Wall clock time and date at job start Tue Mar 31 2020 07:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47053 * 2 1 4 4 C 1.53002 * 109.47054 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47261 * 59.99280 * 4 3 2 6 6 O 1.42904 * 109.46379 * 299.99678 * 4 3 2 7 7 C 1.50700 * 109.46848 * 179.97438 * 4 3 2 8 8 O 1.21283 * 120.00041 * 334.99440 * 7 4 3 9 9 N 1.34782 * 119.99360 * 154.99454 * 7 4 3 10 10 C 1.39995 * 119.99338 * 175.49379 * 9 7 4 11 11 C 1.38924 * 119.99806 * 214.84692 * 10 9 7 12 12 C 1.38007 * 119.99531 * 179.79349 * 11 10 9 13 13 C 1.38914 * 119.99935 * 0.46766 * 12 11 10 14 14 O 1.35773 * 119.99636 * 179.76696 * 13 12 11 15 15 C 1.34818 * 117.00268 * 185.35893 * 14 13 12 16 16 H 1.08002 * 119.99441 * 354.96924 * 15 14 13 17 17 C 1.38627 * 120.00452 * 174.96053 * 15 14 13 18 18 N 1.31580 * 119.99649 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00121 * 180.02562 * 17 15 14 20 20 H 1.48490 * 109.47254 * 60.00143 * 19 17 15 21 21 H 1.48500 * 109.46963 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46823 * 300.00120 * 19 17 15 23 23 C 1.38903 * 120.00321 * 359.78886 * 13 12 11 24 24 C 1.38007 * 120.00338 * 359.97438 * 23 13 12 25 25 H 1.08997 * 109.47261 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47230 * 300.00129 * 1 2 3 27 27 H 1.09004 * 109.47258 * 60.00010 * 1 2 3 28 28 H 1.08992 * 109.46947 * 239.99756 * 2 1 3 29 29 H 1.08999 * 109.46823 * 119.99823 * 2 1 3 30 30 H 1.08997 * 109.47360 * 59.99578 * 3 2 1 31 31 H 1.09000 * 109.46583 * 300.00104 * 3 2 1 32 32 H 1.08997 * 109.47477 * 300.00474 * 5 4 3 33 33 H 1.09003 * 109.46944 * 179.97438 * 5 4 3 34 34 H 1.09004 * 109.46730 * 60.00386 * 5 4 3 35 35 H 0.96698 * 114.00334 * 299.99845 * 6 4 3 36 36 H 0.97000 * 120.00242 * 355.50382 * 9 7 4 37 37 H 1.07990 * 120.00267 * 0.02612 * 11 10 9 38 38 H 1.07997 * 119.99976 * 180.23045 * 12 11 10 39 39 H 0.97000 * 119.99410 * 179.97438 * 18 17 15 40 40 H 1.08004 * 119.99811 * 179.97438 * 23 13 12 41 41 H 1.07998 * 119.99637 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0795 0.7213 -1.2501 6 8 4.0467 0.7687 1.1660 7 6 4.0723 2.8633 -0.0013 8 8 3.3768 3.7522 -0.4452 9 7 5.2945 3.1462 0.4916 10 6 5.7995 4.4490 0.4054 11 6 7.1586 4.6552 0.2049 12 6 7.6558 5.9395 0.1157 13 6 6.7987 7.0261 0.2362 14 8 7.2886 8.2896 0.1532 15 6 6.4249 9.2977 0.3887 16 1 5.3784 9.0854 0.5501 17 6 6.8802 10.6066 0.4237 18 7 8.1552 10.8651 0.2267 19 14 5.6836 12.0032 0.7508 20 1 5.0471 11.8092 2.0783 21 1 6.4151 13.2954 0.7362 22 1 4.6372 12.0154 -0.3029 23 6 5.4406 6.8199 0.4420 24 6 4.9425 5.5356 0.5263 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6766 1.9562 -0.8900 32 1 3.7162 -0.3063 -1.2501 33 1 5.1696 0.7217 -1.2507 34 1 3.7158 1.2353 -2.1399 35 1 3.7617 1.1721 1.9973 36 1 5.8241 2.4470 0.9057 37 1 7.8255 3.8106 0.1150 38 1 8.7118 6.0999 -0.0440 39 1 8.4736 11.7811 0.2509 40 1 4.7743 7.6647 0.5361 41 1 3.8866 5.3754 0.6868 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319483122.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:45 Heat of formation + Delta-G solvation = -96.934145 kcal Electronic energy + Delta-G solvation = -23087.666083 eV Core-core repulsion = 19547.162170 eV Total energy + Delta-G solvation = -3540.503914 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.65320 -38.96261 -37.67720 -36.41247 -34.68091 -33.77172 -32.18924 -31.32792 -30.21548 -28.04170 -27.05788 -25.39592 -24.17348 -22.38421 -21.69588 -20.72815 -19.98609 -18.45303 -17.86823 -17.26141 -16.48834 -15.99206 -15.71970 -15.16649 -14.84637 -14.51479 -14.37876 -13.72729 -13.63910 -13.61866 -13.47872 -12.89241 -12.75344 -12.71213 -12.46324 -12.32608 -12.10182 -11.91919 -11.73704 -11.55973 -11.51299 -11.22058 -11.01900 -10.90002 -10.75537 -10.69367 -10.45541 -9.69716 -9.49732 -9.13941 -8.70469 -8.22298 -6.95674 -6.45068 -4.02828 2.02342 2.19000 2.72597 3.13572 3.14594 3.17992 3.18951 3.81982 3.97448 4.40438 4.49777 4.54257 4.66705 4.90524 4.92536 5.09204 5.18142 5.25145 5.36154 5.45306 5.50263 5.61197 5.62131 5.66399 5.73096 5.76404 5.85297 6.01009 6.08589 6.12766 6.17106 6.31621 6.71049 6.82348 6.97646 7.05408 7.15865 7.28551 7.42585 7.67539 7.77022 7.99908 8.30646 9.00526 9.69607 10.72734 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.028120 B = 0.003011 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.505170 B = 9296.813975 C =10047.852191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.132 4.132 4 C 0.123 3.877 5 C -0.139 4.139 6 O -0.551 6.551 7 C 0.479 3.521 8 O -0.521 6.521 9 N -0.651 5.651 10 C 0.029 3.971 11 C -0.091 4.091 12 C -0.178 4.178 13 C 0.147 3.853 14 O -0.176 6.176 15 C -0.391 4.391 16 H 0.092 0.908 17 C 0.039 3.961 18 N -0.863 5.863 19 Si 0.941 3.059 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.269 1.269 23 C -0.221 4.221 24 C -0.064 4.064 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.381 0.619 36 H 0.406 0.594 37 H 0.115 0.885 38 H 0.122 0.878 39 H 0.271 0.729 40 H 0.130 0.870 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.685 -20.433 1.248 22.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.171 4.171 4 C 0.079 3.921 5 C -0.196 4.196 6 O -0.357 6.357 7 C 0.265 3.735 8 O -0.397 6.397 9 N -0.296 5.296 10 C -0.063 4.063 11 C -0.112 4.112 12 C -0.198 4.198 13 C 0.093 3.907 14 O -0.079 6.079 15 C -0.468 4.468 16 H 0.109 0.891 17 C -0.165 4.165 18 N -0.498 5.498 19 Si 0.766 3.234 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.195 1.195 23 C -0.241 4.241 24 C -0.084 4.084 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.229 0.771 36 H 0.242 0.758 37 H 0.133 0.867 38 H 0.140 0.860 39 H 0.080 0.920 40 H 0.148 0.852 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.537 -19.894 0.401 22.066 hybrid contribution -0.582 0.799 0.766 1.250 sum -10.119 -19.096 1.167 21.642 Atomic orbital electron populations 1.21782 0.95800 1.01524 1.01960 1.21517 0.95649 0.95952 1.02700 1.22090 0.92751 0.97902 1.04308 1.21458 0.94430 0.87941 0.88267 1.21787 1.02277 1.01205 0.94312 1.86546 1.76856 1.56611 1.15655 1.21441 0.82148 0.91527 0.78426 1.90719 1.55871 1.47677 1.45457 1.43227 1.17986 1.10114 1.58234 1.17303 0.92877 0.83156 1.12947 1.20371 0.93202 0.96268 1.01317 1.20002 0.99258 0.89996 1.10535 1.19412 0.91723 0.86556 0.93022 1.83973 1.37947 1.09941 1.76040 1.21291 0.90862 0.84176 1.50431 0.89076 1.25286 0.96945 0.97643 0.96611 1.70040 1.13452 1.20888 1.45375 0.85778 0.79198 0.79182 0.79286 1.19476 1.20267 1.19458 1.21103 0.95509 0.96974 1.10518 1.20825 0.99187 0.90956 0.97441 0.92743 0.92781 0.92672 0.91621 0.91334 0.91289 0.89685 0.90322 0.91361 0.90389 0.77064 0.75810 0.86709 0.86013 0.91959 0.85206 0.85855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.16 0.37 -0.70 16 2 C -0.12 -0.90 5.44 -26.73 -0.15 -1.05 16 3 C -0.13 -1.23 3.99 -26.73 -0.11 -1.34 16 4 C 0.12 1.22 1.01 -91.77 -0.09 1.13 16 5 C -0.14 -1.25 8.47 37.16 0.31 -0.93 16 6 O -0.55 -4.60 11.58 -35.23 -0.41 -5.01 16 7 C 0.48 6.66 6.54 -10.98 -0.07 6.59 16 8 O -0.52 -9.30 13.53 5.55 0.08 -9.23 16 9 N -0.65 -8.99 5.28 -9.82 -0.05 -9.04 16 10 C 0.03 0.53 6.30 -83.62 -0.53 0.00 16 11 C -0.09 -1.61 9.96 -39.41 -0.39 -2.01 16 12 C -0.18 -3.73 9.99 -39.42 -0.39 -4.13 16 13 C 0.15 3.59 6.65 -39.09 -0.26 3.33 16 14 O -0.18 -5.04 9.75 0.01 0.00 -5.04 16 15 C -0.39 -11.04 9.48 30.88 0.29 -10.75 16 16 H 0.09 2.39 5.20 -52.49 -0.27 2.12 16 17 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 18 N -0.86 -25.36 13.67 55.48 0.76 -24.60 16 19 Si 0.94 20.71 29.55 -169.99 -5.02 15.68 16 20 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 21 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 22 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 23 C -0.22 -5.03 9.16 -39.42 -0.36 -5.39 16 24 C -0.06 -1.30 8.69 -39.42 -0.34 -1.64 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.47 6.43 -51.93 -0.33 0.13 16 29 H 0.07 0.50 7.68 -51.93 -0.40 0.10 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.90 7.87 -51.93 -0.41 0.50 16 32 H 0.08 0.59 6.43 -51.93 -0.33 0.25 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.38 2.22 9.04 45.56 0.41 2.64 16 36 H 0.41 4.42 8.19 -40.82 -0.33 4.09 16 37 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 38 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 39 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.13 2.96 5.63 -52.48 -0.30 2.67 16 41 H 0.12 2.46 6.23 -52.49 -0.33 2.13 16 LS Contribution 341.72 15.07 5.15 5.15 Total: -1.00 -32.77 341.72 -6.12 -38.89 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -4.81 Total: 9.07 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: -1.81 Total: -15.88 kcal Atomic # 7 Polarization: -34.34 SS G_CDS: 0.71 Total: -33.64 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -0.33 Total: -19.27 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.77 -6.12 -38.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319483122.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.039 kcal (2) G-P(sol) polarization free energy of solvation -32.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds