Wall clock time and date at job start Tue Mar 31 2020 07:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47383 * 2 1 4 4 C 1.53007 * 109.47001 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.46869 * 305.00218 * 4 3 2 6 6 O 1.42904 * 109.47125 * 65.00046 * 4 3 2 7 7 C 1.53002 * 109.46761 * 184.99930 * 4 3 2 8 8 C 1.50706 * 109.46595 * 174.99870 * 7 4 3 9 9 O 1.21287 * 120.00143 * 0.02562 * 8 7 4 10 10 N 1.34774 * 119.99455 * 179.97438 * 8 7 4 11 11 C 1.39997 * 119.99925 * 185.21459 * 10 8 7 12 12 C 1.38914 * 120.00207 * 213.40306 * 11 10 8 13 13 C 1.38009 * 119.99913 * 179.75990 * 12 11 10 14 14 C 1.38906 * 119.99514 * 0.48959 * 13 12 11 15 15 O 1.35787 * 119.99463 * 179.74208 * 14 13 12 16 16 C 1.34809 * 117.00092 * 185.93353 * 15 14 13 17 17 H 1.08005 * 119.99874 * 5.40784 * 16 15 14 18 18 C 1.38630 * 120.00042 * 185.40337 * 16 15 14 19 19 N 1.31577 * 119.99925 * 180.02562 * 18 16 15 20 20 Si 1.86790 * 120.00017 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47244 * 89.99573 * 20 18 16 22 22 H 1.48503 * 109.47013 * 209.99667 * 20 18 16 23 23 H 1.48504 * 109.47240 * 329.99691 * 20 18 16 24 24 C 1.38899 * 120.00760 * 359.76675 * 14 13 12 25 25 C 1.38005 * 120.00282 * 359.97438 * 24 14 13 26 26 H 1.08997 * 109.47435 * 59.99558 * 1 2 3 27 27 H 1.08999 * 109.47702 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.46759 * 299.99774 * 1 2 3 29 29 H 1.09009 * 109.46759 * 240.00226 * 2 1 3 30 30 H 1.08997 * 109.47435 * 120.00442 * 2 1 3 31 31 H 1.08993 * 109.46938 * 60.00713 * 3 2 1 32 32 H 1.09006 * 109.47123 * 300.00268 * 3 2 1 33 33 H 0.96700 * 114.00037 * 59.99958 * 6 4 3 34 34 H 1.08990 * 109.47135 * 55.00291 * 7 4 3 35 35 H 1.08999 * 109.47170 * 295.00073 * 7 4 3 36 36 H 0.96997 * 120.00576 * 5.21467 * 10 8 7 37 37 H 1.07998 * 120.00278 * 359.97183 * 12 11 10 38 38 H 1.07999 * 120.00124 * 180.21122 * 13 12 11 39 39 H 0.96995 * 119.99970 * 180.02562 * 19 18 16 40 40 H 1.08002 * 120.00448 * 179.97438 * 24 14 13 41 41 H 1.08003 * 120.00336 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9337 0.8527 0.8409 6 8 4.0459 0.8731 -1.2220 7 6 4.0802 2.8794 0.1251 8 6 5.5822 2.8702 0.2480 9 8 6.1852 1.8180 0.2357 10 7 6.2552 4.0314 0.3705 11 6 7.6552 4.0319 0.3748 12 6 8.3471 4.9627 1.1393 13 6 9.7272 4.9600 1.1474 14 6 10.4243 4.0329 0.3832 15 8 11.7821 4.0336 0.3871 16 6 12.3971 3.1920 -0.4678 17 1 11.8149 2.6210 -1.1760 18 6 13.7767 3.0595 -0.4381 19 7 14.3769 2.2384 -1.2729 20 14 14.7835 4.0466 0.7871 21 1 14.9306 3.2717 2.0453 22 1 16.1263 4.3226 0.2159 23 1 14.0942 5.3302 1.0741 24 6 9.7325 3.1055 -0.3854 25 6 8.3525 3.1048 -0.3895 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 1.8933 -0.5139 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.6768 1.9562 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.7602 1.3477 -2.0147 34 1 3.6460 3.3428 1.0108 35 1 3.7914 3.4461 -0.7601 36 1 5.7698 4.8668 0.4556 37 1 7.8051 5.6864 1.7300 38 1 10.2651 5.6815 1.7445 39 1 15.3422 2.1454 -1.2518 40 1 10.2746 2.3850 -0.9800 41 1 7.8146 2.3839 -0.9874 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319620885.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:32 Heat of formation + Delta-G solvation = -100.983064 kcal Electronic energy + Delta-G solvation = -22550.766830 eV Core-core repulsion = 19010.087342 eV Total energy + Delta-G solvation = -3540.679488 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.28379 -38.96490 -37.91076 -36.48919 -34.38402 -33.96277 -32.31928 -31.53512 -30.27209 -28.57409 -27.15950 -25.09779 -23.12517 -22.31330 -21.50387 -21.17970 -20.00170 -18.12805 -17.57139 -16.97104 -16.72324 -16.52895 -16.03105 -15.30451 -14.72579 -14.40030 -14.20037 -14.02247 -13.88380 -13.79809 -13.66832 -13.46085 -12.74868 -12.52098 -12.36705 -12.23787 -12.12587 -11.94418 -11.66813 -11.58672 -11.55343 -11.01645 -10.96128 -10.91719 -10.74889 -10.23100 -10.17647 -9.71332 -9.57131 -9.27839 -8.73710 -8.27155 -7.02885 -6.38698 -4.04328 2.01038 2.12609 2.87003 3.22606 3.23948 3.28144 3.41849 4.16519 4.25861 4.36137 4.46207 4.53262 4.68218 4.79999 4.88412 4.88903 5.03558 5.11316 5.15290 5.23179 5.29279 5.43604 5.53620 5.56658 5.66088 5.71753 5.75745 5.97986 6.02015 6.10208 6.12269 6.26769 6.61219 6.77483 6.91887 7.13556 7.31696 7.53748 7.57462 7.70092 7.81788 8.05280 8.39140 8.96323 9.58289 10.69004 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.035574 B = 0.002617 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.903549 B =10695.905769 C =11273.965547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.151 4.151 4 C 0.122 3.878 5 H 0.105 0.895 6 O -0.543 6.543 7 C -0.174 4.174 8 C 0.502 3.498 9 O -0.506 6.506 10 N -0.667 5.667 11 C 0.047 3.953 12 C -0.098 4.098 13 C -0.177 4.177 14 C 0.150 3.850 15 O -0.217 6.217 16 C -0.388 4.388 17 H 0.106 0.894 18 C 0.062 3.938 19 N -0.879 5.879 20 Si 0.906 3.094 21 H -0.274 1.274 22 H -0.282 1.282 23 H -0.260 1.260 24 C -0.204 4.204 25 C -0.067 4.067 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.366 0.634 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.400 0.600 37 H 0.116 0.884 38 H 0.121 0.879 39 H 0.279 0.721 40 H 0.137 0.863 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.664 3.526 2.802 26.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.189 4.189 4 C 0.062 3.938 5 H 0.123 0.877 6 O -0.347 6.347 7 C -0.215 4.215 8 C 0.289 3.711 9 O -0.380 6.380 10 N -0.313 5.313 11 C -0.045 4.045 12 C -0.119 4.119 13 C -0.197 4.197 14 C 0.097 3.903 15 O -0.122 6.122 16 C -0.463 4.463 17 H 0.124 0.876 18 C -0.141 4.141 19 N -0.517 5.517 20 Si 0.732 3.268 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.184 1.184 24 C -0.224 4.224 25 C -0.087 4.087 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.212 0.788 34 H 0.118 0.882 35 H 0.114 0.886 36 H 0.234 0.766 37 H 0.134 0.866 38 H 0.139 0.861 39 H 0.089 0.911 40 H 0.154 0.846 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -24.597 2.340 3.235 24.919 hybrid contribution -0.050 1.203 0.108 1.208 sum -24.647 3.543 3.343 25.124 Atomic orbital electron populations 1.21788 0.96024 1.01641 1.01547 1.21460 0.95353 0.96266 1.02933 1.22358 0.95823 0.98048 1.02687 1.21700 0.91510 0.91497 0.89072 0.87702 1.86763 1.76820 1.56240 1.14853 1.22485 0.93342 1.00818 1.04823 1.20546 0.89651 0.83829 0.77112 1.90786 1.69685 1.30535 1.47011 1.43325 1.05282 1.09265 1.73427 1.17311 0.81434 1.02372 1.03431 1.20339 0.93346 0.99513 0.98680 1.19979 0.92751 1.01864 1.05110 1.19150 0.83829 0.93340 0.93945 1.83580 1.14362 1.57551 1.56695 1.20769 0.91319 1.21216 1.13033 0.87631 1.24478 0.95809 0.96380 0.97455 1.69660 1.10816 1.34962 1.36247 0.86166 0.78734 0.81245 0.80653 1.19924 1.20810 1.18364 1.21221 0.93667 1.02404 1.05099 1.20789 0.93492 0.97569 0.96823 0.92887 0.92746 0.92924 0.91163 0.91910 0.91046 0.91596 0.78757 0.88206 0.88638 0.76560 0.86639 0.86095 0.91071 0.84575 0.85864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.91 37.16 0.37 -0.53 16 2 C -0.12 -0.87 5.83 -26.73 -0.16 -1.03 16 3 C -0.15 -0.95 4.89 -26.73 -0.13 -1.08 16 4 C 0.12 1.10 2.51 -26.73 -0.07 1.04 16 5 H 0.11 1.18 7.96 -51.93 -0.41 0.76 16 6 O -0.54 -6.08 12.11 -49.66 -0.60 -6.68 16 7 C -0.17 -1.38 5.39 -27.88 -0.15 -1.53 16 8 C 0.50 6.72 7.45 -10.98 -0.08 6.64 16 9 O -0.51 -9.35 13.12 -8.88 -0.12 -9.47 16 10 N -0.67 -8.58 5.34 -9.82 -0.05 -8.64 16 11 C 0.05 0.81 6.28 -83.63 -0.52 0.29 16 12 C -0.10 -1.64 9.96 -39.42 -0.39 -2.03 16 13 C -0.18 -3.48 9.99 -39.42 -0.39 -3.88 16 14 C 0.15 3.52 6.65 -39.09 -0.26 3.26 16 15 O -0.22 -5.79 8.58 -0.01 0.00 -5.79 16 16 C -0.39 -11.12 9.90 30.88 0.31 -10.82 16 17 H 0.11 3.11 5.53 -52.48 -0.29 2.82 16 18 C 0.06 1.76 5.49 -17.52 -0.10 1.67 16 19 N -0.88 -25.78 13.96 55.48 0.77 -25.00 16 20 Si 0.91 21.90 28.61 -169.99 -4.86 17.04 16 21 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.26 -6.24 7.11 56.52 0.40 -5.84 16 24 C -0.20 -4.67 9.12 -39.42 -0.36 -5.03 16 25 C -0.07 -1.35 8.65 -39.41 -0.34 -1.70 16 26 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.28 8.14 -51.92 -0.42 -0.14 16 29 H 0.07 0.57 7.82 -51.92 -0.41 0.17 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.37 2.65 9.05 45.56 0.41 3.06 16 34 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.40 3.50 8.82 -40.82 -0.36 3.14 16 37 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 38 H 0.12 2.17 8.06 -52.49 -0.42 1.75 16 39 H 0.28 7.55 8.31 -40.82 -0.34 7.21 16 40 H 0.14 3.29 5.71 -52.49 -0.30 2.99 16 41 H 0.12 2.53 6.43 -52.48 -0.34 2.19 16 LS Contribution 345.93 15.07 5.21 5.21 Total: -1.00 -34.25 345.93 -6.98 -41.24 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -5.06 Total: 6.81 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: -2.28 Total: -14.72 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: 0.72 Total: -33.64 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.72 Total: -21.94 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.86 Total: 17.04 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.25 -6.98 -41.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319620885.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.747 kcal (2) G-P(sol) polarization free energy of solvation -34.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds