Wall clock time and date at job start Tue Mar 31 2020 07:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47144 * 2 1 4 4 C 1.53005 * 109.47321 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.46835 * 54.99645 * 4 3 2 6 6 O 1.42898 * 109.46876 * 294.99580 * 4 3 2 7 7 C 1.53006 * 109.47044 * 174.99884 * 4 3 2 8 8 C 1.50695 * 109.46780 * 184.99949 * 7 4 3 9 9 O 1.21291 * 120.00294 * 359.97438 * 8 7 4 10 10 N 1.34778 * 119.99987 * 179.97438 * 8 7 4 11 11 C 1.39992 * 120.00187 * 175.48997 * 10 8 7 12 12 C 1.38918 * 120.00226 * 215.12794 * 11 10 8 13 13 C 1.38005 * 119.99770 * 179.97438 * 12 11 10 14 14 C 1.38912 * 120.00135 * 0.02562 * 13 12 11 15 15 O 1.35776 * 119.99839 * 179.97438 * 14 13 12 16 16 C 1.34817 * 116.99769 * 5.34289 * 15 14 13 17 17 H 1.07997 * 120.00581 * 354.96878 * 16 15 14 18 18 C 1.38633 * 119.99861 * 174.96095 * 16 15 14 19 19 N 1.31574 * 119.99853 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00107 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47230 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47313 * 120.00314 * 20 18 16 23 23 H 1.48500 * 109.47654 * 240.00213 * 20 18 16 24 24 C 1.38906 * 120.00330 * 0.23504 * 14 13 12 25 25 C 1.38004 * 120.00015 * 359.48740 * 24 14 13 26 26 H 1.09003 * 109.47201 * 60.00514 * 1 2 3 27 27 H 1.08996 * 109.46984 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47426 * 300.00595 * 1 2 3 29 29 H 1.08995 * 109.47279 * 239.99808 * 2 1 3 30 30 H 1.09003 * 109.47201 * 119.99486 * 2 1 3 31 31 H 1.09002 * 109.47445 * 59.99416 * 3 2 1 32 32 H 1.09001 * 109.47084 * 299.99511 * 3 2 1 33 33 H 0.96704 * 114.00171 * 300.00420 * 6 4 3 34 34 H 1.09001 * 109.47335 * 64.99821 * 7 4 3 35 35 H 1.08994 * 109.46921 * 304.99583 * 7 4 3 36 36 H 0.97000 * 119.99624 * 355.49429 * 10 8 7 37 37 H 1.08003 * 119.99996 * 359.95662 * 12 11 10 38 38 H 1.08003 * 119.99857 * 179.97438 * 13 12 11 39 39 H 0.96999 * 119.99891 * 179.97438 * 19 18 16 40 40 H 1.07996 * 120.00157 * 179.74131 * 24 14 13 41 41 H 1.07995 * 120.00198 * 180.25247 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8530 -0.8409 6 8 4.0458 0.8734 1.2220 7 6 4.0800 2.8796 -0.1251 8 6 5.5819 2.8706 -0.2480 9 8 6.1852 1.8184 -0.2357 10 7 6.2550 4.0317 -0.3715 11 6 7.6548 4.0308 -0.3907 12 6 8.3581 5.0774 0.1923 13 6 9.7380 5.0762 0.1738 14 6 10.4237 4.0287 -0.4281 15 8 11.7813 4.0278 -0.4467 16 6 12.4033 5.0133 0.2312 17 1 11.8251 5.8025 0.6885 18 6 13.7852 5.0134 0.3416 19 7 14.4898 4.0521 -0.2158 20 14 14.6470 6.3784 1.2815 21 1 13.6368 7.3303 1.8092 22 1 15.4135 5.7940 2.4113 23 1 15.5761 7.0958 0.3718 24 6 9.7204 2.9849 -1.0158 25 6 8.3406 2.9832 -0.9924 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.7600 1.3480 2.0147 34 1 3.7913 3.4464 0.7600 35 1 3.6458 3.3430 -1.0110 36 1 5.7694 4.8680 -0.4472 37 1 7.8250 5.8922 0.6596 38 1 10.2848 5.8901 0.6266 39 1 15.4567 4.0524 -0.1389 40 1 10.2535 2.1727 -1.4874 41 1 7.7938 2.1696 -1.4457 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319620887.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:33 Heat of formation + Delta-G solvation = -102.014732 kcal Electronic energy + Delta-G solvation = -22458.449827 eV Core-core repulsion = 18917.725603 eV Total energy + Delta-G solvation = -3540.724224 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.22673 -38.83256 -37.85337 -36.33748 -34.37748 -33.90878 -32.20420 -31.48504 -30.19166 -28.42348 -26.98961 -25.30514 -23.02655 -22.20468 -21.50877 -21.23030 -20.05923 -18.03921 -17.47840 -17.05452 -16.66644 -16.24407 -16.04558 -15.24775 -14.55566 -14.49630 -14.26925 -14.25693 -13.83246 -13.56241 -13.54524 -13.38961 -12.79087 -12.62282 -12.32446 -12.09640 -11.96150 -11.77935 -11.57046 -11.54563 -11.46016 -11.03262 -11.00978 -10.95722 -10.69564 -10.43312 -10.16922 -9.66552 -9.52387 -9.18936 -8.68922 -8.18393 -6.91005 -6.42963 -4.01058 2.12602 2.23307 2.88549 3.13398 3.14604 3.20034 3.29670 3.97991 4.18057 4.37544 4.50074 4.60157 4.68575 4.80743 4.89592 5.06272 5.11490 5.15739 5.24969 5.30418 5.35642 5.44119 5.53997 5.57599 5.71896 5.75732 5.81531 5.98482 6.02014 6.17195 6.25267 6.31104 6.83129 6.87910 7.01647 7.19192 7.24294 7.43129 7.54713 7.74777 7.81737 8.01649 8.43873 9.02420 9.73359 10.75149 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.047838 B = 0.002406 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.164518 B =11635.789238 C =11823.840400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.152 4.152 4 C 0.123 3.877 5 H 0.105 0.895 6 O -0.543 6.543 7 C -0.174 4.174 8 C 0.503 3.497 9 O -0.510 6.510 10 N -0.665 5.665 11 C 0.035 3.965 12 C -0.091 4.091 13 C -0.220 4.220 14 C 0.147 3.853 15 O -0.177 6.177 16 C -0.391 4.391 17 H 0.092 0.908 18 C 0.038 3.962 19 N -0.862 5.862 20 Si 0.941 3.059 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.179 4.179 25 C -0.067 4.067 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.366 0.634 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.400 0.600 37 H 0.109 0.891 38 H 0.131 0.869 39 H 0.269 0.731 40 H 0.121 0.879 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.169 0.190 0.780 25.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.189 4.189 4 C 0.063 3.937 5 H 0.123 0.877 6 O -0.347 6.347 7 C -0.215 4.215 8 C 0.289 3.711 9 O -0.384 6.384 10 N -0.311 5.311 11 C -0.057 4.057 12 C -0.112 4.112 13 C -0.240 4.240 14 C 0.093 3.907 15 O -0.081 6.081 16 C -0.467 4.467 17 H 0.110 0.890 18 C -0.166 4.166 19 N -0.497 5.497 20 Si 0.766 3.234 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.199 4.199 25 C -0.087 4.087 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.212 0.788 34 H 0.113 0.887 35 H 0.118 0.882 36 H 0.234 0.766 37 H 0.127 0.873 38 H 0.149 0.851 39 H 0.079 0.921 40 H 0.139 0.861 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -24.068 -1.236 0.261 24.101 hybrid contribution -0.143 1.790 0.844 1.984 sum -24.211 0.554 1.105 24.243 Atomic orbital electron populations 1.21788 0.96031 1.01627 1.01558 1.21458 0.95348 0.96280 1.02907 1.22363 0.95865 0.98024 1.02694 1.21692 0.91468 0.91525 0.89050 0.87710 1.86757 1.76838 1.56228 1.14858 1.22483 0.93447 1.00765 1.04797 1.20524 0.89616 0.83955 0.77010 1.90752 1.69515 1.30639 1.47502 1.43276 1.05412 1.09305 1.73062 1.17272 0.81263 0.99724 1.07446 1.20482 0.93832 0.97805 0.99049 1.20972 0.93417 1.01482 1.08155 1.19418 0.85065 0.92916 0.93317 1.83993 1.12598 1.48246 1.63227 1.21359 0.89952 1.03092 1.32342 0.89042 1.25296 0.95486 0.98364 0.97486 1.70059 1.06915 1.31322 1.41392 0.85643 0.79355 0.79496 0.78875 1.19144 1.20165 1.20176 1.20163 0.92914 0.99418 1.07399 1.20741 0.92998 0.97574 0.97401 0.92906 0.92757 0.92901 0.91909 0.91189 0.91617 0.91033 0.78769 0.88719 0.88209 0.76627 0.87266 0.85141 0.92081 0.86144 0.85357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.52 16 2 C -0.12 -0.87 5.83 -26.73 -0.16 -1.02 16 3 C -0.15 -0.95 4.89 -26.73 -0.13 -1.08 16 4 C 0.12 1.11 2.51 -26.73 -0.07 1.04 16 5 H 0.11 1.16 7.95 -51.93 -0.41 0.75 16 6 O -0.54 -6.14 12.11 -49.66 -0.60 -6.74 16 7 C -0.17 -1.41 5.38 -27.88 -0.15 -1.56 16 8 C 0.50 6.83 7.55 -10.99 -0.08 6.75 16 9 O -0.51 -9.36 12.86 -8.88 -0.11 -9.48 16 10 N -0.67 -8.92 5.34 -9.82 -0.05 -8.97 16 11 C 0.04 0.64 6.30 -83.62 -0.53 0.11 16 12 C -0.09 -1.66 9.96 -39.42 -0.39 -2.06 16 13 C -0.22 -4.80 9.16 -39.42 -0.36 -5.16 16 14 C 0.15 3.64 6.65 -39.08 -0.26 3.38 16 15 O -0.18 -5.14 9.76 0.00 0.00 -5.14 16 16 C -0.39 -11.01 9.48 30.88 0.29 -10.71 16 17 H 0.09 2.37 5.20 -52.49 -0.27 2.09 16 18 C 0.04 1.05 5.49 -17.52 -0.10 0.95 16 19 N -0.86 -25.55 13.67 55.48 0.76 -24.79 16 20 Si 0.94 20.62 29.55 -169.99 -5.02 15.59 16 21 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 22 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 23 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 24 C -0.18 -4.05 9.98 -39.42 -0.39 -4.44 16 25 C -0.07 -1.36 8.69 -39.41 -0.34 -1.70 16 26 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.57 7.82 -51.93 -0.41 0.16 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.37 2.72 9.05 45.56 0.41 3.13 16 34 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.40 3.77 8.82 -40.82 -0.36 3.41 16 37 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 38 H 0.13 2.80 5.63 -52.48 -0.30 2.51 16 39 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.12 2.65 8.06 -52.49 -0.42 2.23 16 41 H 0.13 2.55 6.23 -52.49 -0.33 2.23 16 LS Contribution 346.66 15.07 5.22 5.22 Total: -1.00 -34.98 346.66 -7.13 -42.11 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -5.02 Total: 8.23 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: -2.30 Total: -16.04 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: 0.71 Total: -33.76 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.72 Total: -21.36 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.98 -7.13 -42.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319620887.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.907 kcal (2) G-P(sol) polarization free energy of solvation -34.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds