Wall clock time and date at job start Tue Mar 31 2020 07:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47383 * 2 1 4 4 C 1.53007 * 109.47001 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.46869 * 305.00218 * 4 3 2 6 6 O 1.42904 * 109.47125 * 65.00046 * 4 3 2 7 7 C 1.53002 * 109.46761 * 184.99930 * 4 3 2 8 8 C 1.50706 * 109.46595 * 174.99870 * 7 4 3 9 9 O 1.21287 * 120.00143 * 0.02562 * 8 7 4 10 10 N 1.34774 * 119.99455 * 179.97438 * 8 7 4 11 11 C 1.39997 * 119.99925 * 185.21459 * 10 8 7 12 12 C 1.38914 * 120.00207 * 213.40306 * 11 10 8 13 13 C 1.38009 * 119.99913 * 179.75990 * 12 11 10 14 14 C 1.38906 * 119.99514 * 0.48959 * 13 12 11 15 15 O 1.35787 * 119.99463 * 179.74208 * 14 13 12 16 16 C 1.34809 * 117.00092 * 185.93353 * 15 14 13 17 17 H 1.08005 * 119.99874 * 5.40784 * 16 15 14 18 18 C 1.38630 * 120.00042 * 185.40337 * 16 15 14 19 19 N 1.31577 * 119.99925 * 180.02562 * 18 16 15 20 20 Si 1.86790 * 120.00017 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47244 * 89.99573 * 20 18 16 22 22 H 1.48503 * 109.47013 * 209.99667 * 20 18 16 23 23 H 1.48504 * 109.47240 * 329.99691 * 20 18 16 24 24 C 1.38899 * 120.00760 * 359.76675 * 14 13 12 25 25 C 1.38005 * 120.00282 * 359.97438 * 24 14 13 26 26 H 1.08997 * 109.47435 * 59.99558 * 1 2 3 27 27 H 1.08999 * 109.47702 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.46759 * 299.99774 * 1 2 3 29 29 H 1.09009 * 109.46759 * 240.00226 * 2 1 3 30 30 H 1.08997 * 109.47435 * 120.00442 * 2 1 3 31 31 H 1.08993 * 109.46938 * 60.00713 * 3 2 1 32 32 H 1.09006 * 109.47123 * 300.00268 * 3 2 1 33 33 H 0.96700 * 114.00037 * 59.99958 * 6 4 3 34 34 H 1.08990 * 109.47135 * 55.00291 * 7 4 3 35 35 H 1.08999 * 109.47170 * 295.00073 * 7 4 3 36 36 H 0.96997 * 120.00576 * 5.21467 * 10 8 7 37 37 H 1.07998 * 120.00278 * 359.97183 * 12 11 10 38 38 H 1.07999 * 120.00124 * 180.21122 * 13 12 11 39 39 H 0.96995 * 119.99970 * 180.02562 * 19 18 16 40 40 H 1.08002 * 120.00448 * 179.97438 * 24 14 13 41 41 H 1.08003 * 120.00336 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9337 0.8527 0.8409 6 8 4.0459 0.8731 -1.2220 7 6 4.0802 2.8794 0.1251 8 6 5.5822 2.8702 0.2480 9 8 6.1852 1.8180 0.2357 10 7 6.2552 4.0314 0.3705 11 6 7.6552 4.0319 0.3748 12 6 8.3471 4.9627 1.1393 13 6 9.7272 4.9600 1.1474 14 6 10.4243 4.0329 0.3832 15 8 11.7821 4.0336 0.3871 16 6 12.3971 3.1920 -0.4678 17 1 11.8149 2.6210 -1.1760 18 6 13.7767 3.0595 -0.4381 19 7 14.3769 2.2384 -1.2729 20 14 14.7835 4.0466 0.7871 21 1 14.9306 3.2717 2.0453 22 1 16.1263 4.3226 0.2159 23 1 14.0942 5.3302 1.0741 24 6 9.7325 3.1055 -0.3854 25 6 8.3525 3.1048 -0.3895 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 1.8933 -0.5139 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.6768 1.9562 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.7602 1.3477 -2.0147 34 1 3.6460 3.3428 1.0108 35 1 3.7914 3.4461 -0.7601 36 1 5.7698 4.8668 0.4556 37 1 7.8051 5.6864 1.7300 38 1 10.2651 5.6815 1.7445 39 1 15.3422 2.1454 -1.2518 40 1 10.2746 2.3850 -0.9800 41 1 7.8146 2.3839 -0.9874 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319620885.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:31 Heat of formation + Delta-G solvation = -126.116501 kcal Electronic energy + Delta-G solvation = -22551.856697 eV Core-core repulsion = 19010.087342 eV Total energy + Delta-G solvation = -3541.769356 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.54940 -40.53061 -38.92204 -37.95489 -35.37107 -34.97445 -34.38068 -32.36326 -31.88502 -29.89050 -28.09315 -26.99786 -24.30650 -23.64752 -22.55644 -22.06619 -21.19802 -19.96096 -19.26498 -18.32592 -17.91035 -17.38189 -16.89266 -16.59873 -16.07166 -15.73700 -15.67134 -15.47643 -15.19537 -14.96425 -14.76355 -14.42542 -14.20187 -14.12537 -14.05231 -13.41061 -13.32394 -12.91902 -12.71450 -12.62926 -12.53679 -12.50149 -12.15389 -12.00067 -11.62575 -11.49322 -11.46022 -11.18488 -10.97023 -10.73237 -10.56497 -9.87682 -8.65491 -8.50240 -6.22583 0.46913 0.50161 1.31679 1.36490 1.53112 1.73927 2.17105 2.28559 2.75624 3.08541 3.10816 3.52284 3.69147 3.77527 4.04967 4.08130 4.12249 4.22284 4.33328 4.42515 4.45275 4.59580 4.67034 4.69473 4.76597 4.78013 4.97043 5.02871 5.04872 5.13385 5.18814 5.29856 5.37238 5.42239 5.49703 5.50195 5.59558 5.73606 5.90950 6.20111 6.60527 6.83274 6.97211 7.34280 7.56135 8.61782 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.035574 B = 0.002617 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.903549 B =10695.905769 C =11273.965547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.127 4.127 3 C -0.139 4.139 4 C 0.118 3.882 5 H 0.073 0.927 6 O -0.576 6.576 7 C -0.158 4.158 8 C 0.497 3.503 9 O -0.564 6.564 10 N -0.654 5.654 11 C 0.074 3.926 12 C -0.082 4.082 13 C -0.166 4.166 14 C 0.109 3.891 15 O -0.240 6.240 16 C -0.400 4.400 17 H 0.073 0.927 18 C 0.005 3.995 19 N -0.926 5.926 20 Si 0.977 3.023 21 H -0.268 1.268 22 H -0.267 1.267 23 H -0.257 1.257 24 C -0.223 4.223 25 C -0.083 4.083 26 H 0.060 0.940 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.382 0.618 34 H 0.139 0.861 35 H 0.131 0.869 36 H 0.428 0.572 37 H 0.175 0.825 38 H 0.145 0.855 39 H 0.285 0.715 40 H 0.102 0.898 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.172 6.908 4.810 30.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C -0.176 4.176 4 C 0.058 3.942 5 H 0.091 0.909 6 O -0.383 6.383 7 C -0.198 4.198 8 C 0.287 3.713 9 O -0.441 6.441 10 N -0.302 5.302 11 C -0.020 4.020 12 C -0.101 4.101 13 C -0.186 4.186 14 C 0.059 3.941 15 O -0.148 6.148 16 C -0.476 4.476 17 H 0.091 0.909 18 C -0.193 4.193 19 N -0.566 5.566 20 Si 0.799 3.201 21 H -0.193 1.193 22 H -0.191 1.191 23 H -0.180 1.180 24 C -0.243 4.243 25 C -0.104 4.104 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.230 0.770 34 H 0.157 0.843 35 H 0.149 0.851 36 H 0.267 0.733 37 H 0.192 0.808 38 H 0.163 0.837 39 H 0.094 0.906 40 H 0.120 0.880 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -28.202 5.768 5.240 29.259 hybrid contribution 0.631 0.117 -0.524 0.828 sum -27.571 5.885 4.716 28.584 Atomic orbital electron populations 1.21758 0.94776 1.01774 1.02342 1.21471 0.96424 0.97008 1.01521 1.22255 0.93280 0.97517 1.04561 1.21730 0.93375 0.91696 0.87380 0.90915 1.86726 1.77638 1.57601 1.16295 1.22513 0.88441 1.00627 1.08217 1.21654 0.91954 0.82742 0.74975 1.90792 1.71327 1.32746 1.49221 1.43303 1.03207 1.10861 1.72813 1.17478 0.83909 1.00049 1.00520 1.20877 0.92176 0.99484 0.97592 1.20425 0.94136 1.00504 1.03517 1.19690 0.83087 0.95236 0.96042 1.83513 1.15911 1.58120 1.57231 1.20652 0.91811 1.21600 1.13535 0.90908 1.25381 0.96742 0.97617 0.99514 1.69756 1.11432 1.37084 1.38357 0.85126 0.77386 0.79511 0.78107 1.19257 1.19116 1.18045 1.21099 0.94954 1.02532 1.05671 1.20762 0.92414 0.98972 0.98211 0.92090 0.93083 0.92023 0.92870 0.93219 0.89067 0.89582 0.77011 0.84336 0.85057 0.73291 0.80799 0.83731 0.90552 0.87978 0.86831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.91 71.98 0.71 -0.73 16 2 C -0.13 -1.65 5.83 30.59 0.18 -1.47 16 3 C -0.14 -1.29 4.89 30.60 0.15 -1.14 16 4 C 0.12 1.89 2.51 30.60 0.08 1.97 16 5 H 0.07 1.62 7.96 -2.39 -0.02 1.60 16 6 O -0.58 -12.57 12.11 -135.19 -1.64 -14.21 16 7 C -0.16 -1.79 5.39 29.85 0.16 -1.63 16 8 C 0.50 11.92 7.45 87.66 0.65 12.57 16 9 O -0.56 -20.74 13.12 10.74 0.14 -20.59 16 10 N -0.65 -14.00 5.34 -303.38 -1.62 -15.62 16 11 C 0.07 2.37 6.28 38.16 0.24 2.61 16 12 C -0.08 -2.34 9.96 22.38 0.22 -2.12 16 13 C -0.17 -6.15 9.99 22.38 0.22 -5.92 16 14 C 0.11 5.26 6.65 22.59 0.15 5.41 16 15 O -0.24 -13.36 8.58 -22.94 -0.20 -13.56 16 16 C -0.40 -24.51 9.90 67.91 0.67 -23.84 16 17 H 0.07 4.78 5.53 -2.91 -0.02 4.76 16 18 C 0.01 0.32 5.49 84.82 0.47 0.79 16 19 N -0.93 -57.14 13.96 21.61 0.30 -56.84 16 20 Si 0.98 46.25 28.61 68.60 1.96 48.22 16 21 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 22 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 23 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 24 C -0.22 -10.86 9.12 22.37 0.20 -10.66 16 25 C -0.08 -3.45 8.65 22.38 0.19 -3.26 16 26 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.06 0.49 8.14 -2.38 -0.02 0.48 16 29 H 0.05 0.86 7.82 -2.38 -0.02 0.84 16 30 H 0.05 0.75 8.14 -2.39 -0.02 0.74 16 31 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.09 0.50 8.14 -2.38 -0.02 0.48 16 33 H 0.38 5.00 9.05 -74.06 -0.67 4.33 16 34 H 0.14 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.43 4.74 8.82 -92.71 -0.82 3.92 16 37 H 0.17 3.10 8.06 -2.91 -0.02 3.08 16 38 H 0.14 4.66 8.06 -2.91 -0.02 4.64 16 39 H 0.28 16.06 8.31 -92.71 -0.77 15.29 16 40 H 0.10 5.57 5.71 -2.91 -0.02 5.56 16 41 H 0.11 4.89 6.43 -2.91 -0.02 4.88 16 Total: -1.00 -83.25 345.93 2.83 -80.42 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: -0.43 Total: 19.60 kcal Atomic # 6 Polarization: -31.73 SS G_CDS: 4.30 Total: -27.42 kcal Atomic # 7 Polarization: -71.14 SS G_CDS: -1.32 Total: -72.46 kcal Atomic # 8 Polarization: -46.67 SS G_CDS: -1.69 Total: -48.36 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 1.96 Total: 48.22 kcal Total: -83.25 2.83 -80.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319620885.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.694 kcal (2) G-P(sol) polarization free energy of solvation -83.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds