Wall clock time and date at job start Tue Mar 31 2020 06:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31785 * 122.75316 * 2 1 4 4 C 1.29020 * 117.12828 * 180.22723 * 3 2 1 5 5 S 1.70978 * 110.16691 * 359.54331 * 4 3 2 6 6 C 1.33644 * 122.75009 * 179.73486 * 2 1 3 7 7 C 1.50696 * 126.03628 * 359.96025 * 6 2 1 8 8 N 1.46898 * 109.47454 * 263.24186 * 7 6 2 9 9 C 1.47366 * 111.00313 * 163.80805 * 8 7 6 10 10 C 1.54002 * 108.19082 * 170.63739 * 9 8 7 11 11 H 1.09002 * 114.74551 * 154.38387 * 10 9 8 12 12 C 1.54265 * 110.81137 * 288.20711 * 10 9 8 13 13 C 1.54261 * 84.60857 * 79.43931 * 12 10 9 14 14 H 1.08996 * 116.04764 * 147.38494 * 13 12 10 15 15 C 1.47360 * 111.00362 * 287.23451 * 8 7 6 16 16 N 1.48566 * 110.22093 * 20.17790 * 10 9 8 17 17 C 1.46905 * 111.00188 * 33.11776 * 16 10 9 18 18 C 1.50697 * 109.47434 * 148.65959 * 17 16 10 19 19 H 1.07997 * 119.99682 * 0.02562 * 18 17 16 20 20 C 1.37869 * 119.99850 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00390 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99918 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47084 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47176 * 120.00001 * 22 20 18 25 25 H 1.48497 * 109.47635 * 240.00195 * 22 20 18 26 26 H 1.08999 * 109.47030 * 263.93640 * 1 2 3 27 27 H 1.08995 * 109.46699 * 23.93913 * 1 2 3 28 28 H 1.09005 * 109.46940 * 143.93566 * 1 2 3 29 29 H 1.07996 * 124.91991 * 179.81542 * 4 3 2 30 30 H 1.08995 * 109.47136 * 23.24271 * 7 6 2 31 31 H 1.09001 * 109.47213 * 143.24659 * 7 6 2 32 32 H 1.08997 * 109.72153 * 290.31606 * 9 8 7 33 33 H 1.09007 * 109.71522 * 50.92100 * 9 8 7 34 34 H 1.09005 * 114.00784 * 193.35662 * 12 10 9 35 35 H 1.09005 * 114.00920 * 325.36977 * 12 10 9 36 36 H 1.09003 * 109.71608 * 309.03694 * 15 8 7 37 37 H 1.09000 * 109.72246 * 69.68300 * 15 8 7 38 38 H 1.09002 * 109.46775 * 268.66351 * 17 16 10 39 39 H 1.09002 * 109.46569 * 28.65561 * 17 16 10 40 40 H 0.97004 * 120.00214 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2200 1.1083 0.0000 4 6 3.5040 0.9819 -0.0046 5 16 3.9333 -0.6731 0.0033 6 6 2.2300 -1.1240 0.0052 7 6 1.6847 -2.5288 0.0125 8 7 1.6602 -3.0375 1.3904 9 6 0.7970 -4.2269 1.4991 10 6 1.0008 -4.8428 2.8959 11 1 0.1555 -5.4226 3.2666 12 6 2.3836 -5.5185 3.0005 13 6 2.9076 -4.0828 3.2102 14 1 3.7742 -3.9802 3.8632 15 6 3.0218 -3.3401 1.8660 16 7 1.5769 -3.8345 3.8226 17 6 1.0924 -2.4856 3.5003 18 6 1.0131 -1.6655 4.7620 19 1 1.2949 -2.1024 5.7086 20 6 0.5809 -0.3574 4.7079 21 7 0.2374 0.1745 3.5552 22 14 0.4820 0.6591 6.2720 23 1 0.9203 -0.1654 7.4267 24 1 1.3659 1.8459 6.1479 25 1 -0.9184 1.1050 6.4849 26 1 -0.3633 -0.1086 1.0219 27 1 -0.3632 0.9392 -0.4170 28 1 -0.3633 -0.8308 -0.6050 29 1 4.2060 1.8025 -0.0080 30 1 0.6728 -2.5279 -0.3924 31 1 2.3205 -3.1686 -0.5996 32 1 -0.2462 -3.9370 1.3736 33 1 1.0719 -4.9520 0.7330 34 1 2.4971 -6.1638 3.8716 35 1 2.7203 -5.9853 2.0748 36 1 3.5332 -3.9714 1.1393 37 1 3.5778 -2.4128 2.0042 38 1 1.7798 -2.0103 2.8005 39 1 0.1029 -2.5535 3.0481 40 1 -0.0664 1.0950 3.5171 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277939541.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:37 Heat of formation + Delta-G solvation = 125.382279 kcal Electronic energy + Delta-G solvation = -22841.917536 eV Core-core repulsion = 19786.099608 eV Total energy + Delta-G solvation = -3055.817928 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.56789 -40.61782 -36.65768 -34.82904 -32.88386 -31.28701 -30.94145 -29.70949 -27.15352 -26.60919 -25.25765 -23.52716 -23.30840 -23.04373 -19.65014 -19.20941 -18.68938 -18.24366 -17.48823 -16.86905 -16.58297 -16.06273 -15.76103 -15.60521 -15.31695 -14.69543 -14.48031 -14.32837 -13.94866 -13.48318 -13.31829 -13.29835 -13.19352 -13.03761 -12.91152 -12.74614 -12.54941 -12.34111 -12.08246 -11.90679 -11.86298 -11.20923 -11.04925 -10.82874 -10.49940 -10.31509 -10.09649 -9.65889 -9.44586 -8.43997 -7.86744 -5.97452 -0.10529 0.59491 0.89326 1.35726 1.38420 1.49007 2.00411 2.48720 2.93314 3.33579 3.46462 3.50361 3.57577 3.84583 3.85162 4.14218 4.19098 4.35920 4.37986 4.42521 4.53610 4.57138 4.64453 4.69454 4.71783 4.89949 4.96167 4.97999 5.11728 5.16099 5.21183 5.24778 5.29433 5.57849 5.77564 5.97863 6.00174 6.12449 6.34311 6.49238 6.88476 6.95090 7.19687 7.64247 9.09725 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.010999 B = 0.009240 C = 0.006062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2544.964688 B = 3029.468765 C = 4618.156785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.077 3.923 3 N -0.500 5.500 4 C 0.008 3.992 5 S 0.132 5.868 6 C -0.218 4.218 7 C 0.133 3.867 8 N -0.525 5.525 9 C 0.049 3.951 10 C 0.010 3.990 11 H 0.104 0.896 12 C -0.109 4.109 13 C 0.012 3.988 14 H 0.096 0.904 15 C 0.047 3.953 16 N -0.492 5.492 17 C 0.184 3.816 18 C -0.531 4.531 19 H 0.030 0.970 20 C 0.016 3.984 21 N -0.894 5.894 22 Si 0.935 3.065 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.283 1.283 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.083 0.917 29 H 0.222 0.778 30 H 0.097 0.903 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.070 0.930 39 H -0.012 1.012 40 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.909 -8.064 -12.076 16.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.054 4.054 3 N -0.214 5.214 4 C -0.289 4.289 5 S 0.385 5.615 6 C -0.339 4.339 7 C 0.003 3.997 8 N -0.249 5.249 9 C -0.079 4.079 10 C -0.100 4.100 11 H 0.122 0.878 12 C -0.146 4.146 13 C -0.098 4.098 14 H 0.114 0.886 15 C -0.081 4.081 16 N -0.215 5.215 17 C 0.057 3.943 18 C -0.570 4.570 19 H 0.049 0.951 20 C -0.183 4.183 21 N -0.534 5.534 22 Si 0.763 3.237 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.209 1.209 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.101 0.899 29 H 0.238 0.762 30 H 0.115 0.885 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.113 0.887 35 H 0.106 0.894 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.006 0.994 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 7.273 -7.525 -11.119 15.269 hybrid contribution -0.837 0.971 0.028 1.282 sum 6.435 -6.554 -11.091 14.401 Atomic orbital electron populations 1.20311 0.87479 1.02117 1.03284 1.20210 0.98523 0.86425 1.00257 1.66126 1.06201 1.32722 1.16392 1.28691 0.95106 1.01142 1.03995 1.83337 1.06622 1.03358 1.68157 1.25576 0.95201 1.00536 1.12587 1.20458 1.01265 0.88342 0.89609 1.63951 1.10486 1.30784 1.19725 1.22673 0.97683 0.90674 0.96865 1.24038 0.98732 0.95619 0.91609 0.87827 1.23544 0.93879 0.94415 1.02782 1.23996 0.95641 0.96431 0.93776 0.88637 1.22586 0.89921 0.99453 0.96173 1.69425 1.02899 1.07385 1.41757 1.20359 0.95459 0.85335 0.93159 1.21858 1.42724 0.97088 0.95376 0.95134 1.25481 0.96317 0.98575 0.97948 1.70047 1.45607 1.13367 1.24352 0.85876 0.77331 0.78839 0.81680 1.20198 1.21306 1.20885 0.90950 0.91924 0.89861 0.76168 0.88517 0.91789 0.91148 0.91292 0.88682 0.89406 0.91799 0.92028 0.91239 0.99437 0.94063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.68 9.93 71.24 0.71 -1.98 16 2 C 0.08 2.94 6.74 41.52 0.28 3.22 16 3 N -0.50 -19.18 10.53 -191.55 -2.02 -21.19 16 4 C 0.01 0.25 12.23 130.66 1.60 1.85 16 5 S 0.13 3.73 21.80 -56.49 -1.23 2.50 16 6 C -0.22 -7.29 5.68 24.64 0.14 -7.15 16 7 C 0.13 3.86 5.26 85.56 0.45 4.31 16 8 N -0.52 -17.83 1.53 -894.18 -1.37 -19.20 16 9 C 0.05 1.47 4.61 86.55 0.40 1.87 16 10 C 0.01 0.33 5.33 44.76 0.24 0.56 16 11 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 12 C -0.11 -2.88 7.54 31.54 0.24 -2.64 16 13 C 0.01 0.40 5.42 44.76 0.24 0.64 16 14 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 15 C 0.05 1.52 4.20 86.55 0.36 1.88 16 16 N -0.49 -21.25 6.19 -892.93 -5.53 -26.78 16 17 C 0.18 9.53 3.49 85.56 0.30 9.83 16 18 C -0.53 -31.72 9.39 25.60 0.24 -31.48 16 19 H 0.03 1.89 7.81 -2.91 -0.02 1.87 16 20 C 0.02 0.94 5.46 84.65 0.46 1.40 16 21 N -0.89 -53.10 12.73 21.44 0.27 -52.82 16 22 Si 0.93 47.22 29.54 68.60 2.03 49.24 16 23 H -0.28 -13.88 7.11 99.48 0.71 -13.18 16 24 H -0.29 -14.28 7.11 99.48 0.71 -13.58 16 25 H -0.28 -13.95 7.11 99.48 0.71 -13.25 16 26 H 0.07 3.30 7.58 -2.39 -0.02 3.28 16 27 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.08 2.53 6.89 -2.38 -0.02 2.51 16 29 H 0.22 4.98 8.06 -2.91 -0.02 4.96 16 30 H 0.10 2.67 6.55 -2.39 -0.02 2.65 16 31 H 0.06 1.51 7.90 -2.39 -0.02 1.49 16 32 H 0.07 2.25 7.96 -2.39 -0.02 2.23 16 33 H 0.07 1.57 8.04 -2.38 -0.02 1.55 16 34 H 0.09 2.39 8.14 -2.38 -0.02 2.37 16 35 H 0.09 1.81 8.01 -2.38 -0.02 1.79 16 36 H 0.06 1.63 7.88 -2.39 -0.02 1.61 16 37 H 0.06 2.24 6.40 -2.39 -0.02 2.22 16 38 H 0.07 3.70 4.39 -16.42 -0.07 3.63 16 39 H -0.01 -0.71 6.78 -2.39 -0.02 -0.73 16 40 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -70.86 324.07 -1.21 -72.07 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 0.98 Total: 13.86 kcal Atomic # 6 Polarization: -23.33 SS G_CDS: 5.66 Total: -17.68 kcal Atomic # 7 Polarization: -111.35 SS G_CDS: -8.64 Total: -119.99 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.24 kcal Atomic # 16 Polarization: 3.73 SS G_CDS: -1.23 Total: 2.50 kcal Total: -70.86 -1.21 -72.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277939541.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.452 kcal (2) G-P(sol) polarization free energy of solvation -70.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds