Wall clock time and date at job start Tue Mar 31 2020 07:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47194 * 2 1 4 4 C 1.53004 * 109.47194 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47041 * 179.97438 * 4 3 2 6 6 C 1.46501 * 120.00320 * 270.00040 * 5 4 3 7 7 C 1.50700 * 109.46673 * 270.00421 * 6 5 4 8 8 H 1.07995 * 120.00271 * 359.97438 * 7 6 5 9 9 C 1.37877 * 119.99387 * 180.02562 * 7 6 5 10 10 N 1.31522 * 119.99888 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 120.00354 * 359.97438 * 9 7 6 12 12 H 1.48507 * 109.47060 * 90.00429 * 11 9 7 13 13 H 1.48497 * 109.47282 * 210.00003 * 11 9 7 14 14 H 1.48498 * 109.47082 * 330.00496 * 11 9 7 15 15 C 1.34776 * 119.99800 * 89.99955 * 5 4 3 16 16 S 1.71201 * 120.00035 * 179.97438 * 15 5 4 17 17 N 1.34784 * 120.00345 * 0.02562 * 15 5 4 18 18 C 1.39904 * 120.00101 * 185.51565 * 17 15 5 19 19 C 1.39291 * 120.49272 * 41.31469 * 18 17 15 20 20 C 1.38499 * 118.36326 * 179.97438 * 19 18 17 21 21 C 1.38276 * 119.23771 * 0.25774 * 20 19 18 22 22 N 1.31858 * 120.92035 * 359.49294 * 21 20 19 23 23 C 1.31823 * 121.79378 * 0.49696 * 22 21 20 24 24 H 1.08998 * 109.46963 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46863 * 300.00385 * 1 2 3 26 26 H 1.09002 * 109.46981 * 59.99531 * 1 2 3 27 27 H 1.09004 * 109.47140 * 240.00345 * 2 1 3 28 28 H 1.09003 * 109.47112 * 119.99930 * 2 1 3 29 29 H 1.08997 * 109.47161 * 59.99921 * 3 2 1 30 30 H 1.09003 * 109.47034 * 299.99978 * 3 2 1 31 31 H 1.08997 * 109.47131 * 59.99903 * 4 3 2 32 32 H 1.08997 * 109.46686 * 299.99798 * 4 3 2 33 33 H 1.09000 * 109.46675 * 29.99744 * 6 5 4 34 34 H 1.08994 * 109.46960 * 150.00208 * 6 5 4 35 35 H 0.96999 * 119.99804 * 179.97438 * 10 9 7 36 36 H 0.97005 * 119.99151 * 5.51934 * 17 15 5 37 37 H 1.07998 * 120.81582 * 359.95794 * 19 18 17 38 38 H 1.08004 * 120.38353 * 179.97438 * 20 19 18 39 39 H 1.07994 * 119.53928 * 179.72409 * 21 20 19 40 40 H 1.07995 * 119.66594 * 179.75785 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.3031 3.5137 -1.2690 7 6 5.7266 3.2765 -1.7032 8 1 6.3834 2.6727 -1.0947 9 6 6.1907 3.8313 -2.8770 10 7 7.4331 3.6248 -3.2558 11 14 5.0549 4.8763 -3.9293 12 1 5.1575 6.2967 -3.5082 13 1 5.4491 4.7533 -5.3557 14 1 3.6552 4.4099 -3.7605 15 6 4.2825 3.4597 1.1670 16 16 4.8538 5.0736 1.1663 17 7 4.0579 2.8249 2.3345 18 6 4.1791 3.5193 3.5430 19 6 3.6933 4.8192 3.6630 20 6 3.8361 5.4654 4.8797 21 6 4.4561 4.8066 5.9255 22 7 4.9012 3.5739 5.7810 23 6 4.7852 2.9228 4.6407 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9338 0.9285 -0.8891 32 1 3.9330 0.9288 0.8909 33 1 3.6227 3.1290 -2.0287 34 1 4.1361 4.5829 -1.1393 35 1 7.7595 4.0149 -4.0818 36 1 3.8122 1.8865 2.3368 37 1 3.2171 5.3112 2.8278 38 1 3.4717 6.4738 5.0088 39 1 4.5741 5.3075 6.8750 40 1 5.1655 1.9153 4.5593 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199896878.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:53 Heat of formation + Delta-G solvation = 35.551918 kcal Electronic energy + Delta-G solvation = -21142.432259 eV Core-core repulsion = 18082.718995 eV Total energy + Delta-G solvation = -3059.713265 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.66133 -40.30124 -37.30716 -35.90150 -34.60583 -33.05413 -31.49599 -30.94405 -29.28780 -26.20238 -25.12153 -24.62436 -23.62008 -22.40764 -21.86262 -19.66261 -19.13862 -19.00872 -17.85587 -17.24091 -16.94074 -16.34131 -16.31237 -16.06695 -15.33216 -14.94200 -14.89886 -14.53225 -14.30583 -14.07831 -14.00714 -13.75981 -13.56106 -13.14644 -12.93336 -12.63607 -12.48437 -12.30556 -12.21900 -12.06562 -11.88692 -11.74400 -11.51913 -11.09750 -10.81534 -10.60514 -10.37442 -9.37876 -8.90263 -8.32455 -8.22830 -6.36407 -0.15623 0.35138 0.56614 0.96742 1.32463 1.41522 1.43650 1.55535 2.19877 2.32199 2.89109 3.04636 3.60654 3.66649 3.78574 3.91295 3.97369 4.08858 4.19754 4.21222 4.31867 4.41979 4.56677 4.63533 4.69258 4.74536 4.85338 4.91296 4.99929 5.05885 5.11041 5.23176 5.28521 5.30321 5.38623 5.44089 5.54112 5.61824 5.87706 6.20529 6.26908 6.61980 6.99524 7.24801 8.84769 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.011618 B = 0.005785 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.467402 B = 4839.173098 C = 6534.757797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.128 4.128 4 C 0.083 3.917 5 N -0.527 5.527 6 C 0.220 3.780 7 C -0.519 4.519 8 H 0.029 0.971 9 C 0.021 3.979 10 N -0.943 5.943 11 Si 0.940 3.060 12 H -0.280 1.280 13 H -0.279 1.279 14 H -0.234 1.234 15 C 0.576 3.424 16 S -0.725 6.725 17 N -0.618 5.618 18 C 0.075 3.925 19 C -0.046 4.046 20 C -0.164 4.164 21 C 0.092 3.908 22 N -0.495 5.495 23 C 0.088 3.912 24 H 0.066 0.934 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.267 0.733 36 H 0.422 0.578 37 H 0.135 0.865 38 H 0.160 0.840 39 H 0.188 0.812 40 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.414 -7.193 13.138 22.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.167 4.167 4 C -0.041 4.041 5 N -0.228 5.228 6 C 0.098 3.902 7 C -0.558 4.558 8 H 0.047 0.953 9 C -0.178 4.178 10 N -0.584 5.584 11 Si 0.763 3.237 12 H -0.206 1.206 13 H -0.204 1.204 14 H -0.157 1.157 15 C 0.214 3.786 16 S -0.592 6.592 17 N -0.249 5.249 18 C -0.022 4.022 19 C -0.077 4.077 20 C -0.185 4.185 21 C -0.065 4.065 22 N -0.204 5.204 23 C -0.071 4.071 24 H 0.085 0.915 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.087 0.913 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.117 0.883 32 H 0.115 0.885 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.265 0.735 37 H 0.153 0.847 38 H 0.178 0.822 39 H 0.205 0.795 40 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -15.546 -6.632 13.521 21.644 hybrid contribution -0.252 -0.071 -1.722 1.741 sum -15.799 -6.703 11.799 20.826 Atomic orbital electron populations 1.21752 0.95019 1.02312 1.01791 1.21450 0.96533 0.94171 1.03351 1.21995 0.92328 0.99407 1.02927 1.22315 0.96072 0.80287 1.05450 1.47431 1.56499 1.14336 1.04525 1.19952 0.96018 0.95060 0.79136 1.21136 0.96091 1.32180 1.06399 0.95295 1.25636 0.96427 0.96808 0.98882 1.70030 1.17342 1.46529 1.24451 0.85840 0.80730 0.79357 0.77782 1.20565 1.20392 1.15663 1.21712 0.81549 0.92919 0.82454 1.93342 1.68464 1.03488 1.93925 1.41969 1.67633 1.13842 1.01449 1.18629 1.02712 0.95231 0.85587 1.21910 0.94849 0.93152 0.97770 1.22270 1.01580 1.02511 0.92173 1.23263 0.93125 0.90019 1.00084 1.67739 1.18271 1.10330 1.24072 1.22809 0.95121 1.01402 0.87765 0.91541 0.92615 0.93178 0.91279 0.90212 0.91506 0.91833 0.88332 0.88477 0.92118 0.92876 0.92358 0.73467 0.84749 0.82201 0.79510 0.80982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.91 71.98 0.71 -1.23 16 2 C -0.12 -1.61 5.93 30.60 0.18 -1.43 16 3 C -0.13 -2.41 5.54 30.60 0.17 -2.24 16 4 C 0.08 2.02 5.22 86.38 0.45 2.47 16 5 N -0.53 -18.86 2.46 -714.17 -1.75 -20.62 16 6 C 0.22 9.83 3.99 85.63 0.34 10.17 16 7 C -0.52 -28.92 9.94 25.60 0.25 -28.67 16 8 H 0.03 1.83 8.06 -2.91 -0.02 1.80 16 9 C 0.02 1.21 5.47 84.65 0.46 1.67 16 10 N -0.94 -58.88 13.96 21.45 0.30 -58.58 16 11 Si 0.94 43.49 27.47 68.60 1.88 45.37 16 12 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 13 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 14 H -0.23 -9.43 6.54 99.48 0.65 -8.78 16 15 C 0.58 21.32 7.49 179.05 1.34 22.66 16 16 S -0.72 -34.50 24.44 -56.49 -1.38 -35.88 16 17 N -0.62 -16.83 5.22 -189.68 -0.99 -17.82 16 18 C 0.07 2.06 5.94 38.25 0.23 2.29 16 19 C -0.05 -1.33 7.98 22.59 0.18 -1.15 16 20 C -0.16 -3.74 10.10 22.34 0.23 -3.52 16 21 C 0.09 1.98 11.18 84.70 0.95 2.93 16 22 N -0.49 -12.46 10.35 -195.31 -2.02 -14.48 16 23 C 0.09 2.18 11.12 84.84 0.94 3.13 16 24 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 26 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.10 2.58 8.07 -2.39 -0.02 2.56 16 32 H 0.10 1.79 6.29 -2.39 -0.02 1.78 16 33 H 0.06 2.46 7.13 -2.39 -0.02 2.44 16 34 H 0.05 2.61 6.01 -2.39 -0.01 2.60 16 35 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 36 H 0.42 8.16 6.52 -92.70 -0.60 7.55 16 37 H 0.13 4.43 6.30 -4.41 -0.03 4.40 16 38 H 0.16 2.77 8.06 -2.91 -0.02 2.74 16 39 H 0.19 2.61 8.06 -2.91 -0.02 2.59 16 40 H 0.17 3.34 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -78.01 342.33 2.84 -75.17 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: 0.37 Total: 19.77 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: 6.44 Total: 7.07 kcal Atomic # 7 Polarization: -107.04 SS G_CDS: -4.47 Total: -111.50 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 1.88 Total: 45.37 kcal Atomic # 16 Polarization: -34.50 SS G_CDS: -1.38 Total: -35.88 kcal Total: -78.01 2.84 -75.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199896878.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.720 kcal (2) G-P(sol) polarization free energy of solvation -78.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds