Wall clock time and date at job start Tue Mar 31 2020 07:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46848 * 2 1 4 4 C 1.52995 * 109.47121 * 119.99731 * 2 1 3 5 5 H 1.08997 * 109.47127 * 185.00528 * 4 2 1 6 6 O 1.42901 * 109.47427 * 305.00280 * 4 2 1 7 7 C 1.50701 * 109.47252 * 65.00097 * 4 2 1 8 8 O 1.21282 * 120.00319 * 244.99934 * 7 4 2 9 9 N 1.34778 * 119.99796 * 64.99745 * 7 4 2 10 10 C 1.46502 * 120.00014 * 179.97438 * 9 7 4 11 11 C 1.50698 * 109.46978 * 179.97438 * 10 9 7 12 12 C 1.38318 * 119.96867 * 269.72591 * 11 10 9 13 13 C 1.38289 * 120.13656 * 179.76822 * 12 11 10 14 14 C 1.38121 * 120.06635 * 0.51200 * 13 12 11 15 15 C 1.38848 * 119.93356 * 359.74488 * 14 13 12 16 16 O 1.35757 * 120.07062 * 179.97438 * 15 14 13 17 17 C 1.34826 * 116.99900 * 354.48945 * 16 15 14 18 18 H 1.08007 * 119.99883 * 5.05637 * 17 16 15 19 19 C 1.38655 * 119.99933 * 185.05845 * 17 16 15 20 20 N 1.31564 * 119.99636 * 180.02562 * 19 17 16 21 21 Si 1.86794 * 119.99919 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.46975 * 90.00378 * 21 19 17 23 23 H 1.48505 * 109.47103 * 210.00067 * 21 19 17 24 24 H 1.48495 * 109.47572 * 330.00111 * 21 19 17 25 25 C 1.38080 * 119.96149 * 90.00546 * 11 10 9 26 26 H 1.08999 * 109.47256 * 60.00537 * 1 2 3 27 27 H 1.09000 * 109.46919 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47195 * 300.00090 * 1 2 3 29 29 H 1.09002 * 109.47267 * 239.99899 * 2 1 3 30 30 H 1.09002 * 109.47286 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47205 * 299.99632 * 3 2 1 32 32 H 1.08992 * 109.47297 * 59.99972 * 3 2 1 33 33 H 0.96704 * 113.99688 * 59.99437 * 6 4 2 34 34 H 0.96998 * 120.00309 * 0.02562 * 9 7 4 35 35 H 1.09004 * 109.46647 * 60.00669 * 10 9 7 36 36 H 1.08994 * 109.47316 * 300.00691 * 10 9 7 37 37 H 1.07999 * 119.93168 * 0.02562 * 12 11 10 38 38 H 1.08004 * 119.96307 * 180.25437 * 13 12 11 39 39 H 1.07998 * 120.03181 * 179.71958 * 14 13 12 40 40 H 0.97002 * 119.99366 * 180.02562 * 20 19 17 41 41 H 1.08006 * 120.03787 * 359.95607 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 3.1263 -0.6442 1.2952 6 8 1.4702 -0.1188 2.4131 7 6 1.6414 -2.1732 1.1890 8 8 0.8660 -2.6237 2.0056 9 7 2.1465 -2.9713 0.2275 10 6 1.7594 -4.3831 0.1692 11 6 2.4578 -5.0480 -0.9889 12 6 1.8566 -5.0763 -2.2343 13 6 2.4964 -5.6813 -3.3005 14 6 3.7338 -6.2686 -3.1222 15 6 4.3375 -6.2465 -1.8721 16 8 5.5534 -6.8234 -1.6936 17 6 6.0696 -7.4995 -2.7396 18 1 5.5581 -7.4951 -3.6909 19 6 7.2570 -8.2005 -2.5941 20 7 7.7609 -8.8599 -3.6150 21 14 8.1419 -8.2075 -0.9490 22 1 7.6572 -9.3483 -0.1312 23 1 9.6034 -8.3451 -1.1736 24 1 7.8686 -6.9348 -0.2344 25 6 3.6946 -5.6334 -0.8043 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 0.5040 -0.1507 2.4395 34 1 2.7668 -2.6112 -0.4254 35 1 0.6804 -4.4587 0.0342 36 1 2.0448 -4.8768 1.0981 37 1 0.8873 -4.6214 -2.3752 38 1 2.0263 -5.6982 -4.2727 39 1 4.2310 -6.7449 -3.9543 40 1 8.5914 -9.3506 -3.5130 41 1 4.1619 -5.6143 0.1693 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323560309.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:13 Heat of formation + Delta-G solvation = -103.979224 kcal Electronic energy + Delta-G solvation = -22964.376450 eV Core-core repulsion = 19423.567039 eV Total energy + Delta-G solvation = -3540.809411 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.43221 -39.33539 -37.61453 -36.87305 -34.86305 -33.96924 -32.48137 -31.06622 -29.52317 -27.93186 -27.58833 -25.64524 -24.94060 -21.91671 -21.46813 -20.79556 -20.26324 -18.35826 -17.76148 -17.14768 -16.66152 -16.51384 -15.56420 -15.26135 -15.16716 -14.80895 -14.41837 -14.13433 -13.92547 -13.67141 -13.45695 -13.28102 -12.74705 -12.65770 -12.61651 -12.44623 -12.24803 -12.10136 -11.90174 -11.55360 -11.48509 -11.30918 -11.00637 -10.92678 -10.81224 -10.77644 -10.24575 -9.67728 -9.50638 -9.15054 -8.96602 -8.38560 -7.53543 -6.50160 -4.17746 1.74534 2.09372 2.44033 3.13913 3.18890 3.21298 3.34454 4.00028 4.16472 4.31142 4.34493 4.44905 4.56914 4.60716 4.78778 4.99125 5.05563 5.16175 5.18461 5.30701 5.35963 5.47683 5.51873 5.57034 5.67727 5.68826 5.76427 5.86797 5.93492 5.95777 6.09373 6.30947 6.36348 6.61810 6.93840 7.05089 7.15016 7.17599 7.40597 7.47008 7.68541 7.93309 8.05797 8.84624 9.45096 10.57199 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.021348 B = 0.003175 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.284664 B = 8817.597836 C = 9230.440146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.124 4.124 3 C -0.143 4.143 4 C 0.095 3.905 5 H 0.124 0.876 6 O -0.536 6.536 7 C 0.484 3.516 8 O -0.539 6.539 9 N -0.717 5.717 10 C 0.166 3.834 11 C -0.076 4.076 12 C -0.187 4.187 13 C -0.077 4.077 14 C -0.212 4.212 15 C 0.157 3.843 16 O -0.215 6.215 17 C -0.392 4.392 18 H 0.107 0.893 19 C 0.065 3.935 20 N -0.877 5.877 21 Si 0.905 3.095 22 H -0.273 1.273 23 H -0.281 1.281 24 H -0.260 1.260 25 C -0.172 4.172 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.085 0.915 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.380 0.620 34 H 0.404 0.596 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.109 0.891 38 H 0.112 0.888 39 H 0.134 0.866 40 H 0.281 0.719 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.908 16.426 4.644 20.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.143 4.143 3 C -0.201 4.201 4 C 0.032 3.968 5 H 0.142 0.858 6 O -0.342 6.342 7 C 0.270 3.730 8 O -0.416 6.416 9 N -0.370 5.370 10 C 0.044 3.956 11 C -0.077 4.077 12 C -0.206 4.206 13 C -0.095 4.095 14 C -0.231 4.231 15 C 0.104 3.896 16 O -0.120 6.120 17 C -0.468 4.468 18 H 0.124 0.876 19 C -0.139 4.139 20 N -0.514 5.514 21 Si 0.731 3.269 22 H -0.198 1.198 23 H -0.207 1.207 24 H -0.184 1.184 25 C -0.191 4.191 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.104 0.896 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.230 0.770 34 H 0.238 0.762 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.152 0.848 40 H 0.091 0.909 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.507 16.053 5.507 20.505 hybrid contribution 0.262 -0.303 -0.179 0.439 sum -11.246 15.749 5.328 20.072 Atomic orbital electron populations 1.21883 0.94472 1.02435 1.02556 1.21775 0.97106 0.97917 0.97504 1.21773 1.01238 0.94703 1.02338 1.21951 1.00017 0.87921 0.86869 0.85803 1.86576 1.26445 1.79443 1.41706 1.21588 0.81171 0.89376 0.80903 1.90711 1.35219 1.76081 1.39623 1.46191 1.48201 1.10579 1.31985 1.20167 0.98711 0.79851 0.96881 1.19250 0.94532 0.99745 0.94130 1.20539 1.00723 1.06593 0.92754 1.20809 0.94418 0.96340 0.97955 1.21368 0.97408 1.06217 0.98140 1.19056 0.85285 0.92308 0.92923 1.83577 1.27367 1.60633 1.40404 1.20764 1.07533 1.28064 0.90389 0.87573 1.24473 0.95959 0.94597 0.98869 1.69646 1.20838 1.30470 1.30482 0.86181 0.78235 0.79858 0.82639 1.19798 1.20691 1.18360 1.20089 0.95771 1.05345 0.97940 0.91652 0.92285 0.92146 0.89621 0.92295 0.92303 0.91809 0.76992 0.76156 0.90845 0.90800 0.87325 0.86953 0.84806 0.90928 0.86381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 8.58 37.16 0.32 -0.80 16 2 C -0.12 -0.90 2.73 -90.62 -0.25 -1.15 16 3 C -0.14 -0.93 9.09 37.16 0.34 -0.59 16 4 C 0.10 0.89 3.13 -27.88 -0.09 0.80 16 5 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 6 O -0.54 -5.62 12.43 -55.09 -0.68 -6.31 16 7 C 0.48 5.85 6.15 -10.98 -0.07 5.79 16 8 O -0.54 -8.49 16.32 -14.30 -0.23 -8.73 16 9 N -0.72 -8.19 5.45 -61.47 -0.33 -8.52 16 10 C 0.17 2.20 5.80 -5.19 -0.03 2.17 16 11 C -0.08 -1.16 5.25 -104.65 -0.55 -1.71 16 12 C -0.19 -2.79 9.70 -39.53 -0.38 -3.17 16 13 C -0.08 -1.27 10.04 -39.61 -0.40 -1.66 16 14 C -0.21 -4.25 9.17 -39.40 -0.36 -4.61 16 15 C 0.16 3.39 6.65 -39.11 -0.26 3.13 16 16 O -0.21 -5.44 8.59 0.04 0.00 -5.44 16 17 C -0.39 -10.68 9.95 30.89 0.31 -10.37 16 18 H 0.11 2.94 5.44 -52.48 -0.29 2.65 16 19 C 0.06 1.77 5.49 -17.51 -0.10 1.67 16 20 N -0.88 -24.74 13.96 55.48 0.77 -23.96 16 21 Si 0.91 21.16 28.62 -169.99 -4.86 16.30 16 22 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.26 -6.07 7.11 56.52 0.40 -5.67 16 25 C -0.17 -3.14 9.65 -39.39 -0.38 -3.52 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.51 7.38 -51.93 -0.38 0.13 16 28 H 0.06 0.39 6.72 -51.93 -0.35 0.04 16 29 H 0.09 0.58 7.77 -51.93 -0.40 0.18 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.44 7.82 -51.93 -0.41 0.03 16 33 H 0.38 3.31 6.94 45.56 0.32 3.63 16 34 H 0.40 3.97 8.17 -40.82 -0.33 3.64 16 35 H 0.07 0.94 8.08 -51.93 -0.42 0.53 16 36 H 0.07 1.04 8.08 -51.93 -0.42 0.62 16 37 H 0.11 1.37 8.06 -52.49 -0.42 0.94 16 38 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 39 H 0.13 2.85 5.64 -52.49 -0.30 2.55 16 40 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.12 2.08 8.06 -52.48 -0.42 1.66 16 LS Contribution 345.14 15.07 5.20 5.20 Total: -1.00 -30.70 345.14 -7.11 -37.82 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -5.07 Total: 7.67 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: -1.90 Total: -14.02 kcal Atomic # 7 Polarization: -32.93 SS G_CDS: 0.44 Total: -32.49 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.92 Total: -20.47 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.86 Total: 16.30 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.70 -7.11 -37.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323560309.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.164 kcal (2) G-P(sol) polarization free energy of solvation -30.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds