Wall clock time and date at job start Tue Mar 31 2020 07:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 114.00203 * 2 1 4 4 H 1.09009 * 109.46583 * 17.25442 * 3 2 1 5 5 C 1.50692 * 109.47202 * 137.25198 * 3 2 1 6 6 O 1.21288 * 120.00419 * 5.00349 * 5 3 2 7 7 N 1.34777 * 119.99925 * 185.00602 * 5 3 2 8 8 C 1.39997 * 120.00377 * 174.29112 * 7 5 3 9 9 C 1.38922 * 120.00589 * 151.96843 * 8 7 5 10 10 C 1.38003 * 119.99671 * 180.02562 * 9 8 7 11 11 C 1.38914 * 120.00335 * 0.02634 * 10 9 8 12 12 O 1.35766 * 119.99572 * 179.97438 * 11 10 9 13 13 C 1.34815 * 117.00368 * 5.55696 * 12 11 10 14 14 H 1.07998 * 119.99993 * 354.93837 * 13 12 11 15 15 C 1.38637 * 119.99819 * 174.93922 * 13 12 11 16 16 N 1.31580 * 119.99359 * 180.02562 * 15 13 12 17 17 Si 1.86795 * 120.00387 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.47155 * 90.00120 * 17 15 13 19 19 H 1.48499 * 109.47158 * 209.99962 * 17 15 13 20 20 H 1.48502 * 109.47114 * 330.00256 * 17 15 13 21 21 C 1.38907 * 119.99822 * 0.24838 * 11 10 9 22 22 C 1.38001 * 120.00360 * 359.45292 * 21 11 10 23 23 C 1.52993 * 109.47346 * 257.25626 * 3 2 1 24 24 C 1.52996 * 109.47269 * 303.44689 * 23 3 2 25 25 C 1.53003 * 109.47243 * 63.44724 * 23 3 2 26 26 H 1.08994 * 109.47025 * 187.49336 * 1 2 3 27 27 H 1.09000 * 109.47260 * 307.49160 * 1 2 3 28 28 H 1.09003 * 109.46823 * 67.49454 * 1 2 3 29 29 H 0.97003 * 119.99983 * 354.28076 * 7 5 3 30 30 H 1.07993 * 119.99962 * 0.02562 * 9 8 7 31 31 H 1.08002 * 119.99455 * 180.02562 * 10 9 8 32 32 H 0.96999 * 119.99343 * 180.02562 * 16 15 13 33 33 H 1.08006 * 119.99559 * 179.70297 * 21 11 10 34 34 H 1.08009 * 119.99494 * 180.27198 * 22 21 11 35 35 H 1.08998 * 109.47417 * 183.44574 * 23 3 2 36 36 H 1.09001 * 109.46916 * 300.00047 * 24 23 3 37 37 H 1.09006 * 109.46926 * 59.99951 * 24 23 3 38 38 H 1.08997 * 109.47607 * 180.02562 * 24 23 3 39 39 H 1.08996 * 109.47661 * 57.49271 * 25 23 3 40 40 H 1.09004 * 109.47157 * 177.49748 * 25 23 3 41 41 H 1.09008 * 109.47101 * 297.49101 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.2614 2.0366 0.3049 5 6 3.1677 1.3400 0.9644 6 8 3.5231 0.3232 1.5220 7 7 3.8081 2.5008 1.2073 8 6 4.8035 2.5588 2.1900 9 6 5.8339 3.4843 2.0813 10 6 6.8153 3.5410 3.0498 11 6 6.7732 2.6724 4.1331 12 8 7.7391 2.7279 5.0856 13 6 8.6442 3.7218 4.9823 14 1 8.6297 4.3784 4.1249 15 6 9.5935 3.9009 5.9766 16 7 10.4765 4.8712 5.8760 17 14 9.6182 2.7657 7.4599 18 1 10.4953 1.6011 7.1774 19 1 10.1389 3.5031 8.6390 20 1 8.2400 2.2903 7.7424 21 6 5.7461 1.7432 4.2388 22 6 4.7612 1.6905 3.2735 23 6 2.5084 1.6420 -1.4069 24 6 3.4954 0.5681 -1.8689 25 6 1.3208 1.6914 -2.3702 26 1 -0.3633 -1.0188 0.1340 27 1 -0.3634 0.6255 0.8154 28 1 -0.3633 0.3934 -0.9494 29 1 3.5793 3.2960 0.7011 30 1 5.8668 4.1593 1.2390 31 1 7.6161 4.2608 2.9655 32 1 11.1409 4.9963 6.5715 33 1 5.7161 1.0647 5.0785 34 1 3.9602 0.9709 3.3581 35 1 3.0063 2.6116 -1.3939 36 1 4.3415 0.5329 -1.1826 37 1 2.9975 -0.4015 -1.8820 38 1 3.8507 0.8081 -2.8710 39 1 0.5964 2.4252 -2.0167 40 1 1.6699 1.9747 -3.3632 41 1 0.8499 0.7095 -2.4172 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320618140.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:04 Heat of formation + Delta-G solvation = -101.714195 kcal Electronic energy + Delta-G solvation = -23244.666358 eV Core-core repulsion = 19703.955165 eV Total energy + Delta-G solvation = -3540.711192 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.78763 -40.68078 -39.23364 -37.97570 -35.87151 -35.14308 -34.33995 -31.92172 -30.47084 -28.87611 -28.05642 -27.26254 -26.44083 -24.04578 -23.20068 -22.07175 -20.99898 -19.82307 -19.20847 -18.85632 -17.99374 -17.55590 -16.70631 -16.52822 -16.11619 -16.00985 -15.64076 -15.58279 -15.29685 -14.82482 -14.55538 -14.47788 -14.16812 -14.16328 -13.88896 -13.49489 -13.34684 -13.32188 -12.97154 -12.76110 -12.59779 -12.48299 -12.25587 -12.01607 -11.98335 -11.65742 -11.39747 -11.25404 -10.97067 -10.69949 -10.32365 -9.88480 -8.65297 -8.49113 -6.19985 0.44136 0.48352 1.32182 1.35033 1.52039 1.57397 1.84161 2.28833 2.76422 2.96981 3.03955 3.16345 3.55677 3.68729 3.87637 4.02196 4.08861 4.16692 4.32214 4.45037 4.49421 4.55483 4.58121 4.67166 4.70698 4.83091 4.87426 4.94011 5.03136 5.05709 5.13956 5.15804 5.34374 5.37648 5.44553 5.48177 5.52212 5.75785 5.88807 6.07662 6.19546 6.52486 6.85588 7.17205 7.60124 8.62105 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.037211 B = 0.003000 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.281739 B = 9331.842784 C = 9782.793665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.383 6.383 3 C 0.083 3.917 4 H 0.123 0.877 5 C 0.501 3.499 6 O -0.552 6.552 7 N -0.646 5.646 8 C 0.076 3.924 9 C -0.086 4.086 10 C -0.211 4.211 11 C 0.112 3.888 12 O -0.245 6.245 13 C -0.397 4.397 14 H 0.088 0.912 15 C 0.012 3.988 16 N -0.922 5.922 17 Si 0.966 3.034 18 H -0.268 1.268 19 H -0.267 1.267 20 H -0.265 1.265 21 C -0.175 4.175 22 C -0.085 4.085 23 C -0.104 4.104 24 C -0.144 4.144 25 C -0.145 4.145 26 H 0.091 0.909 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.426 0.574 30 H 0.158 0.842 31 H 0.123 0.877 32 H 0.284 0.716 33 H 0.125 0.875 34 H 0.136 0.864 35 H 0.103 0.897 36 H 0.026 0.974 37 H 0.052 0.948 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.416 -3.392 -16.670 28.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.301 6.301 3 C 0.022 3.978 4 H 0.140 0.860 5 C 0.289 3.711 6 O -0.429 6.429 7 N -0.294 5.294 8 C -0.018 4.018 9 C -0.106 4.106 10 C -0.231 4.231 11 C 0.062 3.938 12 O -0.153 6.153 13 C -0.474 4.474 14 H 0.105 0.895 15 C -0.187 4.187 16 N -0.563 5.563 17 Si 0.789 3.211 18 H -0.193 1.193 19 H -0.191 1.191 20 H -0.189 1.189 21 C -0.195 4.195 22 C -0.105 4.105 23 C -0.123 4.123 24 C -0.201 4.201 25 C -0.202 4.202 26 H 0.109 0.891 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.265 0.735 30 H 0.175 0.825 31 H 0.141 0.859 32 H 0.094 0.906 33 H 0.143 0.857 34 H 0.154 0.846 35 H 0.121 0.879 36 H 0.045 0.955 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -21.919 -4.340 -16.030 27.500 hybrid contribution 0.517 0.277 0.599 0.838 sum -21.402 -4.064 -15.431 26.696 Atomic orbital electron populations 1.23222 0.78937 1.03927 1.01739 1.88012 1.21604 1.25747 1.94730 1.22172 0.93512 0.87854 0.94260 0.85959 1.21487 0.84511 0.82526 0.82560 1.90701 1.65970 1.34699 1.51525 1.43171 1.36256 1.12996 1.37001 1.17447 0.92571 1.00715 0.91043 1.20781 0.91487 0.99340 0.98981 1.21160 1.02322 1.03195 0.96406 1.19577 0.89055 0.95570 0.89554 1.83526 1.36327 1.48907 1.46542 1.20748 1.08831 1.08698 1.09082 0.89497 1.25212 0.94409 0.98079 1.00951 1.69728 1.18274 1.31655 1.36593 0.85281 0.79244 0.78566 0.78050 1.19318 1.19136 1.18908 1.20306 0.95165 1.01675 1.02371 1.20896 0.98500 0.99162 0.91960 1.21608 0.98144 1.00215 0.92362 1.21732 0.98028 0.99342 1.01044 1.21882 0.96698 1.02584 0.99008 0.89088 0.92906 0.91328 0.73496 0.82492 0.85898 0.90596 0.85667 0.84627 0.87918 0.95484 0.92865 0.90982 0.90647 0.91075 0.92407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 10.47 113.37 1.19 1.39 16 2 O -0.38 -7.86 8.76 -129.99 -1.14 -9.00 16 3 C 0.08 1.38 2.38 29.84 0.07 1.45 16 4 H 0.12 1.19 7.56 -2.38 -0.02 1.17 16 5 C 0.50 12.78 5.86 87.65 0.51 13.29 16 6 O -0.55 -19.94 13.86 15.93 0.22 -19.72 16 7 N -0.65 -14.67 5.30 -303.38 -1.61 -16.28 16 8 C 0.08 2.44 6.38 38.16 0.24 2.68 16 9 C -0.09 -2.81 9.94 22.38 0.22 -2.59 16 10 C -0.21 -9.03 9.16 22.38 0.20 -8.82 16 11 C 0.11 5.35 6.65 22.59 0.15 5.50 16 12 O -0.25 -13.54 8.58 -22.76 -0.20 -13.74 16 13 C -0.40 -23.34 9.94 67.92 0.68 -22.66 16 14 H 0.09 5.24 5.43 -2.91 -0.02 5.22 16 15 C 0.01 0.70 5.49 84.83 0.47 1.16 16 16 N -0.92 -54.88 13.96 21.61 0.30 -54.58 16 17 Si 0.97 46.06 28.62 68.60 1.96 48.02 16 18 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 20 H -0.26 -12.70 7.11 99.48 0.71 -12.00 16 21 C -0.18 -7.43 9.98 22.37 0.22 -7.20 16 22 C -0.09 -3.18 8.68 22.38 0.19 -2.99 16 23 C -0.10 -1.30 2.73 -10.80 -0.03 -1.33 16 24 C -0.14 -2.62 8.81 71.98 0.63 -1.98 16 25 C -0.14 -1.13 8.28 71.98 0.60 -0.53 16 26 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.05 0.52 7.95 -2.39 -0.02 0.50 16 28 H 0.07 0.50 6.16 -2.39 -0.01 0.49 16 29 H 0.43 5.75 8.34 -92.71 -0.77 4.98 16 30 H 0.16 3.77 8.06 -2.91 -0.02 3.74 16 31 H 0.12 5.61 5.63 -2.91 -0.02 5.59 16 32 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 33 H 0.13 5.05 8.06 -2.91 -0.02 5.03 16 34 H 0.14 5.04 6.03 -2.91 -0.02 5.02 16 35 H 0.10 0.88 7.66 -2.39 -0.02 0.86 16 36 H 0.03 0.64 7.33 -2.39 -0.02 0.62 16 37 H 0.05 1.10 7.60 -2.38 -0.02 1.08 16 38 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 40 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 41 H 0.06 0.54 6.45 -2.38 -0.02 0.52 16 Total: -1.00 -75.55 338.29 5.18 -70.38 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: 0.28 Total: 17.54 kcal Atomic # 6 Polarization: -27.98 SS G_CDS: 5.35 Total: -22.63 kcal Atomic # 7 Polarization: -69.55 SS G_CDS: -1.31 Total: -70.86 kcal Atomic # 8 Polarization: -41.35 SS G_CDS: -1.11 Total: -42.46 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 1.96 Total: 48.02 kcal Total: -75.55 5.18 -70.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320618140.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.337 kcal (2) G-P(sol) polarization free energy of solvation -75.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds