Wall clock time and date at job start Tue Mar 31 2020 07:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47481 * 2 1 4 4 C 1.52997 * 109.47481 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47097 * 179.97438 * 4 3 2 6 6 C 1.36939 * 120.00159 * 275.11606 * 5 4 3 7 7 H 1.08002 * 119.99783 * 322.00393 * 6 5 4 8 8 C 1.38815 * 120.00280 * 142.00405 * 6 5 4 9 9 N 1.31619 * 119.99645 * 340.05740 * 8 6 5 10 10 Si 1.86800 * 120.00268 * 160.06259 * 8 6 5 11 11 H 1.48507 * 109.46893 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47396 * 119.99949 * 10 8 6 13 13 H 1.48501 * 109.46887 * 240.00203 * 10 8 6 14 14 C 1.46500 * 120.00234 * 95.11443 * 5 4 3 15 15 C 1.50703 * 109.47026 * 89.99895 * 14 5 4 16 16 C 1.38293 * 119.87624 * 259.73536 * 15 14 5 17 17 C 1.37956 * 120.21373 * 179.72611 * 16 15 14 18 18 C 1.39656 * 119.95497 * 0.56391 * 17 16 15 19 19 C 1.47746 * 120.11993 * 179.73070 * 18 17 16 20 20 O 1.21465 * 119.99978 * 179.97438 * 19 18 17 21 21 O 1.34711 * 119.99806 * 359.97438 * 19 18 17 22 22 C 1.39536 * 119.75629 * 359.70466 * 18 17 16 23 23 C 1.38483 * 119.78899 * 0.02562 * 22 18 17 24 24 O 1.35911 * 119.98078 * 179.97438 * 23 22 18 25 25 H 1.08998 * 109.46969 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47064 * 299.99622 * 1 2 3 27 27 H 1.08993 * 109.46833 * 60.00082 * 1 2 3 28 28 H 1.09002 * 109.47277 * 239.99625 * 2 1 3 29 29 H 1.09002 * 109.47405 * 119.99831 * 2 1 3 30 30 H 1.09002 * 109.47171 * 59.99560 * 3 2 1 31 31 H 1.09002 * 109.46663 * 300.00285 * 3 2 1 32 32 H 1.09003 * 109.47064 * 60.00378 * 4 3 2 33 33 H 1.08993 * 109.47342 * 300.00058 * 4 3 2 34 34 H 0.96997 * 119.99972 * 179.97438 * 9 8 6 35 35 H 1.08996 * 109.47111 * 209.99874 * 14 5 4 36 36 H 1.08995 * 109.47227 * 330.00441 * 14 5 4 37 37 H 1.07997 * 119.89355 * 359.97045 * 16 15 14 38 38 H 1.07993 * 120.01905 * 180.26990 * 17 16 15 39 39 H 0.96699 * 116.99825 * 180.02562 * 21 19 18 40 40 H 1.08004 * 120.10106 * 180.02562 * 22 18 17 41 41 H 0.96695 * 114.00187 * 270.02625 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0583 2.8236 0.0000 6 6 4.1874 3.5038 -1.1815 7 1 4.5354 2.9896 -2.0653 8 6 3.8709 4.8539 -1.2434 9 7 3.0964 5.3910 -0.3247 10 14 4.5441 5.9085 -2.6305 11 1 5.3829 5.0719 -3.5260 12 1 3.4166 6.4865 -3.4049 13 1 5.3686 7.0055 -2.0629 14 6 4.4086 3.4774 1.2634 15 6 5.8630 3.2297 1.5708 16 6 6.2178 2.2494 2.4795 17 6 7.5473 2.0130 2.7619 18 6 8.5387 2.7732 2.1376 19 6 9.9634 2.5271 2.4418 20 8 10.8239 3.1892 1.8973 21 8 10.3081 1.5683 3.3231 22 6 8.1787 3.7656 1.2252 23 6 6.8413 3.9904 0.9452 24 8 6.4862 4.9564 0.0576 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9562 -0.8900 32 1 3.9337 0.9285 -0.8892 33 1 3.9330 0.9288 0.8908 34 1 2.8756 6.3345 -0.3676 35 1 4.2327 4.5497 1.1787 36 1 3.7934 3.0705 2.0659 37 1 5.4518 1.6644 2.9667 38 1 7.8210 1.2438 3.4687 39 1 11.2525 1.4444 3.4900 40 1 8.9408 4.3565 0.7389 41 1 6.3455 5.8255 0.4574 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231453336.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:44 Heat of formation + Delta-G solvation = -99.412514 kcal Electronic energy + Delta-G solvation = -23838.209564 eV Core-core repulsion = 20297.598181 eV Total energy + Delta-G solvation = -3540.611384 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.24234 -38.97441 -36.25431 -36.00919 -35.86779 -34.04204 -31.74693 -30.85504 -29.46549 -27.95322 -26.26053 -24.14278 -23.01069 -22.13707 -21.12312 -20.50796 -19.88221 -18.33848 -17.54930 -16.82473 -16.16529 -15.50477 -15.28689 -14.98614 -14.81382 -14.45899 -14.22668 -13.79873 -13.51089 -13.38384 -13.24546 -12.93690 -12.31522 -12.03930 -11.83197 -11.70780 -11.46193 -11.44397 -11.04893 -10.96877 -10.76877 -10.63495 -10.57070 -10.43594 -10.26598 -9.97287 -9.95537 -9.75935 -9.67809 -8.53419 -8.48122 -8.07945 -6.63041 -5.82449 -3.34643 1.01561 1.72304 2.77095 3.11601 3.38763 3.46652 3.54731 4.07263 4.52151 4.91655 5.12557 5.29035 5.31827 5.37362 5.45210 5.46602 5.63777 5.69333 5.73448 5.89696 6.03826 6.20273 6.22466 6.25691 6.36160 6.39193 6.41951 6.45773 6.51903 6.59179 6.61038 6.68217 6.79495 7.05931 7.11405 7.19706 7.27101 7.53120 7.81699 7.98162 8.40780 8.49235 9.13245 9.76869 10.31706 11.18574 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.012701 B = 0.005512 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.976615 B = 5079.051997 C = 6849.889181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.130 4.130 4 C 0.149 3.851 5 N -0.568 5.568 6 C -0.234 4.234 7 H 0.056 0.944 8 C 0.031 3.969 9 N -0.888 5.888 10 Si 0.902 3.098 11 H -0.279 1.279 12 H -0.298 1.298 13 H -0.287 1.287 14 C 0.173 3.827 15 C -0.065 4.065 16 C -0.129 4.129 17 C -0.076 4.076 18 C -0.146 4.146 19 C 0.531 3.469 20 O -0.525 6.525 21 O -0.515 6.515 22 C -0.087 4.087 23 C 0.115 3.885 24 O -0.462 6.462 25 H 0.043 0.957 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.038 0.962 33 H 0.034 0.966 34 H 0.253 0.747 35 H 0.109 0.891 36 H 0.036 0.964 37 H 0.124 0.876 38 H 0.128 0.872 39 H 0.408 0.592 40 H 0.132 0.868 41 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.427 -6.502 7.706 11.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.170 4.170 4 C 0.023 3.977 5 N -0.286 5.286 6 C -0.363 4.363 7 H 0.073 0.927 8 C -0.169 4.169 9 N -0.530 5.530 10 Si 0.733 3.267 11 H -0.204 1.204 12 H -0.226 1.226 13 H -0.213 1.213 14 C 0.047 3.953 15 C -0.070 4.070 16 C -0.148 4.148 17 C -0.094 4.094 18 C -0.148 4.148 19 C 0.377 3.623 20 O -0.416 6.416 21 O -0.326 6.326 22 C -0.106 4.106 23 C 0.068 3.932 24 O -0.270 6.270 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.126 0.874 36 H 0.054 0.946 37 H 0.142 0.858 38 H 0.146 0.854 39 H 0.266 0.734 40 H 0.150 0.850 41 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 4.160 -6.560 7.034 10.480 hybrid contribution 1.078 0.870 -0.310 1.419 sum 5.238 -5.691 6.724 10.249 Atomic orbital electron populations 1.21754 0.96769 1.00382 1.01700 1.21531 0.95125 0.98632 1.00844 1.22105 0.98694 0.93892 1.02328 1.20942 0.91694 0.86884 0.98206 1.43738 1.71565 1.10278 1.02987 1.18955 1.36713 0.92375 0.88275 0.92664 1.24968 0.96084 0.98511 0.97364 1.69975 1.34725 1.12279 1.36052 0.86256 0.78088 0.80417 0.81931 1.20402 1.22602 1.21307 1.20047 0.84900 1.02991 0.87313 1.22046 1.00963 0.93233 0.90736 1.20947 0.95378 0.98830 0.99668 1.21263 0.92448 0.97643 0.98056 1.18573 0.88714 1.02975 1.04561 1.21059 0.90057 0.76073 0.75141 1.90852 1.52055 1.48030 1.50620 1.84583 1.33880 1.54589 1.59571 1.21474 0.96578 0.97021 0.95563 1.18075 0.89790 0.93328 0.91961 1.85116 1.90131 1.19693 1.32038 0.93745 0.93094 0.92923 0.92750 0.93002 0.92910 0.91727 0.94361 0.94724 0.93685 0.87355 0.94590 0.85780 0.85411 0.73393 0.85032 0.76961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.91 37.16 0.37 -1.62 16 2 C -0.12 -1.83 5.93 -26.73 -0.16 -1.99 16 3 C -0.13 -2.43 5.51 -26.73 -0.15 -2.58 16 4 C 0.15 2.97 5.68 -4.04 -0.02 2.94 16 5 N -0.57 -13.06 2.42 -174.61 -0.42 -13.48 16 6 C -0.23 -6.02 8.62 -15.06 -0.13 -6.15 16 7 H 0.06 1.50 7.91 -52.49 -0.41 1.09 16 8 C 0.03 0.79 3.84 -17.43 -0.07 0.72 16 9 N -0.89 -23.30 11.41 55.49 0.63 -22.67 16 10 Si 0.90 21.34 28.83 -169.99 -4.90 16.44 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 12 H -0.30 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 14 C 0.17 3.69 5.07 -5.19 -0.03 3.66 16 15 C -0.06 -1.23 5.48 -104.39 -0.57 -1.80 16 16 C -0.13 -2.07 9.64 -39.66 -0.38 -2.46 16 17 C -0.08 -1.12 9.61 -39.16 -0.38 -1.50 16 18 C -0.15 -2.37 5.87 -105.00 -0.62 -2.98 16 19 C 0.53 8.00 8.27 34.62 0.29 8.28 16 20 O -0.53 -9.24 17.13 -19.24 -0.33 -9.57 16 21 O -0.51 -5.74 12.68 -40.52 -0.51 -6.25 16 22 C -0.09 -1.54 9.53 -39.01 -0.37 -1.92 16 23 C 0.11 2.19 6.67 -39.28 -0.26 1.93 16 24 O -0.46 -9.35 9.82 -19.46 -0.19 -9.54 16 25 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.04 0.78 8.08 -51.93 -0.42 0.36 16 33 H 0.03 0.63 8.03 -51.93 -0.42 0.21 16 34 H 0.25 6.47 8.31 -40.82 -0.34 6.13 16 35 H 0.11 2.58 5.19 -51.93 -0.27 2.31 16 36 H 0.04 0.72 7.92 -51.93 -0.41 0.31 16 37 H 0.12 1.75 8.03 -52.49 -0.42 1.33 16 38 H 0.13 1.59 7.61 -52.49 -0.40 1.19 16 39 H 0.41 2.54 9.11 45.56 0.42 2.96 16 40 H 0.13 2.29 7.65 -52.48 -0.40 1.89 16 41 H 0.38 6.38 9.06 45.56 0.41 6.79 16 LS Contribution 347.14 15.07 5.23 5.23 Total: -1.00 -29.87 347.14 -7.39 -37.27 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -4.42 Total: 8.02 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -2.48 Total: -5.45 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: 0.21 Total: -36.15 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -1.03 Total: -25.35 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.90 Total: 16.44 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.87 -7.39 -37.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231453336.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.147 kcal (2) G-P(sol) polarization free energy of solvation -29.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds