Wall clock time and date at job start Tue Mar 31 2020 07:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46848 * 2 1 4 4 C 1.52995 * 109.47121 * 119.99731 * 2 1 3 5 5 H 1.08997 * 109.47127 * 185.00528 * 4 2 1 6 6 O 1.42901 * 109.47427 * 305.00280 * 4 2 1 7 7 C 1.50701 * 109.47252 * 65.00097 * 4 2 1 8 8 O 1.21282 * 120.00319 * 244.99934 * 7 4 2 9 9 N 1.34778 * 119.99796 * 64.99745 * 7 4 2 10 10 C 1.46502 * 120.00014 * 179.97438 * 9 7 4 11 11 C 1.50698 * 109.46978 * 179.97438 * 10 9 7 12 12 C 1.38318 * 119.96867 * 269.72591 * 11 10 9 13 13 C 1.38289 * 120.13656 * 179.76822 * 12 11 10 14 14 C 1.38121 * 120.06635 * 0.51200 * 13 12 11 15 15 C 1.38848 * 119.93356 * 359.74488 * 14 13 12 16 16 O 1.35757 * 120.07062 * 179.97438 * 15 14 13 17 17 C 1.34826 * 116.99900 * 354.48945 * 16 15 14 18 18 H 1.08007 * 119.99883 * 5.05637 * 17 16 15 19 19 C 1.38655 * 119.99933 * 185.05845 * 17 16 15 20 20 N 1.31564 * 119.99636 * 180.02562 * 19 17 16 21 21 Si 1.86794 * 119.99919 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.46975 * 90.00378 * 21 19 17 23 23 H 1.48505 * 109.47103 * 210.00067 * 21 19 17 24 24 H 1.48495 * 109.47572 * 330.00111 * 21 19 17 25 25 C 1.38080 * 119.96149 * 90.00546 * 11 10 9 26 26 H 1.08999 * 109.47256 * 60.00537 * 1 2 3 27 27 H 1.09000 * 109.46919 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47195 * 300.00090 * 1 2 3 29 29 H 1.09002 * 109.47267 * 239.99899 * 2 1 3 30 30 H 1.09002 * 109.47286 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47205 * 299.99632 * 3 2 1 32 32 H 1.08992 * 109.47297 * 59.99972 * 3 2 1 33 33 H 0.96704 * 113.99688 * 59.99437 * 6 4 2 34 34 H 0.96998 * 120.00309 * 0.02562 * 9 7 4 35 35 H 1.09004 * 109.46647 * 60.00669 * 10 9 7 36 36 H 1.08994 * 109.47316 * 300.00691 * 10 9 7 37 37 H 1.07999 * 119.93168 * 0.02562 * 12 11 10 38 38 H 1.08004 * 119.96307 * 180.25437 * 13 12 11 39 39 H 1.07998 * 120.03181 * 179.71958 * 14 13 12 40 40 H 0.97002 * 119.99366 * 180.02562 * 20 19 17 41 41 H 1.08006 * 120.03787 * 359.95607 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 3.1263 -0.6442 1.2952 6 8 1.4702 -0.1188 2.4131 7 6 1.6414 -2.1732 1.1890 8 8 0.8660 -2.6237 2.0056 9 7 2.1465 -2.9713 0.2275 10 6 1.7594 -4.3831 0.1692 11 6 2.4578 -5.0480 -0.9889 12 6 1.8566 -5.0763 -2.2343 13 6 2.4964 -5.6813 -3.3005 14 6 3.7338 -6.2686 -3.1222 15 6 4.3375 -6.2465 -1.8721 16 8 5.5534 -6.8234 -1.6936 17 6 6.0696 -7.4995 -2.7396 18 1 5.5581 -7.4951 -3.6909 19 6 7.2570 -8.2005 -2.5941 20 7 7.7609 -8.8599 -3.6150 21 14 8.1419 -8.2075 -0.9490 22 1 7.6572 -9.3483 -0.1312 23 1 9.6034 -8.3451 -1.1736 24 1 7.8686 -6.9348 -0.2344 25 6 3.6946 -5.6334 -0.8043 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 0.5040 -0.1507 2.4395 34 1 2.7668 -2.6112 -0.4254 35 1 0.6804 -4.4587 0.0342 36 1 2.0448 -4.8768 1.0981 37 1 0.8873 -4.6214 -2.3752 38 1 2.0263 -5.6982 -4.2727 39 1 4.2310 -6.7449 -3.9543 40 1 8.5914 -9.3506 -3.5130 41 1 4.1619 -5.6143 0.1693 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323560309.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:12 Heat of formation + Delta-G solvation = -124.871619 kcal Electronic energy + Delta-G solvation = -22965.282412 eV Core-core repulsion = 19423.567039 eV Total energy + Delta-G solvation = -3541.715373 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.40651 -40.85859 -38.80562 -38.07412 -35.93915 -34.72325 -34.45598 -32.34847 -31.03690 -28.88050 -28.11472 -27.32686 -26.27879 -23.35218 -22.42610 -22.17772 -21.02617 -19.78946 -19.31947 -18.53482 -17.51702 -17.35849 -16.90297 -16.73793 -16.25984 -15.90251 -15.74853 -15.60367 -15.36547 -14.85506 -14.61061 -14.33087 -14.16677 -13.94227 -13.82783 -13.39989 -13.27766 -13.11879 -12.95933 -12.68465 -12.60918 -12.48444 -12.39339 -12.12556 -11.95375 -11.84377 -11.49457 -11.33298 -10.93460 -10.60802 -10.17069 -9.78687 -9.13617 -8.51410 -6.24219 0.33235 0.63419 1.31174 1.34313 1.50242 1.50607 2.16279 2.26419 2.77543 2.96943 3.14077 3.28869 3.66349 3.71113 3.79641 3.90965 4.04746 4.18638 4.25170 4.39509 4.48164 4.54154 4.60032 4.64119 4.70112 4.81116 4.91163 4.93378 5.00604 5.16981 5.17220 5.30705 5.33042 5.36590 5.44243 5.61321 5.67539 5.73914 5.87973 6.17817 6.37492 6.60989 6.83250 7.12698 7.57060 8.60061 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.021348 B = 0.003175 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.284664 B = 8817.597836 C = 9230.440146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.117 4.117 3 C -0.141 4.141 4 C 0.099 3.901 5 H 0.136 0.864 6 O -0.549 6.549 7 C 0.486 3.514 8 O -0.577 6.577 9 N -0.709 5.709 10 C 0.172 3.828 11 C -0.061 4.061 12 C -0.157 4.157 13 C -0.073 4.073 14 C -0.228 4.228 15 C 0.120 3.880 16 O -0.245 6.245 17 C -0.399 4.399 18 H 0.084 0.916 19 C 0.012 3.988 20 N -0.922 5.922 21 Si 0.968 3.032 22 H -0.268 1.268 23 H -0.268 1.268 24 H -0.263 1.263 25 C -0.171 4.171 26 H 0.076 0.924 27 H 0.043 0.957 28 H 0.064 0.936 29 H 0.095 0.905 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.386 0.614 34 H 0.414 0.586 35 H 0.087 0.913 36 H 0.066 0.934 37 H 0.150 0.850 38 H 0.145 0.855 39 H 0.110 0.890 40 H 0.285 0.715 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.815 18.628 5.328 23.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.136 4.136 3 C -0.198 4.198 4 C 0.036 3.964 5 H 0.154 0.846 6 O -0.355 6.355 7 C 0.273 3.727 8 O -0.457 6.457 9 N -0.362 5.362 10 C 0.049 3.951 11 C -0.061 4.061 12 C -0.176 4.176 13 C -0.091 4.091 14 C -0.247 4.247 15 C 0.071 3.929 16 O -0.153 6.153 17 C -0.475 4.475 18 H 0.102 0.898 19 C -0.187 4.187 20 N -0.563 5.563 21 Si 0.790 3.210 22 H -0.193 1.193 23 H -0.192 1.192 24 H -0.187 1.187 25 C -0.191 4.191 26 H 0.095 0.905 27 H 0.062 0.938 28 H 0.083 0.917 29 H 0.113 0.887 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.237 0.763 34 H 0.250 0.750 35 H 0.105 0.895 36 H 0.084 0.916 37 H 0.168 0.832 38 H 0.162 0.838 39 H 0.128 0.872 40 H 0.094 0.906 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -13.446 18.292 6.177 23.527 hybrid contribution 0.503 -0.801 -0.400 1.027 sum -12.943 17.491 5.777 22.512 Atomic orbital electron populations 1.21883 0.94390 1.01648 1.03368 1.21756 0.97115 0.98217 0.96546 1.21758 1.01460 0.94039 1.02585 1.22077 1.00646 0.86050 0.87598 0.84643 1.86557 1.27156 1.79352 1.42476 1.22089 0.80234 0.90337 0.80001 1.90698 1.37027 1.76950 1.41059 1.46070 1.48195 1.09752 1.32198 1.20052 0.99040 0.80585 0.95407 1.19449 0.93087 0.98368 0.95241 1.21029 1.01480 1.03606 0.91502 1.21150 0.92783 0.95046 1.00104 1.21403 0.99070 1.07208 0.97036 1.19572 0.85135 0.93577 0.94658 1.83522 1.29566 1.62582 1.39629 1.20710 1.07801 1.28564 0.90401 0.89839 1.25239 0.96762 0.94504 1.02176 1.69727 1.21868 1.32374 1.32338 0.85259 0.77672 0.79544 0.78517 1.19303 1.19246 1.18689 1.20282 0.96670 1.04888 0.97234 0.90540 0.93774 0.91747 0.88689 0.91969 0.91298 0.92335 0.76293 0.74978 0.89528 0.91600 0.83212 0.83771 0.87219 0.90569 0.86049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 8.58 71.98 0.62 -1.20 16 2 C -0.12 -1.35 2.73 -10.79 -0.03 -1.38 16 3 C -0.14 -1.43 9.09 71.98 0.65 -0.78 16 4 C 0.10 1.60 3.13 29.85 0.09 1.69 16 5 H 0.14 1.88 8.14 -2.39 -0.02 1.86 16 6 O -0.55 -10.50 12.43 -129.99 -1.62 -12.11 16 7 C 0.49 10.60 6.15 87.66 0.54 11.14 16 8 O -0.58 -17.20 16.32 15.95 0.26 -16.94 16 9 N -0.71 -14.00 5.45 -466.78 -2.54 -16.55 16 10 C 0.17 4.00 5.80 85.63 0.50 4.49 16 11 C -0.06 -1.67 5.25 -19.88 -0.10 -1.77 16 12 C -0.16 -3.99 9.70 22.30 0.22 -3.77 16 13 C -0.07 -2.19 10.04 22.25 0.22 -1.97 16 14 C -0.23 -9.21 9.17 22.39 0.21 -9.00 16 15 C 0.12 5.25 6.65 22.58 0.15 5.40 16 16 O -0.25 -12.87 8.59 -22.78 -0.20 -13.06 16 17 C -0.40 -22.82 9.95 67.92 0.68 -22.14 16 18 H 0.08 4.98 5.44 -2.91 -0.02 4.96 16 19 C 0.01 0.67 5.49 84.83 0.47 1.14 16 20 N -0.92 -54.21 13.96 21.61 0.30 -53.91 16 21 Si 0.97 44.75 28.62 68.60 1.96 46.71 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 23 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 24 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 25 C -0.17 -6.06 9.65 22.39 0.22 -5.85 16 26 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.04 0.65 7.38 -2.39 -0.02 0.64 16 28 H 0.06 0.69 6.72 -2.39 -0.02 0.68 16 29 H 0.09 0.94 7.77 -2.39 -0.02 0.92 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.06 0.67 7.82 -2.39 -0.02 0.65 16 33 H 0.39 6.15 6.94 -74.05 -0.51 5.63 16 34 H 0.41 6.68 8.17 -92.71 -0.76 5.92 16 35 H 0.09 1.87 8.08 -2.38 -0.02 1.85 16 36 H 0.07 1.69 8.08 -2.39 -0.02 1.67 16 37 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 38 H 0.14 3.44 8.06 -2.91 -0.02 3.41 16 39 H 0.11 4.95 5.64 -2.91 -0.02 4.93 16 40 H 0.28 15.37 8.31 -92.71 -0.77 14.60 16 41 H 0.12 4.18 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -69.37 345.14 2.38 -66.99 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: -0.21 Total: 22.87 kcal Atomic # 6 Polarization: -28.42 SS G_CDS: 4.42 Total: -24.00 kcal Atomic # 7 Polarization: -68.22 SS G_CDS: -2.24 Total: -70.46 kcal Atomic # 8 Polarization: -40.56 SS G_CDS: -1.55 Total: -42.11 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.96 Total: 46.71 kcal Total: -69.37 2.38 -66.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323560309.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.877 kcal (2) G-P(sol) polarization free energy of solvation -69.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds