Wall clock time and date at job start Tue Mar 31 2020 07:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47181 * 2 1 4 4 C 1.53003 * 109.47181 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47245 * 180.02562 * 4 3 2 6 6 C 1.36935 * 119.99727 * 263.67383 * 5 4 3 7 7 H 1.08009 * 119.99985 * 189.80899 * 6 5 4 8 8 C 1.38805 * 120.00168 * 9.81099 * 6 5 4 9 9 N 1.31615 * 120.00242 * 24.02731 * 8 6 5 10 10 Si 1.86807 * 119.99807 * 204.03103 * 8 6 5 11 11 H 1.48497 * 109.46981 * 84.99070 * 10 8 6 12 12 H 1.48503 * 109.46858 * 204.98818 * 10 8 6 13 13 H 1.48498 * 109.47091 * 324.98814 * 10 8 6 14 14 C 1.46505 * 120.00365 * 83.67378 * 5 4 3 15 15 C 1.50702 * 109.46942 * 270.00480 * 14 5 4 16 16 C 1.37697 * 119.95507 * 104.72694 * 15 14 5 17 17 C 1.39775 * 119.89986 * 179.75060 * 16 15 14 18 18 C 1.47476 * 120.08657 * 180.24104 * 17 16 15 19 19 O 1.21497 * 120.00148 * 0.29976 * 18 17 16 20 20 O 1.34747 * 119.99778 * 180.28935 * 18 17 16 21 21 C 1.39811 * 119.82008 * 0.53971 * 17 16 15 22 22 C 1.37657 * 119.90050 * 359.70686 * 21 17 16 23 23 C 1.38992 * 119.94677 * 284.99230 * 15 14 5 24 24 O 1.35702 * 119.91229 * 0.02562 * 23 15 14 25 25 H 1.08996 * 109.47314 * 299.99939 * 1 2 3 26 26 H 1.09002 * 109.47123 * 60.00188 * 1 2 3 27 27 H 1.09004 * 109.47493 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46983 * 239.99257 * 2 1 3 29 29 H 1.09002 * 109.46618 * 119.99966 * 2 1 3 30 30 H 1.09004 * 109.47477 * 60.00202 * 3 2 1 31 31 H 1.09002 * 109.46938 * 299.99925 * 3 2 1 32 32 H 1.08994 * 109.46855 * 59.99823 * 4 3 2 33 33 H 1.09002 * 109.46618 * 299.99966 * 4 3 2 34 34 H 0.97000 * 120.00090 * 179.97438 * 9 8 6 35 35 H 1.09003 * 109.46720 * 29.99686 * 14 5 4 36 36 H 1.08997 * 109.47120 * 149.99905 * 14 5 4 37 37 H 1.08000 * 120.04662 * 359.97438 * 16 15 14 38 38 H 0.96700 * 117.00216 * 180.02562 * 20 18 17 39 39 H 1.07997 * 120.04915 * 179.69034 * 21 17 16 40 40 H 1.08004 * 119.94896 * 179.97438 * 22 21 17 41 41 H 0.96704 * 113.99685 * 89.99673 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0584 2.8236 0.0013 6 6 4.4103 3.4258 -1.1771 7 1 4.9165 4.3799 -1.1659 8 6 4.1166 2.8102 -2.3860 9 7 3.1313 1.9406 -2.4594 10 14 5.1197 3.2160 -3.9088 11 1 6.3401 2.3704 -3.9373 12 1 4.3059 2.9517 -5.1225 13 1 5.5104 4.6483 -3.8770 14 6 4.1703 3.5605 1.2625 15 6 2.8772 4.2839 1.5380 16 6 2.0107 3.8032 2.4941 17 6 0.8141 4.4779 2.7524 18 6 -0.1145 3.9697 3.7791 19 8 0.1627 2.9663 4.4057 20 8 -1.2702 4.6183 4.0226 21 6 0.4972 5.6324 2.0303 22 6 1.3668 6.1033 1.0726 23 6 2.5586 5.4322 0.8228 24 8 3.4126 5.8993 -0.1227 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5140 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9562 -0.8900 32 1 3.9337 0.9285 -0.8891 33 1 3.9329 0.9287 0.8909 34 1 2.9258 1.5107 -3.3043 35 1 4.3761 2.8625 2.0741 36 1 4.9828 4.2834 1.1901 37 1 2.2569 2.9082 3.0461 38 1 -1.8464 4.2476 4.7049 39 1 -0.4287 6.1539 2.2233 40 1 1.1225 6.9948 0.5141 41 1 3.2540 5.5418 -1.0071 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231565273.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:46 Heat of formation + Delta-G solvation = -110.401293 kcal Electronic energy + Delta-G solvation = -24619.548204 eV Core-core repulsion = 21078.460311 eV Total energy + Delta-G solvation = -3541.087893 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.47226 -40.39158 -37.92990 -37.40911 -37.00065 -35.11458 -33.84970 -31.86663 -31.21391 -29.64339 -27.27428 -25.32291 -25.29073 -23.21604 -22.66092 -21.58673 -21.53838 -19.26867 -18.91706 -18.55944 -18.04867 -16.99613 -16.63381 -16.53792 -16.14458 -15.84937 -15.46966 -15.27267 -14.93672 -14.70198 -14.52623 -14.17251 -13.57647 -13.42819 -13.28391 -13.19794 -13.04476 -12.86593 -12.74013 -12.52628 -12.38348 -12.21882 -11.83731 -11.77836 -11.74236 -11.64103 -11.37395 -11.22178 -11.03832 -10.28514 -9.80317 -9.52720 -8.76778 -7.72035 -5.05152 -0.31087 0.42577 1.50983 1.52694 1.59768 1.62636 2.10376 2.56772 2.73626 3.31505 3.53454 3.80720 3.87843 3.96164 4.21771 4.27822 4.33578 4.41929 4.50717 4.56920 4.73440 4.80028 4.86034 4.98658 5.07091 5.09472 5.11137 5.21654 5.24641 5.32673 5.39070 5.50478 5.57631 5.58339 5.62905 5.75190 5.79016 5.92900 6.27456 6.42086 6.86636 7.00567 7.28251 7.97369 8.41287 9.27405 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015491 B = 0.006126 C = 0.004965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.022667 B = 4569.816337 C = 5638.614104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.112 4.112 3 C -0.105 4.105 4 C 0.175 3.825 5 N -0.598 5.598 6 C -0.251 4.251 7 H 0.084 0.916 8 C -0.041 4.041 9 N -0.904 5.904 10 Si 0.946 3.054 11 H -0.300 1.300 12 H -0.305 1.305 13 H -0.272 1.272 14 C 0.187 3.813 15 C -0.136 4.136 16 C -0.040 4.040 17 C -0.163 4.163 18 C 0.538 3.462 19 O -0.551 6.551 20 O -0.501 6.501 21 C -0.043 4.043 22 C -0.169 4.169 23 C 0.159 3.841 24 O -0.504 6.504 25 H 0.044 0.956 26 H 0.042 0.958 27 H 0.062 0.938 28 H 0.045 0.955 29 H 0.049 0.951 30 H 0.023 0.977 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.010 0.990 34 H 0.244 0.756 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.124 0.876 38 H 0.432 0.568 39 H 0.164 0.836 40 H 0.153 0.847 41 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.595 5.120 8.705 12.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.150 4.150 3 C -0.144 4.144 4 C 0.050 3.950 5 N -0.318 5.318 6 C -0.380 4.380 7 H 0.102 0.898 8 C -0.237 4.237 9 N -0.550 5.550 10 Si 0.777 3.223 11 H -0.228 1.228 12 H -0.232 1.232 13 H -0.197 1.197 14 C 0.060 3.940 15 C -0.139 4.139 16 C -0.059 4.059 17 C -0.164 4.164 18 C 0.385 3.615 19 O -0.444 6.444 20 O -0.315 6.315 21 C -0.062 4.062 22 C -0.188 4.188 23 C 0.113 3.887 24 O -0.320 6.320 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.041 0.959 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.028 0.972 34 H 0.053 0.947 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.142 0.858 38 H 0.294 0.706 39 H 0.182 0.818 40 H 0.171 0.829 41 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -7.047 5.249 8.861 12.479 hybrid contribution -0.001 -0.636 -1.075 1.249 sum -7.047 4.613 7.786 11.470 Atomic orbital electron populations 1.21641 0.95812 1.01263 1.00673 1.21349 0.95812 0.97811 1.00028 1.21956 0.97630 0.95079 0.99752 1.20748 0.92832 0.84294 0.97118 1.44406 1.75208 1.10081 1.02089 1.19552 1.29862 1.04840 0.83780 0.89803 1.25265 0.98524 1.00734 0.99138 1.70300 1.27392 1.32840 1.24506 0.85601 0.78510 0.77875 0.80267 1.22829 1.23214 1.19682 1.19820 0.91848 0.93820 0.88464 1.21307 1.00862 0.95053 0.96721 1.20922 0.91817 0.97914 0.95232 1.19089 0.95910 1.00367 1.01069 1.20752 0.80190 0.79982 0.80583 1.90868 1.76351 1.26703 1.50447 1.84515 1.30707 1.56537 1.59697 1.21407 0.99340 0.93243 0.92176 1.21615 0.93129 1.02722 1.01286 1.18869 0.88671 0.90796 0.90384 1.84519 1.56148 1.69673 1.21621 0.93652 0.93923 0.91896 0.93634 0.93222 0.95857 0.91571 0.92242 0.97164 0.94662 0.92385 0.92225 0.85777 0.70591 0.81836 0.82888 0.73230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.49 9.91 71.98 0.71 -3.78 16 2 C -0.11 -4.23 5.93 30.59 0.18 -4.05 16 3 C -0.10 -4.54 4.86 30.59 0.15 -4.39 16 4 C 0.18 8.03 4.91 86.38 0.42 8.45 16 5 N -0.60 -27.06 2.53 -706.34 -1.78 -28.84 16 6 C -0.25 -12.03 7.67 84.03 0.64 -11.39 16 7 H 0.08 3.94 6.73 -2.91 -0.02 3.92 16 8 C -0.04 -2.01 4.90 84.86 0.42 -1.60 16 9 N -0.90 -47.05 8.55 21.65 0.19 -46.87 16 10 Si 0.95 41.82 29.62 68.60 2.03 43.85 16 11 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 12 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 13 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 14 C 0.19 7.33 5.52 85.63 0.47 7.80 16 15 C -0.14 -4.96 4.90 -19.81 -0.10 -5.05 16 16 C -0.04 -1.36 7.54 22.51 0.17 -1.19 16 17 C -0.16 -4.92 5.87 -20.09 -0.12 -5.04 16 18 C 0.54 15.01 8.26 70.26 0.58 15.59 16 19 O -0.55 -18.62 17.12 19.84 0.34 -18.28 16 20 O -0.50 -9.41 12.67 -56.58 -0.72 -10.13 16 21 C -0.04 -1.13 9.61 22.51 0.22 -0.91 16 22 C -0.17 -4.82 9.97 22.32 0.22 -4.60 16 23 C 0.16 5.54 6.67 22.64 0.15 5.69 16 24 O -0.50 -18.31 11.47 -90.22 -1.04 -19.34 16 25 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.02 0.99 5.89 -2.39 -0.01 0.97 16 31 H 0.07 3.33 6.26 -2.39 -0.01 3.32 16 32 H 0.06 3.08 5.90 -2.39 -0.01 3.06 16 33 H 0.01 0.44 7.98 -2.39 -0.02 0.42 16 34 H 0.24 12.75 8.31 -92.71 -0.77 11.98 16 35 H 0.06 2.13 7.76 -2.39 -0.02 2.11 16 36 H 0.06 2.35 7.88 -2.39 -0.02 2.33 16 37 H 0.12 4.37 7.58 -2.91 -0.02 4.35 16 38 H 0.43 3.91 9.11 -74.06 -0.67 3.23 16 39 H 0.16 3.21 7.60 -2.91 -0.02 3.18 16 40 H 0.15 3.57 8.06 -2.91 -0.02 3.54 16 41 H 0.41 14.94 7.13 -74.05 -0.53 14.41 16 Total: -1.00 -59.10 336.73 3.01 -56.09 By element: Atomic # 1 Polarization: 28.13 SS G_CDS: -0.14 Total: 28.00 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: 4.13 Total: -4.47 kcal Atomic # 7 Polarization: -74.11 SS G_CDS: -1.60 Total: -75.71 kcal Atomic # 8 Polarization: -46.35 SS G_CDS: -1.41 Total: -47.76 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Total: -59.10 3.01 -56.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231565273.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.309 kcal (2) G-P(sol) polarization free energy of solvation -59.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds