Wall clock time and date at job start Tue Mar 31 2020 06:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31785 * 122.75316 * 2 1 4 4 C 1.29020 * 117.12828 * 180.22723 * 3 2 1 5 5 S 1.70978 * 110.16691 * 359.54331 * 4 3 2 6 6 C 1.33644 * 122.75009 * 179.73486 * 2 1 3 7 7 C 1.50696 * 126.03628 * 359.96025 * 6 2 1 8 8 N 1.46898 * 109.47454 * 263.24186 * 7 6 2 9 9 C 1.47366 * 111.00313 * 163.80805 * 8 7 6 10 10 C 1.54002 * 108.19082 * 170.63739 * 9 8 7 11 11 H 1.09002 * 114.74551 * 154.38387 * 10 9 8 12 12 C 1.54265 * 110.81137 * 288.20711 * 10 9 8 13 13 C 1.54261 * 84.60857 * 79.43931 * 12 10 9 14 14 H 1.08996 * 116.04764 * 147.38494 * 13 12 10 15 15 C 1.47360 * 111.00362 * 287.23451 * 8 7 6 16 16 N 1.48566 * 110.22093 * 20.17790 * 10 9 8 17 17 C 1.46905 * 111.00188 * 33.11776 * 16 10 9 18 18 C 1.50697 * 109.47434 * 148.65959 * 17 16 10 19 19 H 1.07997 * 119.99682 * 0.02562 * 18 17 16 20 20 C 1.37869 * 119.99850 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00390 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99918 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47084 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47176 * 120.00001 * 22 20 18 25 25 H 1.48497 * 109.47635 * 240.00195 * 22 20 18 26 26 H 1.08999 * 109.47030 * 263.93640 * 1 2 3 27 27 H 1.08995 * 109.46699 * 23.93913 * 1 2 3 28 28 H 1.09005 * 109.46940 * 143.93566 * 1 2 3 29 29 H 1.07996 * 124.91991 * 179.81542 * 4 3 2 30 30 H 1.08995 * 109.47136 * 23.24271 * 7 6 2 31 31 H 1.09001 * 109.47213 * 143.24659 * 7 6 2 32 32 H 1.08997 * 109.72153 * 290.31606 * 9 8 7 33 33 H 1.09007 * 109.71522 * 50.92100 * 9 8 7 34 34 H 1.09005 * 114.00784 * 193.35662 * 12 10 9 35 35 H 1.09005 * 114.00920 * 325.36977 * 12 10 9 36 36 H 1.09003 * 109.71608 * 309.03694 * 15 8 7 37 37 H 1.09000 * 109.72246 * 69.68300 * 15 8 7 38 38 H 1.09002 * 109.46775 * 268.66351 * 17 16 10 39 39 H 1.09002 * 109.46569 * 28.65561 * 17 16 10 40 40 H 0.97004 * 120.00214 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2200 1.1083 0.0000 4 6 3.5040 0.9819 -0.0046 5 16 3.9333 -0.6731 0.0033 6 6 2.2300 -1.1240 0.0052 7 6 1.6847 -2.5288 0.0125 8 7 1.6602 -3.0375 1.3904 9 6 0.7970 -4.2269 1.4991 10 6 1.0008 -4.8428 2.8959 11 1 0.1555 -5.4226 3.2666 12 6 2.3836 -5.5185 3.0005 13 6 2.9076 -4.0828 3.2102 14 1 3.7742 -3.9802 3.8632 15 6 3.0218 -3.3401 1.8660 16 7 1.5769 -3.8345 3.8226 17 6 1.0924 -2.4856 3.5003 18 6 1.0131 -1.6655 4.7620 19 1 1.2949 -2.1024 5.7086 20 6 0.5809 -0.3574 4.7079 21 7 0.2374 0.1745 3.5552 22 14 0.4820 0.6591 6.2720 23 1 0.9203 -0.1654 7.4267 24 1 1.3659 1.8459 6.1479 25 1 -0.9184 1.1050 6.4849 26 1 -0.3633 -0.1086 1.0219 27 1 -0.3632 0.9392 -0.4170 28 1 -0.3633 -0.8308 -0.6050 29 1 4.2060 1.8025 -0.0080 30 1 0.6728 -2.5279 -0.3924 31 1 2.3205 -3.1686 -0.5996 32 1 -0.2462 -3.9370 1.3736 33 1 1.0719 -4.9520 0.7330 34 1 2.4971 -6.1638 3.8716 35 1 2.7203 -5.9853 2.0748 36 1 3.5332 -3.9714 1.1393 37 1 3.5778 -2.4128 2.0042 38 1 1.7798 -2.0103 2.8005 39 1 0.1029 -2.5535 3.0481 40 1 -0.0664 1.0950 3.5171 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277939541.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:37 Heat of formation + Delta-G solvation = 147.188222 kcal Electronic energy + Delta-G solvation = -22840.971960 eV Core-core repulsion = 19786.099608 eV Total energy + Delta-G solvation = -3054.872351 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.17090 -39.30780 -35.34419 -32.67602 -31.55383 -29.66478 -29.44141 -28.38824 -25.37980 -25.13065 -23.97210 -22.18589 -22.00567 -21.22776 -18.32594 -17.87727 -17.35401 -16.35245 -15.99482 -15.53155 -14.69825 -14.60889 -14.36993 -14.15322 -13.67338 -13.43322 -13.12045 -13.03001 -12.37544 -12.04627 -11.89584 -11.83609 -11.71502 -11.59869 -11.26647 -10.93943 -10.88978 -10.77297 -10.63518 -10.26548 -10.06882 -9.67570 -9.26659 -9.21749 -9.05308 -8.83431 -8.26745 -8.16323 -8.07563 -6.87387 -5.71758 -3.70542 1.16087 1.81172 2.16146 3.34714 3.42586 3.50476 3.55422 4.21656 4.60722 4.67909 4.84102 4.86735 5.08821 5.14692 5.34034 5.47102 5.55523 5.57175 5.65690 5.72495 5.74415 5.81686 5.94415 5.97188 6.02578 6.15610 6.23044 6.30370 6.45400 6.48110 6.55002 6.66540 6.73478 7.06379 7.29437 7.32132 7.89919 8.04808 8.23399 8.25060 8.50250 8.86203 9.37008 9.88393 11.34068 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.010999 B = 0.009240 C = 0.006062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2544.964688 B = 3029.468765 C = 4618.156785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.107 3.893 3 N -0.460 5.460 4 C 0.018 3.982 5 S 0.080 5.920 6 C -0.204 4.204 7 C 0.128 3.872 8 N -0.491 5.491 9 C 0.043 3.957 10 C 0.016 3.984 11 H 0.100 0.900 12 C -0.138 4.138 13 C 0.022 3.978 14 H 0.100 0.900 15 C 0.039 3.961 16 N -0.453 5.453 17 C 0.156 3.844 18 C -0.504 4.504 19 H 0.051 0.949 20 C 0.058 3.942 21 N -0.885 5.885 22 Si 0.881 3.119 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.288 1.288 26 H 0.113 0.887 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.191 0.809 30 H 0.092 0.908 31 H 0.037 0.963 32 H 0.082 0.918 33 H 0.033 0.967 34 H 0.087 0.913 35 H 0.054 0.946 36 H 0.033 0.967 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.019 0.981 40 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.505 -6.524 -10.993 13.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.024 4.024 3 N -0.174 5.174 4 C -0.281 4.281 5 S 0.332 5.668 6 C -0.325 4.325 7 C -0.001 4.001 8 N -0.216 5.216 9 C -0.086 4.086 10 C -0.095 4.095 11 H 0.118 0.882 12 C -0.176 4.176 13 C -0.089 4.089 14 H 0.118 0.882 15 C -0.090 4.090 16 N -0.175 5.175 17 C 0.030 3.970 18 C -0.543 4.543 19 H 0.069 0.931 20 C -0.142 4.142 21 N -0.525 5.525 22 Si 0.710 3.290 23 H -0.202 1.202 24 H -0.216 1.216 25 H -0.215 1.215 26 H 0.132 0.868 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.208 0.792 30 H 0.110 0.890 31 H 0.055 0.945 32 H 0.101 0.899 33 H 0.051 0.949 34 H 0.106 0.894 35 H 0.073 0.927 36 H 0.051 0.949 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.037 0.963 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.861 -5.968 -10.033 13.063 hybrid contribution -0.449 0.514 -0.329 0.757 sum 5.412 -5.454 -10.362 12.900 Atomic orbital electron populations 1.20469 0.87125 1.00994 1.05505 1.20049 0.98176 0.85594 0.98623 1.66121 1.04758 1.31928 1.14569 1.28083 0.95375 0.99248 1.05357 1.83624 1.08769 1.04801 1.69563 1.25233 0.93679 1.00055 1.13498 1.20427 1.00323 0.88981 0.90392 1.64352 1.09919 1.29339 1.17949 1.22758 0.98490 0.90574 0.96788 1.23876 0.97148 0.96661 0.91788 0.88192 1.23715 0.96735 0.96237 1.00894 1.23856 0.97466 0.94059 0.93494 0.88244 1.22716 0.90073 1.00144 0.96031 1.69563 1.00117 1.08752 1.39096 1.20803 0.97267 0.83375 0.95519 1.21481 1.42221 0.96027 0.94594 0.93089 1.24842 0.96440 0.97604 0.95358 1.69911 1.45789 1.13549 1.23285 0.86724 0.77255 0.80339 0.84684 1.20160 1.21589 1.21467 0.86841 0.92085 0.92232 0.79236 0.89017 0.94528 0.89939 0.94897 0.89446 0.92741 0.94938 0.89720 0.90653 0.96269 0.93741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.47 9.93 36.01 0.36 -1.11 16 2 C 0.11 2.03 6.74 -84.22 -0.57 1.46 16 3 N -0.46 -8.81 10.53 -11.90 -0.13 -8.93 16 4 C 0.02 0.29 12.23 51.58 0.63 0.92 16 5 S 0.08 1.21 21.80 -107.50 -2.34 -1.14 16 6 C -0.20 -3.52 5.68 -35.92 -0.20 -3.72 16 7 C 0.13 2.00 5.26 -4.98 -0.03 1.98 16 8 N -0.49 -8.72 1.53 -233.98 -0.36 -9.07 16 9 C 0.04 0.68 4.61 -3.05 -0.01 0.67 16 10 C 0.02 0.27 5.33 -66.53 -0.35 -0.09 16 11 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 12 C -0.14 -2.07 7.54 -25.66 -0.19 -2.27 16 13 C 0.02 0.39 5.42 -66.52 -0.36 0.03 16 14 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 15 C 0.04 0.67 4.20 -3.05 -0.01 0.66 16 16 N -0.45 -9.82 6.19 -233.59 -1.45 -11.27 16 17 C 0.16 3.97 3.49 -4.97 -0.02 3.95 16 18 C -0.50 -14.63 9.39 -34.44 -0.32 -14.95 16 19 H 0.05 1.53 7.81 -52.49 -0.41 1.12 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 21 N -0.89 -25.60 12.73 55.43 0.71 -24.89 16 22 Si 0.88 22.57 29.54 -169.99 -5.02 17.55 16 23 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 26 H 0.11 2.46 7.58 -51.93 -0.39 2.07 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.06 0.90 6.89 -51.93 -0.36 0.54 16 29 H 0.19 2.31 8.06 -52.49 -0.42 1.89 16 30 H 0.09 1.34 6.55 -51.93 -0.34 1.00 16 31 H 0.04 0.51 7.90 -51.93 -0.41 0.09 16 32 H 0.08 1.35 7.96 -51.93 -0.41 0.93 16 33 H 0.03 0.45 8.04 -51.92 -0.42 0.03 16 34 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.05 0.71 8.01 -51.93 -0.42 0.30 16 36 H 0.03 0.49 7.88 -51.93 -0.41 0.08 16 37 H 0.08 1.59 6.40 -51.93 -0.33 1.26 16 38 H 0.08 1.97 4.39 -59.04 -0.26 1.71 16 39 H 0.02 0.53 6.78 -51.93 -0.35 0.18 16 40 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 324.07 15.07 4.88 4.88 Total: -1.00 -31.77 324.07 -10.65 -42.42 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -5.76 Total: 1.36 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: -1.18 Total: -10.91 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: -1.22 Total: -54.17 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Atomic # 16 Polarization: 1.21 SS G_CDS: -2.34 Total: -1.14 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.77 -10.65 -42.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277939541.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.611 kcal (2) G-P(sol) polarization free energy of solvation -31.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds