Wall clock time and date at job start Tue Mar 31 2020 07:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 114.00203 * 2 1 4 4 H 1.09009 * 109.46583 * 17.25442 * 3 2 1 5 5 C 1.50692 * 109.47202 * 137.25198 * 3 2 1 6 6 O 1.21288 * 120.00419 * 5.00349 * 5 3 2 7 7 N 1.34777 * 119.99925 * 185.00602 * 5 3 2 8 8 C 1.39997 * 120.00377 * 174.29112 * 7 5 3 9 9 C 1.38922 * 120.00589 * 151.96843 * 8 7 5 10 10 C 1.38003 * 119.99671 * 180.02562 * 9 8 7 11 11 C 1.38914 * 120.00335 * 0.02634 * 10 9 8 12 12 O 1.35766 * 119.99572 * 179.97438 * 11 10 9 13 13 C 1.34815 * 117.00368 * 5.55696 * 12 11 10 14 14 H 1.07998 * 119.99993 * 354.93837 * 13 12 11 15 15 C 1.38637 * 119.99819 * 174.93922 * 13 12 11 16 16 N 1.31580 * 119.99359 * 180.02562 * 15 13 12 17 17 Si 1.86795 * 120.00387 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.47155 * 90.00120 * 17 15 13 19 19 H 1.48499 * 109.47158 * 209.99962 * 17 15 13 20 20 H 1.48502 * 109.47114 * 330.00256 * 17 15 13 21 21 C 1.38907 * 119.99822 * 0.24838 * 11 10 9 22 22 C 1.38001 * 120.00360 * 359.45292 * 21 11 10 23 23 C 1.52993 * 109.47346 * 257.25626 * 3 2 1 24 24 C 1.52996 * 109.47269 * 303.44689 * 23 3 2 25 25 C 1.53003 * 109.47243 * 63.44724 * 23 3 2 26 26 H 1.08994 * 109.47025 * 187.49336 * 1 2 3 27 27 H 1.09000 * 109.47260 * 307.49160 * 1 2 3 28 28 H 1.09003 * 109.46823 * 67.49454 * 1 2 3 29 29 H 0.97003 * 119.99983 * 354.28076 * 7 5 3 30 30 H 1.07993 * 119.99962 * 0.02562 * 9 8 7 31 31 H 1.08002 * 119.99455 * 180.02562 * 10 9 8 32 32 H 0.96999 * 119.99343 * 180.02562 * 16 15 13 33 33 H 1.08006 * 119.99559 * 179.70297 * 21 11 10 34 34 H 1.08009 * 119.99494 * 180.27198 * 22 21 11 35 35 H 1.08998 * 109.47417 * 183.44574 * 23 3 2 36 36 H 1.09001 * 109.46916 * 300.00047 * 24 23 3 37 37 H 1.09006 * 109.46926 * 59.99951 * 24 23 3 38 38 H 1.08997 * 109.47607 * 180.02562 * 24 23 3 39 39 H 1.08996 * 109.47661 * 57.49271 * 25 23 3 40 40 H 1.09004 * 109.47157 * 177.49748 * 25 23 3 41 41 H 1.09008 * 109.47101 * 297.49101 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.2614 2.0366 0.3049 5 6 3.1677 1.3400 0.9644 6 8 3.5231 0.3232 1.5220 7 7 3.8081 2.5008 1.2073 8 6 4.8035 2.5588 2.1900 9 6 5.8339 3.4843 2.0813 10 6 6.8153 3.5410 3.0498 11 6 6.7732 2.6724 4.1331 12 8 7.7391 2.7279 5.0856 13 6 8.6442 3.7218 4.9823 14 1 8.6297 4.3784 4.1249 15 6 9.5935 3.9009 5.9766 16 7 10.4765 4.8712 5.8760 17 14 9.6182 2.7657 7.4599 18 1 10.4953 1.6011 7.1774 19 1 10.1389 3.5031 8.6390 20 1 8.2400 2.2903 7.7424 21 6 5.7461 1.7432 4.2388 22 6 4.7612 1.6905 3.2735 23 6 2.5084 1.6420 -1.4069 24 6 3.4954 0.5681 -1.8689 25 6 1.3208 1.6914 -2.3702 26 1 -0.3633 -1.0188 0.1340 27 1 -0.3634 0.6255 0.8154 28 1 -0.3633 0.3934 -0.9494 29 1 3.5793 3.2960 0.7011 30 1 5.8668 4.1593 1.2390 31 1 7.6161 4.2608 2.9655 32 1 11.1409 4.9963 6.5715 33 1 5.7161 1.0647 5.0785 34 1 3.9602 0.9709 3.3581 35 1 3.0063 2.6116 -1.3939 36 1 4.3415 0.5329 -1.1826 37 1 2.9975 -0.4015 -1.8820 38 1 3.8507 0.8081 -2.8710 39 1 0.5964 2.4252 -2.0167 40 1 1.6699 1.9747 -3.3632 41 1 0.8499 0.7095 -2.4172 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320618140.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:04 Heat of formation + Delta-G solvation = -80.068341 kcal Electronic energy + Delta-G solvation = -23243.727723 eV Core-core repulsion = 19703.955165 eV Total energy + Delta-G solvation = -3539.772557 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.60536 -39.13722 -38.10108 -36.45994 -35.01787 -33.89580 -32.31738 -30.30718 -29.30228 -27.84842 -27.28269 -26.00551 -25.05040 -22.45259 -21.86937 -20.95385 -19.93045 -18.08573 -17.75058 -17.29825 -16.96785 -16.52716 -15.76339 -15.04948 -14.90948 -14.69176 -14.24285 -13.98259 -13.86255 -13.70209 -13.66342 -13.23359 -12.82503 -12.64812 -12.43383 -12.29589 -12.23931 -11.96054 -11.80390 -11.73536 -11.53910 -11.32720 -11.03118 -10.92306 -10.81028 -10.19782 -10.12934 -9.70846 -9.46185 -9.23554 -8.76683 -8.29464 -7.02372 -6.41201 -4.06901 1.96139 2.10768 2.72877 2.89757 3.24535 3.27509 3.42442 3.74853 4.25143 4.35198 4.38710 4.53264 4.59502 4.77778 4.89356 4.92283 5.02824 5.09352 5.11856 5.25203 5.37446 5.39690 5.47944 5.51741 5.65222 5.70813 5.76220 5.93526 6.04073 6.10172 6.15809 6.17565 6.67490 6.71467 6.74855 6.93348 7.07692 7.22859 7.58589 7.63185 7.78685 8.02903 8.28784 8.94278 9.57124 10.66411 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.037211 B = 0.003000 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.281739 B = 9331.842784 C = 9782.793665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.351 6.351 3 C 0.078 3.922 4 H 0.088 0.912 5 C 0.503 3.497 6 O -0.503 6.503 7 N -0.659 5.659 8 C 0.049 3.951 9 C -0.095 4.095 10 C -0.204 4.204 11 C 0.150 3.850 12 O -0.217 6.217 13 C -0.389 4.389 14 H 0.106 0.894 15 C 0.063 3.937 16 N -0.881 5.881 17 Si 0.905 3.095 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.259 1.259 21 C -0.175 4.175 22 C -0.077 4.077 23 C -0.108 4.108 24 C -0.145 4.145 25 C -0.149 4.149 26 H 0.088 0.912 27 H 0.043 0.957 28 H 0.046 0.954 29 H 0.402 0.598 30 H 0.113 0.887 31 H 0.138 0.862 32 H 0.279 0.721 33 H 0.121 0.879 34 H 0.132 0.868 35 H 0.082 0.918 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.061 0.939 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.526 -3.687 -14.700 24.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.268 6.268 3 C 0.016 3.984 4 H 0.105 0.895 5 C 0.288 3.712 6 O -0.377 6.377 7 N -0.306 5.306 8 C -0.043 4.043 9 C -0.115 4.115 10 C -0.224 4.224 11 C 0.098 3.902 12 O -0.122 6.122 13 C -0.464 4.464 14 H 0.124 0.876 15 C -0.140 4.140 16 N -0.519 5.519 17 Si 0.731 3.269 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.183 1.183 21 C -0.195 4.195 22 C -0.097 4.097 23 C -0.127 4.127 24 C -0.202 4.202 25 C -0.206 4.206 26 H 0.107 0.893 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.236 0.764 30 H 0.132 0.868 31 H 0.155 0.845 32 H 0.089 0.911 33 H 0.139 0.861 34 H 0.150 0.850 35 H 0.100 0.900 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -18.967 -4.656 -14.000 24.030 hybrid contribution -0.088 0.456 0.263 0.534 sum -19.056 -4.200 -13.737 23.863 Atomic orbital electron populations 1.23017 0.80889 1.03201 1.00151 1.88041 1.19384 1.24776 1.94614 1.22064 0.94573 0.87243 0.94519 0.89463 1.20551 0.84202 0.83466 0.82938 1.90715 1.64548 1.32889 1.49544 1.43226 1.37603 1.11751 1.37978 1.17326 0.92586 1.02969 0.91461 1.20480 0.93085 0.99011 0.98962 1.21088 1.01572 1.03813 0.95922 1.19148 0.88418 0.93700 0.88917 1.83580 1.35162 1.48662 1.44780 1.20759 1.08013 1.08309 1.09347 0.87639 1.24464 0.94648 0.96571 0.98329 1.69657 1.17106 1.29875 1.35224 0.86177 0.79677 0.80238 0.80821 1.19863 1.20849 1.18289 1.20146 0.95424 1.02238 1.01659 1.20751 0.98839 0.98499 0.91605 1.21548 0.97635 1.00255 0.93244 1.21746 0.98655 0.98963 1.00844 1.21908 0.97347 1.02187 0.99157 0.89309 0.93830 0.93557 0.76362 0.86850 0.84467 0.91070 0.86109 0.85029 0.89967 0.92407 0.91480 0.92562 0.92686 0.91977 0.91839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 10.47 101.05 1.06 1.24 16 2 O -0.35 -4.01 8.76 -55.09 -0.48 -4.49 16 3 C 0.08 0.78 2.38 -27.89 -0.07 0.71 16 4 H 0.09 0.65 7.56 -51.92 -0.39 0.26 16 5 C 0.50 7.04 5.86 -10.99 -0.06 6.98 16 6 O -0.50 -9.33 13.86 -14.31 -0.20 -9.53 16 7 N -0.66 -8.64 5.30 -9.82 -0.05 -8.69 16 8 C 0.05 0.84 6.38 -83.62 -0.53 0.31 16 9 C -0.10 -1.66 9.94 -39.41 -0.39 -2.06 16 10 C -0.20 -4.33 9.16 -39.42 -0.36 -4.69 16 11 C 0.15 3.51 6.65 -39.08 -0.26 3.25 16 12 O -0.22 -5.76 8.58 0.04 0.00 -5.76 16 13 C -0.39 -10.93 9.94 30.88 0.31 -10.62 16 14 H 0.11 3.00 5.43 -52.49 -0.28 2.71 16 15 C 0.06 1.77 5.49 -17.51 -0.10 1.67 16 16 N -0.88 -25.41 13.96 55.48 0.77 -24.64 16 17 Si 0.91 21.83 28.62 -169.99 -4.86 16.97 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 20 H -0.26 -6.27 7.11 56.52 0.40 -5.87 16 21 C -0.17 -3.66 9.98 -39.42 -0.39 -4.06 16 22 C -0.08 -1.47 8.68 -39.42 -0.34 -1.82 16 23 C -0.11 -0.88 2.73 -90.62 -0.25 -1.13 16 24 C -0.14 -1.45 8.81 37.16 0.33 -1.13 16 25 C -0.15 -0.91 8.28 37.16 0.31 -0.60 16 26 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.04 0.29 7.95 -51.93 -0.41 -0.12 16 28 H 0.05 0.26 6.16 -51.93 -0.32 -0.06 16 29 H 0.40 3.71 8.34 -40.82 -0.34 3.37 16 30 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 31 H 0.14 3.02 5.63 -52.49 -0.30 2.72 16 32 H 0.28 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.12 2.39 8.06 -52.48 -0.42 1.96 16 34 H 0.13 2.50 6.03 -52.48 -0.32 2.18 16 35 H 0.08 0.56 7.66 -51.93 -0.40 0.16 16 36 H 0.06 0.72 7.33 -51.93 -0.38 0.34 16 37 H 0.07 0.73 7.60 -51.93 -0.39 0.33 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.06 0.41 6.45 -51.92 -0.33 0.08 16 LS Contribution 338.29 15.07 5.10 5.10 Total: -1.00 -32.89 338.29 -6.02 -38.91 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -5.54 Total: 4.07 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -0.76 Total: -11.94 kcal Atomic # 7 Polarization: -34.05 SS G_CDS: 0.72 Total: -33.33 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.68 Total: -19.78 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.86 Total: 16.97 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.89 -6.02 -38.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320618140.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.155 kcal (2) G-P(sol) polarization free energy of solvation -32.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds