Wall clock time and date at job start Tue Mar 31 2020 07:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47194 * 2 1 4 4 C 1.53004 * 109.47194 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47041 * 179.97438 * 4 3 2 6 6 C 1.46501 * 120.00320 * 270.00040 * 5 4 3 7 7 C 1.50700 * 109.46673 * 270.00421 * 6 5 4 8 8 H 1.07995 * 120.00271 * 359.97438 * 7 6 5 9 9 C 1.37877 * 119.99387 * 180.02562 * 7 6 5 10 10 N 1.31522 * 119.99888 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 120.00354 * 359.97438 * 9 7 6 12 12 H 1.48507 * 109.47060 * 90.00429 * 11 9 7 13 13 H 1.48497 * 109.47282 * 210.00003 * 11 9 7 14 14 H 1.48498 * 109.47082 * 330.00496 * 11 9 7 15 15 C 1.34776 * 119.99800 * 89.99955 * 5 4 3 16 16 S 1.71201 * 120.00035 * 179.97438 * 15 5 4 17 17 N 1.34784 * 120.00345 * 0.02562 * 15 5 4 18 18 C 1.39904 * 120.00101 * 185.51565 * 17 15 5 19 19 C 1.39291 * 120.49272 * 41.31469 * 18 17 15 20 20 C 1.38499 * 118.36326 * 179.97438 * 19 18 17 21 21 C 1.38276 * 119.23771 * 0.25774 * 20 19 18 22 22 N 1.31858 * 120.92035 * 359.49294 * 21 20 19 23 23 C 1.31823 * 121.79378 * 0.49696 * 22 21 20 24 24 H 1.08998 * 109.46963 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46863 * 300.00385 * 1 2 3 26 26 H 1.09002 * 109.46981 * 59.99531 * 1 2 3 27 27 H 1.09004 * 109.47140 * 240.00345 * 2 1 3 28 28 H 1.09003 * 109.47112 * 119.99930 * 2 1 3 29 29 H 1.08997 * 109.47161 * 59.99921 * 3 2 1 30 30 H 1.09003 * 109.47034 * 299.99978 * 3 2 1 31 31 H 1.08997 * 109.47131 * 59.99903 * 4 3 2 32 32 H 1.08997 * 109.46686 * 299.99798 * 4 3 2 33 33 H 1.09000 * 109.46675 * 29.99744 * 6 5 4 34 34 H 1.08994 * 109.46960 * 150.00208 * 6 5 4 35 35 H 0.96999 * 119.99804 * 179.97438 * 10 9 7 36 36 H 0.97005 * 119.99151 * 5.51934 * 17 15 5 37 37 H 1.07998 * 120.81582 * 359.95794 * 19 18 17 38 38 H 1.08004 * 120.38353 * 179.97438 * 20 19 18 39 39 H 1.07994 * 119.53928 * 179.72409 * 21 20 19 40 40 H 1.07995 * 119.66594 * 179.75785 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.3031 3.5137 -1.2690 7 6 5.7266 3.2765 -1.7032 8 1 6.3834 2.6727 -1.0947 9 6 6.1907 3.8313 -2.8770 10 7 7.4331 3.6248 -3.2558 11 14 5.0549 4.8763 -3.9293 12 1 5.1575 6.2967 -3.5082 13 1 5.4491 4.7533 -5.3557 14 1 3.6552 4.4099 -3.7605 15 6 4.2825 3.4597 1.1670 16 16 4.8538 5.0736 1.1663 17 7 4.0579 2.8249 2.3345 18 6 4.1791 3.5193 3.5430 19 6 3.6933 4.8192 3.6630 20 6 3.8361 5.4654 4.8797 21 6 4.4561 4.8066 5.9255 22 7 4.9012 3.5739 5.7810 23 6 4.7852 2.9228 4.6407 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9338 0.9285 -0.8891 32 1 3.9330 0.9288 0.8909 33 1 3.6227 3.1290 -2.0287 34 1 4.1361 4.5829 -1.1393 35 1 7.7595 4.0149 -4.0818 36 1 3.8122 1.8865 2.3368 37 1 3.2171 5.3112 2.8278 38 1 3.4717 6.4738 5.0088 39 1 4.5741 5.3075 6.8750 40 1 5.1655 1.9153 4.5593 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199896878.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:53 Heat of formation + Delta-G solvation = 56.157437 kcal Electronic energy + Delta-G solvation = -21141.538737 eV Core-core repulsion = 18082.718995 eV Total energy + Delta-G solvation = -3058.819742 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.48771 -39.02372 -36.12584 -34.82348 -32.62821 -31.98791 -30.18371 -29.81973 -27.71017 -25.04853 -23.71192 -23.49433 -22.20799 -21.52196 -20.62259 -18.35299 -17.69664 -17.05298 -16.78781 -16.09255 -15.67134 -15.26974 -14.77889 -14.56841 -14.01558 -13.91272 -13.82892 -13.26266 -13.11292 -12.90185 -12.68148 -12.42637 -12.18604 -11.91493 -11.59955 -11.44459 -11.32088 -11.14031 -10.79609 -10.67873 -10.50850 -10.38260 -9.82066 -9.63973 -9.51265 -9.21603 -8.64929 -8.11707 -7.17381 -6.50125 -6.14693 -4.14964 1.01433 1.43435 1.95995 2.42356 3.02562 3.25631 3.30112 3.36443 3.48614 3.92205 4.34378 4.54401 4.63252 4.68139 4.85171 4.92427 4.97479 5.04162 5.17041 5.21965 5.33006 5.39506 5.40270 5.55358 5.57077 5.67819 5.75280 5.91367 5.98814 6.05376 6.12013 6.17164 6.32382 6.40054 6.63954 6.81881 6.97984 7.25649 7.43446 7.61154 8.02010 8.35719 8.84311 9.42392 10.98311 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.011618 B = 0.005785 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.467402 B = 4839.173098 C = 6534.757797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.138 4.138 4 C 0.090 3.910 5 N -0.525 5.525 6 C 0.208 3.792 7 C -0.525 4.525 8 H 0.074 0.926 9 C 0.081 3.919 10 N -0.892 5.892 11 Si 0.874 3.126 12 H -0.269 1.269 13 H -0.285 1.285 14 H -0.268 1.268 15 C 0.554 3.446 16 S -0.626 6.626 17 N -0.647 5.647 18 C 0.099 3.901 19 C -0.032 4.032 20 C -0.166 4.166 21 C 0.087 3.913 22 N -0.479 5.479 23 C 0.084 3.916 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.104 0.896 32 H 0.069 0.931 33 H 0.037 0.963 34 H 0.070 0.930 35 H 0.266 0.734 36 H 0.402 0.598 37 H 0.154 0.846 38 H 0.136 0.864 39 H 0.153 0.847 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.100 -5.983 11.808 19.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.177 4.177 4 C -0.037 4.037 5 N -0.227 5.227 6 C 0.088 3.912 7 C -0.563 4.563 8 H 0.092 0.908 9 C -0.122 4.122 10 N -0.529 5.529 11 Si 0.701 3.299 12 H -0.194 1.194 13 H -0.211 1.211 14 H -0.192 1.192 15 C 0.197 3.803 16 S -0.492 6.492 17 N -0.277 5.277 18 C 0.002 3.998 19 C -0.063 4.063 20 C -0.188 4.188 21 C -0.071 4.071 22 N -0.188 5.188 23 C -0.075 4.075 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.122 0.878 32 H 0.087 0.913 33 H 0.055 0.945 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.242 0.758 37 H 0.172 0.828 38 H 0.154 0.846 39 H 0.171 0.829 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -13.180 -5.348 12.124 18.689 hybrid contribution -0.986 -0.356 -1.501 1.830 sum -14.166 -5.704 10.623 18.603 Atomic orbital electron populations 1.21754 0.95597 1.01593 1.01938 1.21460 0.96123 0.95941 1.02432 1.22073 0.94685 0.97700 1.03261 1.21935 0.94228 0.83262 1.04231 1.47530 1.56668 1.12617 1.05896 1.20354 0.98613 0.95287 0.76906 1.20970 0.94393 1.33659 1.07308 0.90783 1.24721 0.94929 0.95391 0.97184 1.69875 1.14990 1.44569 1.23511 0.86888 0.81106 0.82194 0.79735 1.19388 1.21088 1.19244 1.22285 0.82335 0.94492 0.81190 1.93178 1.64238 0.98858 1.92894 1.42205 1.69614 1.13230 1.02684 1.18450 1.01004 0.94815 0.85531 1.21910 0.94351 0.92811 0.97237 1.21973 1.02219 1.01543 0.93049 1.22671 0.94891 0.90587 0.98937 1.67641 1.17716 1.09420 1.24038 1.22489 0.96059 1.00572 0.88408 0.92667 0.92843 0.92589 0.91333 0.91923 0.91920 0.90657 0.87782 0.91324 0.94482 0.91213 0.92386 0.75774 0.82833 0.84642 0.82933 0.83160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 37.16 0.37 -0.82 16 2 C -0.12 -1.02 5.93 -26.73 -0.16 -1.18 16 3 C -0.14 -1.48 5.54 -26.73 -0.15 -1.63 16 4 C 0.09 1.18 5.22 -4.04 -0.02 1.16 16 5 N -0.53 -9.58 2.46 -177.08 -0.43 -10.01 16 6 C 0.21 4.68 3.99 -5.19 -0.02 4.65 16 7 C -0.52 -14.27 9.94 -34.44 -0.34 -14.61 16 8 H 0.07 2.25 8.06 -52.49 -0.42 1.83 16 9 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 10 N -0.89 -26.94 13.96 55.43 0.77 -26.16 16 11 Si 0.87 20.96 27.47 -169.99 -4.67 16.30 16 12 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 14 H -0.27 -5.94 6.54 56.52 0.37 -5.57 16 15 C 0.55 10.33 7.49 -86.91 -0.65 9.68 16 16 S -0.63 -14.45 24.44 -107.50 -2.63 -17.08 16 17 N -0.65 -9.26 5.22 -11.30 -0.06 -9.32 16 18 C 0.10 1.43 5.94 -83.55 -0.50 0.93 16 19 C -0.03 -0.47 7.98 -39.09 -0.31 -0.78 16 20 C -0.17 -2.03 10.10 -39.47 -0.40 -2.43 16 21 C 0.09 1.05 11.18 -17.53 -0.20 0.85 16 22 N -0.48 -6.60 10.35 -13.09 -0.14 -6.74 16 23 C 0.08 1.13 11.12 -17.33 -0.19 0.94 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.10 1.45 8.07 -51.93 -0.42 1.03 16 32 H 0.07 0.74 6.29 -51.93 -0.33 0.41 16 33 H 0.04 0.79 7.13 -51.93 -0.37 0.42 16 34 H 0.07 1.71 6.01 -51.93 -0.31 1.39 16 35 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.40 4.43 6.52 -40.82 -0.27 4.17 16 37 H 0.15 2.47 6.30 -50.14 -0.32 2.15 16 38 H 0.14 1.31 8.06 -52.48 -0.42 0.89 16 39 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16 40 H 0.15 1.67 8.06 -52.49 -0.42 1.24 16 LS Contribution 342.33 15.07 5.16 5.16 Total: -1.00 -33.98 342.33 -10.49 -44.46 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -5.83 Total: 4.44 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -2.67 Total: -1.05 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: 0.14 Total: -52.23 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.67 Total: 16.30 kcal Atomic # 16 Polarization: -14.45 SS G_CDS: -2.63 Total: -17.08 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.98 -10.49 -44.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199896878.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.621 kcal (2) G-P(sol) polarization free energy of solvation -33.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds