Wall clock time and date at job start Tue Mar 31 2020 07:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47053 * 2 1 4 4 C 1.53002 * 109.47054 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47261 * 59.99280 * 4 3 2 6 6 O 1.42904 * 109.46379 * 299.99678 * 4 3 2 7 7 C 1.50700 * 109.46848 * 179.97438 * 4 3 2 8 8 O 1.21283 * 120.00041 * 334.99440 * 7 4 3 9 9 N 1.34782 * 119.99360 * 154.99454 * 7 4 3 10 10 C 1.39995 * 119.99338 * 175.49379 * 9 7 4 11 11 C 1.38924 * 119.99806 * 214.84692 * 10 9 7 12 12 C 1.38007 * 119.99531 * 179.79349 * 11 10 9 13 13 C 1.38914 * 119.99935 * 0.46766 * 12 11 10 14 14 O 1.35773 * 119.99636 * 179.76696 * 13 12 11 15 15 C 1.34818 * 117.00268 * 185.35893 * 14 13 12 16 16 H 1.08002 * 119.99441 * 354.96924 * 15 14 13 17 17 C 1.38627 * 120.00452 * 174.96053 * 15 14 13 18 18 N 1.31580 * 119.99649 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00121 * 180.02562 * 17 15 14 20 20 H 1.48490 * 109.47254 * 60.00143 * 19 17 15 21 21 H 1.48500 * 109.46963 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46823 * 300.00120 * 19 17 15 23 23 C 1.38903 * 120.00321 * 359.78886 * 13 12 11 24 24 C 1.38007 * 120.00338 * 359.97438 * 23 13 12 25 25 H 1.08997 * 109.47261 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47230 * 300.00129 * 1 2 3 27 27 H 1.09004 * 109.47258 * 60.00010 * 1 2 3 28 28 H 1.08992 * 109.46947 * 239.99756 * 2 1 3 29 29 H 1.08999 * 109.46823 * 119.99823 * 2 1 3 30 30 H 1.08997 * 109.47360 * 59.99578 * 3 2 1 31 31 H 1.09000 * 109.46583 * 300.00104 * 3 2 1 32 32 H 1.08997 * 109.47477 * 300.00474 * 5 4 3 33 33 H 1.09003 * 109.46944 * 179.97438 * 5 4 3 34 34 H 1.09004 * 109.46730 * 60.00386 * 5 4 3 35 35 H 0.96698 * 114.00334 * 299.99845 * 6 4 3 36 36 H 0.97000 * 120.00242 * 355.50382 * 9 7 4 37 37 H 1.07990 * 120.00267 * 0.02612 * 11 10 9 38 38 H 1.07997 * 119.99976 * 180.23045 * 12 11 10 39 39 H 0.97000 * 119.99410 * 179.97438 * 18 17 15 40 40 H 1.08004 * 119.99811 * 179.97438 * 23 13 12 41 41 H 1.07998 * 119.99637 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0795 0.7213 -1.2501 6 8 4.0467 0.7687 1.1660 7 6 4.0723 2.8633 -0.0013 8 8 3.3768 3.7522 -0.4452 9 7 5.2945 3.1462 0.4916 10 6 5.7995 4.4490 0.4054 11 6 7.1586 4.6552 0.2049 12 6 7.6558 5.9395 0.1157 13 6 6.7987 7.0261 0.2362 14 8 7.2886 8.2896 0.1532 15 6 6.4249 9.2977 0.3887 16 1 5.3784 9.0854 0.5501 17 6 6.8802 10.6066 0.4237 18 7 8.1552 10.8651 0.2267 19 14 5.6836 12.0032 0.7508 20 1 5.0471 11.8092 2.0783 21 1 6.4151 13.2954 0.7362 22 1 4.6372 12.0154 -0.3029 23 6 5.4406 6.8199 0.4420 24 6 4.9425 5.5356 0.5263 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6766 1.9562 -0.8900 32 1 3.7162 -0.3063 -1.2501 33 1 5.1696 0.7217 -1.2507 34 1 3.7158 1.2353 -2.1399 35 1 3.7617 1.1721 1.9973 36 1 5.8241 2.4470 0.9057 37 1 7.8255 3.8106 0.1150 38 1 8.7118 6.0999 -0.0440 39 1 8.4736 11.7811 0.2509 40 1 4.7743 7.6647 0.5361 41 1 3.8866 5.3754 0.6868 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319483122.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:44 Heat of formation + Delta-G solvation = -120.709211 kcal Electronic energy + Delta-G solvation = -23088.697048 eV Core-core repulsion = 19547.162170 eV Total energy + Delta-G solvation = -3541.534878 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.84898 -40.60332 -38.87546 -37.88657 -35.65097 -34.92910 -34.16068 -32.10710 -31.85803 -29.62263 -27.74251 -27.35300 -25.24353 -23.94464 -23.01550 -21.78852 -21.01989 -20.03349 -19.37229 -18.72816 -18.08785 -16.92164 -16.59378 -16.37100 -16.21578 -16.13464 -15.61252 -15.51567 -15.28686 -14.71613 -14.57558 -14.30959 -14.15291 -13.58675 -13.46692 -13.35069 -13.24072 -13.21990 -13.06526 -12.71134 -12.70135 -12.59681 -12.45291 -12.15941 -11.90005 -11.61011 -11.42243 -11.38178 -11.07906 -10.60149 -10.44027 -9.86983 -8.65466 -8.48379 -6.15516 0.46236 0.51552 1.34065 1.41189 1.49804 1.51101 2.01241 2.17089 2.79355 3.10046 3.12608 3.46615 3.50572 3.71639 3.87640 4.06654 4.08781 4.25038 4.29619 4.45004 4.56146 4.62501 4.69742 4.72810 4.79397 4.83501 4.95954 5.02835 5.05287 5.09543 5.12799 5.27311 5.31415 5.38493 5.41019 5.49321 5.55550 5.67112 6.00123 6.11182 6.36223 6.65254 6.95956 7.14191 7.74749 8.74087 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.028120 B = 0.003011 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.505170 B = 9296.813975 C =10047.852191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.114 4.114 3 C -0.130 4.130 4 C 0.139 3.861 5 C -0.141 4.141 6 O -0.545 6.545 7 C 0.479 3.521 8 O -0.561 6.561 9 N -0.641 5.641 10 C 0.057 3.943 11 C -0.077 4.077 12 C -0.180 4.180 13 C 0.108 3.892 14 O -0.226 6.226 15 C -0.416 4.416 16 H 0.097 0.903 17 C -0.020 4.020 18 N -0.917 5.917 19 Si 1.016 2.984 20 H -0.258 1.258 21 H -0.269 1.269 22 H -0.260 1.260 23 C -0.229 4.229 24 C -0.075 4.075 25 H 0.065 0.935 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.394 0.606 36 H 0.426 0.574 37 H 0.165 0.835 38 H 0.129 0.871 39 H 0.274 0.726 40 H 0.117 0.883 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.735 -23.634 1.746 26.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.151 4.151 3 C -0.169 4.169 4 C 0.095 3.905 5 C -0.198 4.198 6 O -0.352 6.352 7 C 0.266 3.734 8 O -0.439 6.439 9 N -0.288 5.288 10 C -0.037 4.037 11 C -0.097 4.097 12 C -0.200 4.200 13 C 0.057 3.943 14 O -0.133 6.133 15 C -0.492 4.492 16 H 0.115 0.885 17 C -0.218 4.218 18 N -0.555 5.555 19 Si 0.835 3.165 20 H -0.182 1.182 21 H -0.193 1.193 22 H -0.185 1.185 23 C -0.249 4.249 24 C -0.095 4.095 25 H 0.084 0.916 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.117 0.883 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.245 0.755 36 H 0.265 0.735 37 H 0.182 0.818 38 H 0.147 0.853 39 H 0.083 0.917 40 H 0.135 0.865 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.600 -23.193 0.925 25.517 hybrid contribution -0.333 1.390 0.620 1.558 sum -10.933 -21.803 1.544 24.440 Atomic orbital electron populations 1.21793 0.95544 1.02183 1.01669 1.21484 0.95845 0.94458 1.03361 1.22081 0.92292 0.99127 1.03375 1.21291 0.94533 0.85154 0.89534 1.21851 1.02552 1.02077 0.93345 1.86550 1.76746 1.56085 1.15843 1.22344 0.81259 0.92979 0.76799 1.90717 1.56861 1.49396 1.46904 1.43206 1.18404 1.08795 1.58347 1.17458 0.92800 0.84488 1.08916 1.20786 0.93700 0.96276 0.98930 1.20333 0.99464 0.90446 1.09733 1.19935 0.93051 0.86310 0.95018 1.83937 1.38951 1.11351 1.79022 1.21736 0.91398 0.84979 1.51064 0.88530 1.26537 0.99000 1.00151 0.96064 1.70174 1.15752 1.21631 1.47974 0.84686 0.76739 0.75369 0.79674 1.18210 1.19284 1.18457 1.21106 0.94943 0.97863 1.11006 1.20907 0.99788 0.90764 0.98064 0.91610 0.92965 0.93155 0.90885 0.90629 0.91669 0.91347 0.88318 0.90995 0.91006 0.75543 0.73451 0.81777 0.85301 0.91732 0.86480 0.85595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.91 71.98 0.71 -1.09 16 2 C -0.11 -1.37 5.44 30.59 0.17 -1.20 16 3 C -0.13 -2.14 3.99 30.59 0.12 -2.02 16 4 C 0.14 2.33 1.01 -11.54 -0.01 2.32 16 5 C -0.14 -2.06 8.47 71.98 0.61 -1.45 16 6 O -0.54 -6.85 11.58 -148.98 -1.72 -8.57 16 7 C 0.48 12.10 6.54 87.66 0.57 12.68 16 8 O -0.56 -19.34 13.53 -3.04 -0.04 -19.38 16 9 N -0.64 -15.49 5.28 -303.37 -1.60 -17.09 16 10 C 0.06 1.90 6.30 38.16 0.24 2.14 16 11 C -0.08 -2.50 9.96 22.38 0.22 -2.27 16 12 C -0.18 -7.48 9.99 22.38 0.22 -7.25 16 13 C 0.11 5.45 6.65 22.59 0.15 5.60 16 14 O -0.23 -13.74 9.75 -22.87 -0.22 -13.96 16 15 C -0.42 -24.72 9.48 67.91 0.64 -24.08 16 16 H 0.10 5.37 5.20 -2.91 -0.02 5.35 16 17 C -0.02 -1.13 5.49 84.82 0.47 -0.67 16 18 N -0.92 -56.52 13.67 21.61 0.30 -56.23 16 19 Si 1.02 43.65 29.55 68.60 2.03 45.68 16 20 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 21 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 22 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 23 C -0.23 -10.76 9.16 22.37 0.20 -10.56 16 24 C -0.08 -3.02 8.69 22.38 0.19 -2.82 16 25 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 27 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.07 0.79 6.43 -2.39 -0.02 0.77 16 29 H 0.08 0.83 7.68 -2.39 -0.02 0.81 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.07 1.37 7.87 -2.39 -0.02 1.36 16 32 H 0.10 1.08 6.43 -2.39 -0.02 1.06 16 33 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.39 3.00 9.04 -74.06 -0.67 2.33 16 36 H 0.43 7.26 8.19 -92.71 -0.76 6.50 16 37 H 0.16 3.75 8.06 -2.92 -0.02 3.72 16 38 H 0.13 5.10 8.06 -2.91 -0.02 5.07 16 39 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 40 H 0.12 5.66 5.63 -2.91 -0.02 5.65 16 41 H 0.13 5.00 6.23 -2.91 -0.02 4.98 16 Total: -1.00 -75.72 341.72 2.89 -72.82 By element: Atomic # 1 Polarization: 27.77 SS G_CDS: -0.36 Total: 27.41 kcal Atomic # 6 Polarization: -35.20 SS G_CDS: 4.52 Total: -30.68 kcal Atomic # 7 Polarization: -72.01 SS G_CDS: -1.30 Total: -73.31 kcal Atomic # 8 Polarization: -39.93 SS G_CDS: -1.99 Total: -41.92 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -75.72 2.89 -72.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319483122.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.887 kcal (2) G-P(sol) polarization free energy of solvation -75.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds