Wall clock time and date at job start Tue Mar 31 2020 07:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47144 * 2 1 4 4 C 1.53005 * 109.47321 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.46835 * 54.99645 * 4 3 2 6 6 O 1.42898 * 109.46876 * 294.99580 * 4 3 2 7 7 C 1.53006 * 109.47044 * 174.99884 * 4 3 2 8 8 C 1.50695 * 109.46780 * 184.99949 * 7 4 3 9 9 O 1.21291 * 120.00294 * 359.97438 * 8 7 4 10 10 N 1.34778 * 119.99987 * 179.97438 * 8 7 4 11 11 C 1.39992 * 120.00187 * 175.48997 * 10 8 7 12 12 C 1.38918 * 120.00226 * 215.12794 * 11 10 8 13 13 C 1.38005 * 119.99770 * 179.97438 * 12 11 10 14 14 C 1.38912 * 120.00135 * 0.02562 * 13 12 11 15 15 O 1.35776 * 119.99839 * 179.97438 * 14 13 12 16 16 C 1.34817 * 116.99769 * 5.34289 * 15 14 13 17 17 H 1.07997 * 120.00581 * 354.96878 * 16 15 14 18 18 C 1.38633 * 119.99861 * 174.96095 * 16 15 14 19 19 N 1.31574 * 119.99853 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00107 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47230 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47313 * 120.00314 * 20 18 16 23 23 H 1.48500 * 109.47654 * 240.00213 * 20 18 16 24 24 C 1.38906 * 120.00330 * 0.23504 * 14 13 12 25 25 C 1.38004 * 120.00015 * 359.48740 * 24 14 13 26 26 H 1.09003 * 109.47201 * 60.00514 * 1 2 3 27 27 H 1.08996 * 109.46984 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47426 * 300.00595 * 1 2 3 29 29 H 1.08995 * 109.47279 * 239.99808 * 2 1 3 30 30 H 1.09003 * 109.47201 * 119.99486 * 2 1 3 31 31 H 1.09002 * 109.47445 * 59.99416 * 3 2 1 32 32 H 1.09001 * 109.47084 * 299.99511 * 3 2 1 33 33 H 0.96704 * 114.00171 * 300.00420 * 6 4 3 34 34 H 1.09001 * 109.47335 * 64.99821 * 7 4 3 35 35 H 1.08994 * 109.46921 * 304.99583 * 7 4 3 36 36 H 0.97000 * 119.99624 * 355.49429 * 10 8 7 37 37 H 1.08003 * 119.99996 * 359.95662 * 12 11 10 38 38 H 1.08003 * 119.99857 * 179.97438 * 13 12 11 39 39 H 0.96999 * 119.99891 * 179.97438 * 19 18 16 40 40 H 1.07996 * 120.00157 * 179.74131 * 24 14 13 41 41 H 1.07995 * 120.00198 * 180.25247 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8530 -0.8409 6 8 4.0458 0.8734 1.2220 7 6 4.0800 2.8796 -0.1251 8 6 5.5819 2.8706 -0.2480 9 8 6.1852 1.8184 -0.2357 10 7 6.2550 4.0317 -0.3715 11 6 7.6548 4.0308 -0.3907 12 6 8.3581 5.0774 0.1923 13 6 9.7380 5.0762 0.1738 14 6 10.4237 4.0287 -0.4281 15 8 11.7813 4.0278 -0.4467 16 6 12.4033 5.0133 0.2312 17 1 11.8251 5.8025 0.6885 18 6 13.7852 5.0134 0.3416 19 7 14.4898 4.0521 -0.2158 20 14 14.6470 6.3784 1.2815 21 1 13.6368 7.3303 1.8092 22 1 15.4135 5.7940 2.4113 23 1 15.5761 7.0958 0.3718 24 6 9.7204 2.9849 -1.0158 25 6 8.3406 2.9832 -0.9924 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.7600 1.3480 2.0147 34 1 3.7913 3.4464 0.7600 35 1 3.6458 3.3430 -1.0110 36 1 5.7694 4.8680 -0.4472 37 1 7.8250 5.8922 0.6596 38 1 10.2848 5.8901 0.6266 39 1 15.4567 4.0524 -0.1389 40 1 10.2535 2.1727 -1.4874 41 1 7.7938 2.1696 -1.4457 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319620887.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:33 Heat of formation + Delta-G solvation = -127.622426 kcal Electronic energy + Delta-G solvation = -22459.560260 eV Core-core repulsion = 18917.725603 eV Total energy + Delta-G solvation = -3541.834657 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.50380 -40.42984 -38.87090 -37.87067 -35.35206 -34.96088 -34.16475 -32.31218 -31.87407 -29.70402 -27.98949 -27.20159 -24.11205 -23.73316 -22.60459 -22.05468 -21.30365 -19.86946 -18.98073 -18.48928 -17.69762 -17.35201 -16.90112 -16.37266 -16.23507 -15.92659 -15.50648 -15.44099 -14.98648 -14.92240 -14.79043 -14.52041 -14.16666 -14.10991 -13.60662 -13.29074 -13.23971 -12.90526 -12.71199 -12.62971 -12.51706 -12.41913 -12.13485 -12.07836 -11.61184 -11.48280 -11.35301 -11.09542 -10.91544 -10.65843 -10.47985 -9.85098 -8.60471 -8.45647 -6.13366 0.51032 0.55667 1.36465 1.44438 1.55465 1.74902 2.17072 2.21546 2.82779 3.15307 3.51231 3.54598 3.71430 3.78324 4.05006 4.12619 4.13851 4.23016 4.34478 4.43328 4.48913 4.62617 4.69255 4.70755 4.77735 4.81645 4.98187 5.03707 5.07968 5.14394 5.19281 5.30622 5.31909 5.43395 5.47826 5.51119 5.57834 5.68593 6.02632 6.18719 6.62562 6.98349 6.98806 7.35598 7.79566 8.77934 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.047838 B = 0.002406 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.164518 B =11635.789238 C =11823.840400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C -0.139 4.139 4 C 0.119 3.881 5 H 0.074 0.926 6 O -0.575 6.575 7 C -0.159 4.159 8 C 0.498 3.502 9 O -0.562 6.562 10 N -0.653 5.653 11 C 0.063 3.937 12 C -0.080 4.080 13 C -0.221 4.221 14 C 0.106 3.894 15 O -0.233 6.233 16 C -0.412 4.412 17 H 0.107 0.893 18 C -0.027 4.027 19 N -0.923 5.923 20 Si 1.022 2.978 21 H -0.247 1.247 22 H -0.271 1.271 23 H -0.269 1.269 24 C -0.193 4.193 25 C -0.076 4.076 26 H 0.060 0.940 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.381 0.619 34 H 0.131 0.869 35 H 0.136 0.864 36 H 0.426 0.574 37 H 0.161 0.839 38 H 0.132 0.868 39 H 0.272 0.728 40 H 0.109 0.891 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.126 3.097 2.026 29.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C -0.177 4.177 4 C 0.059 3.941 5 H 0.092 0.908 6 O -0.382 6.382 7 C -0.198 4.198 8 C 0.288 3.712 9 O -0.440 6.440 10 N -0.301 5.301 11 C -0.030 4.030 12 C -0.100 4.100 13 C -0.241 4.241 14 C 0.055 3.945 15 O -0.140 6.140 16 C -0.488 4.488 17 H 0.125 0.875 18 C -0.224 4.224 19 N -0.562 5.562 20 Si 0.841 3.159 21 H -0.170 1.170 22 H -0.197 1.197 23 H -0.194 1.194 24 C -0.213 4.213 25 C -0.096 4.096 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.230 0.770 34 H 0.149 0.851 35 H 0.154 0.846 36 H 0.265 0.735 37 H 0.178 0.822 38 H 0.150 0.850 39 H 0.081 0.919 40 H 0.127 0.873 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -28.139 1.706 1.503 28.230 hybrid contribution 0.706 0.752 0.408 1.109 sum -27.432 2.459 1.911 27.609 Atomic orbital electron populations 1.21759 0.94845 1.01769 1.02305 1.21466 0.96367 0.96965 1.01575 1.22260 0.93378 0.97547 1.04501 1.21717 0.93292 0.91614 0.87450 0.90752 1.86720 1.77622 1.57558 1.16262 1.22511 0.88488 1.00720 1.08123 1.21622 0.91898 0.82772 0.74932 1.90755 1.71062 1.32627 1.49532 1.43266 1.03229 1.10985 1.72619 1.17423 0.83856 0.97865 1.03895 1.20871 0.92375 0.98901 0.97872 1.21146 0.95128 1.00407 1.07379 1.19865 0.84302 0.94854 0.95441 1.83961 1.14697 1.49722 1.65580 1.21925 0.90753 1.03538 1.32598 0.87549 1.26671 0.96016 1.01310 0.98442 1.70218 1.07314 1.34351 1.44287 0.84478 0.78144 0.76035 0.77201 1.16961 1.19658 1.19396 1.20275 0.94141 0.99111 1.07790 1.20846 0.91961 0.98748 0.98009 0.92098 0.93056 0.92113 0.93172 0.92770 0.89613 0.89201 0.77015 0.85091 0.84572 0.73541 0.82197 0.84992 0.91910 0.87326 0.85207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.91 71.98 0.71 -0.70 16 2 C -0.13 -1.59 5.83 30.59 0.18 -1.41 16 3 C -0.14 -1.26 4.89 30.60 0.15 -1.11 16 4 C 0.12 1.86 2.51 30.60 0.08 1.94 16 5 H 0.07 1.60 7.95 -2.39 -0.02 1.59 16 6 O -0.57 -12.16 12.11 -135.19 -1.64 -13.80 16 7 C -0.16 -1.81 5.38 29.85 0.16 -1.65 16 8 C 0.50 11.93 7.55 87.66 0.66 12.59 16 9 O -0.56 -20.11 12.86 10.73 0.14 -19.97 16 10 N -0.65 -14.66 5.34 -303.38 -1.62 -16.28 16 11 C 0.06 2.12 6.30 38.17 0.24 2.36 16 12 C -0.08 -2.65 9.96 22.38 0.22 -2.43 16 13 C -0.22 -9.49 9.16 22.38 0.20 -9.29 16 14 C 0.11 5.48 6.65 22.59 0.15 5.63 16 15 O -0.23 -14.38 9.76 -22.90 -0.22 -14.61 16 16 C -0.41 -24.14 9.48 67.91 0.64 -23.50 16 17 H 0.11 5.60 5.20 -2.91 -0.02 5.58 16 18 C -0.03 -1.57 5.49 84.83 0.47 -1.11 16 19 N -0.92 -57.75 13.67 21.61 0.30 -57.45 16 20 Si 1.02 42.95 29.55 68.60 2.03 44.97 16 21 H -0.25 -9.36 7.11 99.48 0.71 -8.65 16 22 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 23 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 24 C -0.19 -9.18 9.98 22.37 0.22 -8.95 16 25 C -0.08 -3.06 8.69 22.38 0.19 -2.87 16 26 H 0.06 0.48 8.14 -2.39 -0.02 0.47 16 27 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.05 0.84 7.82 -2.39 -0.02 0.82 16 31 H 0.09 0.48 8.14 -2.39 -0.02 0.47 16 32 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.38 4.76 9.05 -74.05 -0.67 4.09 16 34 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.14 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.43 5.44 8.82 -92.71 -0.82 4.62 16 37 H 0.16 3.72 8.06 -2.91 -0.02 3.69 16 38 H 0.13 5.57 5.63 -2.91 -0.02 5.55 16 39 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 40 H 0.11 5.22 8.06 -2.91 -0.02 5.20 16 41 H 0.13 5.23 6.23 -2.91 -0.02 5.22 16 Total: -1.00 -84.05 346.66 2.84 -81.21 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: -0.43 Total: 26.43 kcal Atomic # 6 Polarization: -34.79 SS G_CDS: 4.29 Total: -30.50 kcal Atomic # 7 Polarization: -72.41 SS G_CDS: -1.32 Total: -73.74 kcal Atomic # 8 Polarization: -46.65 SS G_CDS: -1.72 Total: -48.38 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.97 kcal Total: -84.05 2.84 -81.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319620887.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.413 kcal (2) G-P(sol) polarization free energy of solvation -84.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds