Wall clock time and date at job start Tue Mar 31 2020 07:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47181 * 2 1 4 4 C 1.53003 * 109.47181 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47245 * 180.02562 * 4 3 2 6 6 C 1.36935 * 119.99727 * 263.67383 * 5 4 3 7 7 H 1.08009 * 119.99985 * 189.80899 * 6 5 4 8 8 C 1.38805 * 120.00168 * 9.81099 * 6 5 4 9 9 N 1.31615 * 120.00242 * 24.02731 * 8 6 5 10 10 Si 1.86807 * 119.99807 * 204.03103 * 8 6 5 11 11 H 1.48497 * 109.46981 * 84.99070 * 10 8 6 12 12 H 1.48503 * 109.46858 * 204.98818 * 10 8 6 13 13 H 1.48498 * 109.47091 * 324.98814 * 10 8 6 14 14 C 1.46505 * 120.00365 * 83.67378 * 5 4 3 15 15 C 1.50702 * 109.46942 * 270.00480 * 14 5 4 16 16 C 1.37697 * 119.95507 * 104.72694 * 15 14 5 17 17 C 1.39775 * 119.89986 * 179.75060 * 16 15 14 18 18 C 1.47476 * 120.08657 * 180.24104 * 17 16 15 19 19 O 1.21497 * 120.00148 * 0.29976 * 18 17 16 20 20 O 1.34747 * 119.99778 * 180.28935 * 18 17 16 21 21 C 1.39811 * 119.82008 * 0.53971 * 17 16 15 22 22 C 1.37657 * 119.90050 * 359.70686 * 21 17 16 23 23 C 1.38992 * 119.94677 * 284.99230 * 15 14 5 24 24 O 1.35702 * 119.91229 * 0.02562 * 23 15 14 25 25 H 1.08996 * 109.47314 * 299.99939 * 1 2 3 26 26 H 1.09002 * 109.47123 * 60.00188 * 1 2 3 27 27 H 1.09004 * 109.47493 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46983 * 239.99257 * 2 1 3 29 29 H 1.09002 * 109.46618 * 119.99966 * 2 1 3 30 30 H 1.09004 * 109.47477 * 60.00202 * 3 2 1 31 31 H 1.09002 * 109.46938 * 299.99925 * 3 2 1 32 32 H 1.08994 * 109.46855 * 59.99823 * 4 3 2 33 33 H 1.09002 * 109.46618 * 299.99966 * 4 3 2 34 34 H 0.97000 * 120.00090 * 179.97438 * 9 8 6 35 35 H 1.09003 * 109.46720 * 29.99686 * 14 5 4 36 36 H 1.08997 * 109.47120 * 149.99905 * 14 5 4 37 37 H 1.08000 * 120.04662 * 359.97438 * 16 15 14 38 38 H 0.96700 * 117.00216 * 180.02562 * 20 18 17 39 39 H 1.07997 * 120.04915 * 179.69034 * 21 17 16 40 40 H 1.08004 * 119.94896 * 179.97438 * 22 21 17 41 41 H 0.96704 * 113.99685 * 89.99673 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0584 2.8236 0.0013 6 6 4.4103 3.4258 -1.1771 7 1 4.9165 4.3799 -1.1659 8 6 4.1166 2.8102 -2.3860 9 7 3.1313 1.9406 -2.4594 10 14 5.1197 3.2160 -3.9088 11 1 6.3401 2.3704 -3.9373 12 1 4.3059 2.9517 -5.1225 13 1 5.5104 4.6483 -3.8770 14 6 4.1703 3.5605 1.2625 15 6 2.8772 4.2839 1.5380 16 6 2.0107 3.8032 2.4941 17 6 0.8141 4.4779 2.7524 18 6 -0.1145 3.9697 3.7791 19 8 0.1627 2.9663 4.4057 20 8 -1.2702 4.6183 4.0226 21 6 0.4972 5.6324 2.0303 22 6 1.3668 6.1033 1.0726 23 6 2.5586 5.4322 0.8228 24 8 3.4126 5.8993 -0.1227 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5140 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9562 -0.8900 32 1 3.9337 0.9285 -0.8891 33 1 3.9329 0.9287 0.8909 34 1 2.9258 1.5107 -3.3043 35 1 4.3761 2.8625 2.0741 36 1 4.9828 4.2834 1.1901 37 1 2.2569 2.9082 3.0461 38 1 -1.8464 4.2476 4.7049 39 1 -0.4287 6.1539 2.2233 40 1 1.1225 6.9948 0.5141 41 1 3.2540 5.5418 -1.0071 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231565273.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:46 Heat of formation + Delta-G solvation = -94.386183 kcal Electronic energy + Delta-G solvation = -24618.853737 eV Core-core repulsion = 21078.460311 eV Total energy + Delta-G solvation = -3540.393426 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.25617 -39.09201 -36.23878 -36.14914 -35.81875 -33.53614 -32.20556 -30.32683 -29.86969 -28.02489 -25.63573 -24.07152 -23.65559 -21.78527 -21.24645 -20.19695 -19.85389 -17.97690 -17.65946 -16.97711 -16.64797 -15.49673 -15.34140 -15.15363 -14.65098 -14.19162 -14.17187 -13.58188 -13.31708 -13.28574 -13.21897 -12.82796 -12.21179 -11.91421 -11.83634 -11.56454 -11.49784 -11.46603 -11.37329 -10.99625 -10.75056 -10.54290 -10.44449 -10.19990 -10.11451 -9.96374 -9.79992 -9.70692 -9.27357 -8.57154 -8.35884 -8.14987 -6.96885 -5.85803 -3.18487 0.97299 1.71780 2.74584 3.16234 3.32934 3.41448 3.43429 4.00093 4.43132 4.81914 5.07732 5.17291 5.28323 5.39570 5.50785 5.61617 5.79540 5.83009 5.93532 6.02965 6.04673 6.23894 6.34703 6.43718 6.47240 6.56114 6.56787 6.58719 6.68617 6.74867 6.79691 6.93566 6.99987 7.10148 7.20860 7.27539 7.62257 7.75905 8.00984 8.08832 8.26784 8.29651 9.14881 9.77046 10.23817 11.15344 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015491 B = 0.006126 C = 0.004965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.022667 B = 4569.816337 C = 5638.614104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.114 4.114 3 C -0.122 4.122 4 C 0.171 3.829 5 N -0.587 5.587 6 C -0.259 4.259 7 H 0.083 0.917 8 C 0.000 4.000 9 N -0.886 5.886 10 Si 0.895 3.105 11 H -0.289 1.289 12 H -0.294 1.294 13 H -0.280 1.280 14 C 0.185 3.815 15 C -0.122 4.122 16 C -0.032 4.032 17 C -0.156 4.156 18 C 0.530 3.470 19 O -0.521 6.521 20 O -0.516 6.516 21 C -0.058 4.058 22 C -0.174 4.174 23 C 0.180 3.820 24 O -0.499 6.499 25 H 0.042 0.958 26 H 0.050 0.950 27 H 0.038 0.962 28 H 0.057 0.943 29 H 0.037 0.963 30 H 0.023 0.977 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.002 0.998 34 H 0.253 0.747 35 H 0.050 0.950 36 H 0.064 0.936 37 H 0.131 0.869 38 H 0.408 0.592 39 H 0.131 0.869 40 H 0.128 0.872 41 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.021 4.048 7.602 10.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.153 4.153 3 C -0.162 4.162 4 C 0.046 3.954 5 N -0.306 5.306 6 C -0.388 4.388 7 H 0.100 0.900 8 C -0.198 4.198 9 N -0.530 5.530 10 Si 0.725 3.275 11 H -0.216 1.216 12 H -0.221 1.221 13 H -0.206 1.206 14 C 0.058 3.942 15 C -0.126 4.126 16 C -0.052 4.052 17 C -0.157 4.157 18 C 0.376 3.624 19 O -0.411 6.411 20 O -0.328 6.328 21 C -0.077 4.077 22 C -0.193 4.193 23 C 0.134 3.866 24 O -0.315 6.315 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.056 0.944 30 H 0.042 0.958 31 H 0.115 0.885 32 H 0.106 0.894 33 H 0.021 0.979 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.149 0.851 38 H 0.266 0.734 39 H 0.149 0.851 40 H 0.146 0.854 41 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -5.451 4.138 7.715 10.313 hybrid contribution -0.434 -0.376 -0.868 1.041 sum -5.885 3.762 6.847 9.782 Atomic orbital electron populations 1.21720 0.97594 0.99772 1.01033 1.21396 0.94231 0.99521 1.00106 1.22221 0.98518 0.93898 1.01524 1.20888 0.92120 0.84149 0.98268 1.44338 1.74823 1.09861 1.01554 1.19415 1.30917 1.05169 0.83291 0.89951 1.24808 0.97648 0.99988 0.97402 1.70152 1.26346 1.31633 1.24904 0.86418 0.80320 0.78018 0.82698 1.21598 1.22092 1.20602 1.19844 0.91097 0.93830 0.89457 1.21529 1.01392 0.94207 0.95470 1.20964 0.91099 0.97902 0.95215 1.18904 0.96141 1.00031 1.00612 1.20996 0.79557 0.80518 0.81328 1.90870 1.75470 1.25339 1.49405 1.84587 1.31903 1.57347 1.58952 1.21066 0.98703 0.94219 0.93728 1.21352 0.94263 1.02380 1.01278 1.18595 0.87526 0.90203 0.90245 1.84526 1.55555 1.69751 1.21679 0.93875 0.93065 0.94286 0.92418 0.94371 0.95800 0.88455 0.89424 0.97942 0.93658 0.93206 0.91793 0.85070 0.73385 0.85109 0.85393 0.72810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.91 37.16 0.37 -2.10 16 2 C -0.11 -2.18 5.93 -26.73 -0.16 -2.34 16 3 C -0.12 -2.63 4.86 -26.73 -0.13 -2.76 16 4 C 0.17 3.84 4.91 -4.04 -0.02 3.82 16 5 N -0.59 -13.11 2.53 -174.61 -0.44 -13.55 16 6 C -0.26 -6.14 7.67 -15.06 -0.12 -6.26 16 7 H 0.08 1.93 6.73 -52.48 -0.35 1.57 16 8 C 0.00 0.00 4.90 -17.43 -0.09 -0.08 16 9 N -0.89 -22.46 8.55 55.49 0.47 -21.98 16 10 Si 0.90 19.96 29.62 -169.99 -5.03 14.93 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 14 C 0.19 3.62 5.52 -5.19 -0.03 3.59 16 15 C -0.12 -2.25 4.90 -104.54 -0.51 -2.76 16 16 C -0.03 -0.57 7.54 -39.20 -0.30 -0.87 16 17 C -0.16 -2.52 5.87 -104.97 -0.62 -3.14 16 18 C 0.53 8.08 8.26 34.49 0.29 8.36 16 19 O -0.52 -9.24 17.12 -19.26 -0.33 -9.57 16 20 O -0.52 -5.86 12.67 -40.62 -0.51 -6.37 16 21 C -0.06 -0.86 9.61 -39.21 -0.38 -1.24 16 22 C -0.17 -2.71 9.97 -39.50 -0.39 -3.10 16 23 C 0.18 3.24 6.67 -39.01 -0.26 2.98 16 24 O -0.50 -9.16 11.47 -18.81 -0.22 -9.38 16 25 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.02 0.51 5.89 -51.93 -0.31 0.20 16 31 H 0.10 2.41 6.26 -51.93 -0.33 2.08 16 32 H 0.09 2.20 5.90 -51.93 -0.31 1.90 16 33 H 0.00 0.05 7.98 -51.93 -0.41 -0.36 16 34 H 0.25 6.42 8.31 -40.82 -0.34 6.08 16 35 H 0.05 0.91 7.76 -51.93 -0.40 0.51 16 36 H 0.06 1.25 7.88 -51.93 -0.41 0.84 16 37 H 0.13 2.32 7.58 -52.49 -0.40 1.92 16 38 H 0.41 2.66 9.11 45.56 0.42 3.08 16 39 H 0.13 1.61 7.60 -52.49 -0.40 1.21 16 40 H 0.13 1.71 8.06 -52.48 -0.42 1.29 16 41 H 0.41 7.50 7.13 45.56 0.32 7.83 16 LS Contribution 336.73 15.07 5.07 5.07 Total: -1.00 -27.49 336.73 -7.57 -35.06 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -4.25 Total: 11.69 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -2.34 Total: -5.89 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: 0.03 Total: -35.54 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -1.06 Total: -25.33 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.03 Total: 14.93 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -27.49 -7.57 -35.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231565273.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.329 kcal (2) G-P(sol) polarization free energy of solvation -27.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds