Wall clock time and date at job start Tue Mar 31 2020 07:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47481 * 2 1 4 4 C 1.52997 * 109.47481 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47097 * 179.97438 * 4 3 2 6 6 C 1.36939 * 120.00159 * 275.11606 * 5 4 3 7 7 H 1.08002 * 119.99783 * 322.00393 * 6 5 4 8 8 C 1.38815 * 120.00280 * 142.00405 * 6 5 4 9 9 N 1.31619 * 119.99645 * 340.05740 * 8 6 5 10 10 Si 1.86800 * 120.00268 * 160.06259 * 8 6 5 11 11 H 1.48507 * 109.46893 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47396 * 119.99949 * 10 8 6 13 13 H 1.48501 * 109.46887 * 240.00203 * 10 8 6 14 14 C 1.46500 * 120.00234 * 95.11443 * 5 4 3 15 15 C 1.50703 * 109.47026 * 89.99895 * 14 5 4 16 16 C 1.38293 * 119.87624 * 259.73536 * 15 14 5 17 17 C 1.37956 * 120.21373 * 179.72611 * 16 15 14 18 18 C 1.39656 * 119.95497 * 0.56391 * 17 16 15 19 19 C 1.47746 * 120.11993 * 179.73070 * 18 17 16 20 20 O 1.21465 * 119.99978 * 179.97438 * 19 18 17 21 21 O 1.34711 * 119.99806 * 359.97438 * 19 18 17 22 22 C 1.39536 * 119.75629 * 359.70466 * 18 17 16 23 23 C 1.38483 * 119.78899 * 0.02562 * 22 18 17 24 24 O 1.35911 * 119.98078 * 179.97438 * 23 22 18 25 25 H 1.08998 * 109.46969 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47064 * 299.99622 * 1 2 3 27 27 H 1.08993 * 109.46833 * 60.00082 * 1 2 3 28 28 H 1.09002 * 109.47277 * 239.99625 * 2 1 3 29 29 H 1.09002 * 109.47405 * 119.99831 * 2 1 3 30 30 H 1.09002 * 109.47171 * 59.99560 * 3 2 1 31 31 H 1.09002 * 109.46663 * 300.00285 * 3 2 1 32 32 H 1.09003 * 109.47064 * 60.00378 * 4 3 2 33 33 H 1.08993 * 109.47342 * 300.00058 * 4 3 2 34 34 H 0.96997 * 119.99972 * 179.97438 * 9 8 6 35 35 H 1.08996 * 109.47111 * 209.99874 * 14 5 4 36 36 H 1.08995 * 109.47227 * 330.00441 * 14 5 4 37 37 H 1.07997 * 119.89355 * 359.97045 * 16 15 14 38 38 H 1.07993 * 120.01905 * 180.26990 * 17 16 15 39 39 H 0.96699 * 116.99825 * 180.02562 * 21 19 18 40 40 H 1.08004 * 120.10106 * 180.02562 * 22 18 17 41 41 H 0.96695 * 114.00187 * 270.02625 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0583 2.8236 0.0000 6 6 4.1874 3.5038 -1.1815 7 1 4.5354 2.9896 -2.0653 8 6 3.8709 4.8539 -1.2434 9 7 3.0964 5.3910 -0.3247 10 14 4.5441 5.9085 -2.6305 11 1 5.3829 5.0719 -3.5260 12 1 3.4166 6.4865 -3.4049 13 1 5.3686 7.0055 -2.0629 14 6 4.4086 3.4774 1.2634 15 6 5.8630 3.2297 1.5708 16 6 6.2178 2.2494 2.4795 17 6 7.5473 2.0130 2.7619 18 6 8.5387 2.7732 2.1376 19 6 9.9634 2.5271 2.4418 20 8 10.8239 3.1892 1.8973 21 8 10.3081 1.5683 3.3231 22 6 8.1787 3.7656 1.2252 23 6 6.8413 3.9904 0.9452 24 8 6.4862 4.9564 0.0576 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9562 -0.8900 32 1 3.9337 0.9285 -0.8892 33 1 3.9330 0.9288 0.8908 34 1 2.8756 6.3345 -0.3676 35 1 4.2327 4.5497 1.1787 36 1 3.7934 3.0705 2.0659 37 1 5.4518 1.6644 2.9667 38 1 7.8210 1.2438 3.4687 39 1 11.2525 1.4444 3.4900 40 1 8.9408 4.3565 0.7389 41 1 6.3455 5.8255 0.4574 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231453336.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:44 Heat of formation + Delta-G solvation = -118.169475 kcal Electronic energy + Delta-G solvation = -23839.022927 eV Core-core repulsion = 20297.598181 eV Total energy + Delta-G solvation = -3541.424747 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.46692 -40.32548 -37.84306 -37.33393 -37.07925 -35.48168 -33.45568 -32.36782 -30.82836 -29.40846 -27.87290 -25.74643 -24.35141 -23.50804 -22.49361 -21.83925 -21.43808 -19.61737 -18.79651 -18.58382 -17.51149 -16.86303 -16.66510 -16.49430 -16.26247 -16.04373 -15.63779 -15.34886 -15.14751 -14.66002 -14.62418 -14.16509 -13.76155 -13.42409 -13.22418 -13.17055 -13.00130 -12.66555 -12.59308 -12.56295 -12.48054 -12.15296 -11.94682 -11.83656 -11.78091 -11.69978 -11.52253 -11.24178 -11.21489 -10.40213 -9.87446 -9.48035 -8.46949 -7.74561 -5.31502 -0.28159 0.38919 1.45602 1.51281 1.53317 1.60663 2.04422 2.59301 2.76065 3.41356 3.52915 3.82322 3.89124 4.09984 4.20048 4.22184 4.25115 4.36570 4.48859 4.58924 4.61634 4.83227 4.89094 4.92584 5.01500 5.08236 5.10719 5.14308 5.22788 5.25641 5.40013 5.43851 5.56102 5.58314 5.62382 5.69122 5.79844 5.83494 5.91077 6.57405 6.97275 7.00419 7.27779 7.93957 8.44297 9.23195 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.012701 B = 0.005512 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.976615 B = 5079.051997 C = 6849.889181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C -0.118 4.118 4 C 0.146 3.854 5 N -0.584 5.584 6 C -0.241 4.241 7 H 0.032 0.968 8 C 0.008 3.992 9 N -0.909 5.909 10 Si 0.940 3.060 11 H -0.291 1.291 12 H -0.304 1.304 13 H -0.279 1.279 14 C 0.180 3.820 15 C -0.081 4.081 16 C -0.120 4.120 17 C -0.059 4.059 18 C -0.145 4.145 19 C 0.540 3.460 20 O -0.554 6.554 21 O -0.498 6.498 22 C -0.097 4.097 23 C 0.099 3.901 24 O -0.483 6.483 25 H 0.068 0.932 26 H 0.050 0.950 27 H 0.041 0.959 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.039 0.961 31 H 0.028 0.972 32 H 0.029 0.971 33 H 0.059 0.941 34 H 0.251 0.749 35 H 0.082 0.918 36 H 0.045 0.955 37 H 0.151 0.849 38 H 0.165 0.835 39 H 0.433 0.567 40 H 0.127 0.873 41 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.425 -8.795 9.844 14.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C -0.158 4.158 4 C 0.021 3.979 5 N -0.303 5.303 6 C -0.371 4.371 7 H 0.049 0.951 8 C -0.190 4.190 9 N -0.553 5.553 10 Si 0.771 3.229 11 H -0.217 1.217 12 H -0.232 1.232 13 H -0.205 1.205 14 C 0.054 3.946 15 C -0.085 4.085 16 C -0.139 4.139 17 C -0.077 4.077 18 C -0.147 4.147 19 C 0.387 3.613 20 O -0.447 6.447 21 O -0.311 6.311 22 C -0.116 4.116 23 C 0.053 3.947 24 O -0.293 6.293 25 H 0.087 0.913 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.058 0.942 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.077 0.923 34 H 0.060 0.940 35 H 0.099 0.901 36 H 0.063 0.937 37 H 0.168 0.832 38 H 0.182 0.818 39 H 0.295 0.705 40 H 0.145 0.855 41 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 5.200 -8.879 9.214 13.812 hybrid contribution 0.927 1.479 -0.833 1.934 sum 6.127 -7.400 8.380 12.749 Atomic orbital electron populations 1.21737 0.95604 1.01855 1.01249 1.21465 0.96132 0.95786 1.01979 1.21931 0.97882 0.96149 0.99836 1.21043 0.92343 0.85680 0.98826 1.43853 1.72802 1.11038 1.02557 1.18811 1.36609 0.92724 0.88940 0.95081 1.25197 0.96436 0.98921 0.98413 1.70037 1.36059 1.12100 1.37141 0.85699 0.77262 0.79564 0.80387 1.21681 1.23172 1.20523 1.19830 0.86697 1.01267 0.86768 1.21892 0.99316 0.94744 0.92527 1.21205 0.96769 0.97602 0.98294 1.21587 0.91321 0.97341 0.97426 1.18827 0.90179 1.02096 1.03577 1.20770 0.89152 0.76219 0.75177 1.90858 1.52671 1.49311 1.51882 1.84506 1.36337 1.52559 1.57737 1.21452 0.95771 0.97962 0.96455 1.18276 0.90592 0.93572 0.92223 1.85051 1.90377 1.20572 1.33285 0.91263 0.93088 0.93931 0.92336 0.91037 0.94173 0.95354 0.95255 0.92310 0.93992 0.90079 0.93694 0.83172 0.81775 0.70468 0.85518 0.76019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 9.91 71.98 0.71 -2.96 16 2 C -0.12 -3.23 5.93 30.59 0.18 -3.04 16 3 C -0.12 -4.41 5.51 30.59 0.17 -4.24 16 4 C 0.15 5.79 5.68 86.38 0.49 6.28 16 5 N -0.58 -27.22 2.42 -706.36 -1.71 -28.93 16 6 C -0.24 -12.81 8.62 84.03 0.72 -12.09 16 7 H 0.03 1.78 7.91 -2.91 -0.02 1.76 16 8 C 0.01 0.44 3.84 84.86 0.33 0.77 16 9 N -0.91 -49.23 11.41 21.65 0.25 -48.98 16 10 Si 0.94 45.16 28.83 68.60 1.98 47.14 16 11 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 12 H -0.30 -14.72 7.11 99.48 0.71 -14.02 16 13 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 14 C 0.18 7.68 5.07 85.63 0.43 8.11 16 15 C -0.08 -2.98 5.48 -19.71 -0.11 -3.09 16 16 C -0.12 -3.46 9.64 22.22 0.21 -3.25 16 17 C -0.06 -1.50 9.61 22.55 0.22 -1.28 16 18 C -0.15 -4.31 5.87 -20.11 -0.12 -4.43 16 19 C 0.54 14.60 8.27 70.34 0.58 15.18 16 20 O -0.55 -18.42 17.13 19.95 0.34 -18.07 16 21 O -0.50 -8.80 12.68 -56.21 -0.71 -9.51 16 22 C -0.10 -3.38 9.53 22.64 0.22 -3.16 16 23 C 0.10 3.79 6.67 22.47 0.15 3.94 16 24 O -0.48 -20.18 9.82 -92.55 -0.91 -21.09 16 25 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.03 1.19 8.08 -2.39 -0.02 1.17 16 33 H 0.06 2.01 8.03 -2.39 -0.02 1.99 16 34 H 0.25 13.21 8.31 -92.71 -0.77 12.44 16 35 H 0.08 3.96 5.19 -2.39 -0.01 3.95 16 36 H 0.04 1.77 7.92 -2.39 -0.02 1.75 16 37 H 0.15 3.56 8.03 -2.91 -0.02 3.54 16 38 H 0.16 3.07 7.61 -2.91 -0.02 3.05 16 39 H 0.43 3.39 9.11 -74.06 -0.67 2.72 16 40 H 0.13 4.45 7.65 -2.91 -0.02 4.43 16 41 H 0.38 13.72 9.06 -74.06 -0.67 13.05 16 Total: -1.00 -66.14 347.14 3.14 -63.00 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: -0.29 Total: 19.70 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: 4.19 Total: -3.26 kcal Atomic # 7 Polarization: -76.45 SS G_CDS: -1.46 Total: -77.91 kcal Atomic # 8 Polarization: -47.39 SS G_CDS: -1.28 Total: -48.67 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.98 Total: 47.14 kcal Total: -66.14 3.14 -63.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231453336.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.167 kcal (2) G-P(sol) polarization free energy of solvation -66.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds