 -8.22756 -6.07068 0.02094 0.46310 1.46709 1.49911 1.58453 2.05082 2.33210 2.36730 2.68550 2.98218 3.19262 3.24576 3.91871 4.03523 4.08914 4.20162 4.21063 4.29487 4.35275 4.37285 4.46070 4.56535 4.66140 4.72656 4.83949 4.88795 4.92668 5.00348 5.03742 5.17742 5.19660 5.35624 5.37087 5.43401 5.46137 5.50973 5.61026 5.75385 6.08037 6.42266 6.48824 6.86419 7.13575 7.59685 8.04825 8.78354 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.011635 B = 0.006907 C = 0.004745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.025860 B = 4053.028685 C = 5899.132924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.114 4.114 3 C -0.115 4.115 4 C 0.119 3.881 5 N -0.445 5.445 6 C -0.341 4.341 7 H 0.091 0.909 8 C 0.004 3.996 9 N -0.898 5.898 10 Si 0.980 3.020 11 H -0.269 1.269 12 H -0.284 1.284 13 H -0.256 1.256 14 C 0.508 3.492 15 O -0.628 6.628 16 C -0.176 4.176 17 C -0.016 4.016 18 C -0.195 4.195 19 C 0.168 3.832 20 O -0.497 6.497 21 C -0.244 4.244 22 C 0.167 3.833 23 O -0.329 6.329 24 C 0.016 3.984 25 H 0.056 0.944 26 H 0.049 0.951 27 H 0.072 0.928 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.033 0.967 32 H 0.024 0.976 33 H 0.099 0.901 34 H 0.272 0.728 35 H 0.133 0.867 36 H 0.152 0.848 37 H 0.416 0.584 38 H 0.164 0.836 39 H 0.068 0.932 40 H 0.112 0.888 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.440 10.713 -0.470 12.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.152 4.152 3 C -0.153 4.153 4 C -0.005 4.005 5 N -0.162 5.162 6 C -0.469 4.469 7 H 0.108 0.892 8 C -0.199 4.199 9 N -0.535 5.535 10 Si 0.803 3.197 11 H -0.194 1.194 12 H -0.209 1.209 13 H -0.180 1.180 14 C 0.298 3.702 15 O -0.516 6.516 16 C -0.179 4.179 17 C -0.034 4.034 18 C -0.214 4.214 19 C 0.122 3.878 20 O -0.312 6.312 21 C -0.263 4.263 22 C 0.119 3.881 23 O -0.241 6.241 24 C -0.078 4.078 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.091 0.909 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.043 0.957 33 H 0.117 0.883 34 H 0.082 0.918 35 H 0.151 0.849 36 H 0.169 0.831 37 H 0.277 0.723 38 H 0.181 0.819 39 H 0.087 0.913 40 H 0.131 0.869 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.174 9.912 -1.346 11.262 hybrid contribution 0.002 0.150 0.934 0.945 sum -5.173 10.062 -0.412 11.321 Atomic orbital electron populations 1.21705 0.94070 1.02400 1.01712 1.21398 0.97163 0.94938 1.01745 1.21781 0.95653 0.97899 0.99998 1.21404 0.92870 0.84522 1.01666 1.43548 1.55194 1.12098 1.05316 1.19587 1.34777 0.99057 0.93447 0.89154 1.26236 0.94019 0.96199 1.03407 1.69930 1.33320 1.14322 1.35975 0.85184 0.78677 0.78669 0.77171 1.19401 1.20887 1.17993 1.18617 0.80171 0.87694 0.83712 1.90577 1.57350 1.71345 1.32355 1.19439 1.01659 0.93191 1.03650 1.20983 0.93191 0.96286 0.92984 1.21188 1.04053 0.92540 1.03600 1.18240 0.91360 0.84740 0.93426 1.84672 1.68438 1.16640 1.61411 1.21469 1.02619 0.94156 1.08063 1.18954 0.87496 0.91955 0.89699 1.86218 1.43338 1.38692 1.55899 1.23408 0.97358 0.92056 0.95016 0.92510 0.93171 0.90898 0.92621 0.91754 0.92790 0.94825 0.95716 0.88323 0.91789 0.84881 0.83050 0.72350 0.81884 0.91339 0.86943 0.90761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.94 9.91 71.98 0.71 -3.23 16 2 C -0.11 -4.00 5.93 30.59 0.18 -3.81 16 3 C -0.11 -5.02 5.49 30.59 0.17 -4.85 16 4 C 0.12 6.11 4.87 86.38 0.42 6.54 16 5 N -0.44 -23.89 2.52 -639.48 -1.61 -25.50 16 6 C -0.34 -17.35 6.55 84.08 0.55 -16.80 16 7 H 0.09 4.45 6.69 -2.91 -0.02 4.43 16 8 C 0.00 0.18 5.13 84.94 0.44 0.62 16 9 N -0.90 -47.48 11.16 21.67 0.24 -47.23 16 10 Si 0.98 38.44 29.57 68.60 2.03 40.47 16 11 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 12 H -0.28 -11.08 7.11 99.48 0.71 -10.38 16 13 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 14 C 0.51 27.74 6.95 86.60 0.60 28.35 16 15 O -0.63 -37.81 16.03 7.78 0.12 -37.68 16 16 C -0.18 -8.15 5.20 -20.00 -0.10 -8.25 16 17 C -0.02 -0.64 7.82 22.28 0.17 -0.46 16 18 C -0.20 -6.30 9.91 22.10 0.22 -6.08 16 19 C 0.17 4.80 6.71 22.61 0.15 4.96 16 20 O -0.50 -10.70 13.48 -90.41 -1.22 -11.92 16 21 C -0.24 -7.41 8.97 22.44 0.20 -7.20 16 22 C 0.17 6.61 6.67 22.85 0.15 6.77 16 23 O -0.33 -13.02 9.43 -77.75 -0.73 -13.76 16 24 C 0.02 0.38 9.81 113.37 1.11 1.50 16 25 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 26 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.02 1.35 7.55 -2.39 -0.02 1.34 16 33 H 0.10 5.27 5.47 -2.38 -0.01 5.25 16 34 H 0.27 13.58 8.31 -92.71 -0.77 12.80 16 35 H 0.13 5.96 6.57 -2.91 -0.02 5.94 16 36 H 0.15 4.06 8.06 -2.91 -0.02 4.03 16 37 H 0.42 4.42 9.06 -74.06 -0.67 3.75 16 38 H 0.16 3.76 6.31 -2.91 -0.02 3.75 16 39 H 0.07 1.44 7.66 -2.39 -0.02 1.42 16 40 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.07 1.45 7.67 -2.39 -0.02 1.43 16 Total: -1.00 -71.54 341.93 4.19 -67.35 By element: Atomic # 1 Polarization: 29.87 SS G_CDS: 0.38 Total: 30.25 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: 4.98 Total: -1.98 kcal Atomic # 7 Polarization: -71.36 SS G_CDS: -1.37 Total: -72.73 kcal Atomic # 8 Polarization: -61.53 SS G_CDS: -1.83 Total: -63.36 kcal Atomic # 14 Polarization: 38.44 SS G_CDS: 2.03 Total: 40.47 kcal Total: -71.54 4.19 -67.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197169419.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.250 kcal (2) G-P(sol) polarization free energy of solvation -71.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds