Wall clock time and date at job start Tue Mar 31 2020 07:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47161 * 2 1 4 4 C 1.52997 * 109.47345 * 120.00174 * 2 1 3 5 5 H 1.09004 * 109.46859 * 59.99712 * 4 2 1 6 6 O 1.42900 * 109.47184 * 300.00310 * 4 2 1 7 7 C 1.50700 * 109.47224 * 179.97438 * 4 2 1 8 8 O 1.21278 * 119.99504 * 114.99912 * 7 4 2 9 9 N 1.34779 * 120.00144 * 295.00261 * 7 4 2 10 10 C 1.46494 * 119.99708 * 179.97438 * 9 7 4 11 11 C 1.50703 * 109.46905 * 180.02562 * 10 9 7 12 12 C 1.38326 * 119.96036 * 269.71965 * 11 10 9 13 13 C 1.38280 * 120.13593 * 180.27023 * 12 11 10 14 14 C 1.38125 * 120.06813 * 0.02562 * 13 12 11 15 15 C 1.38857 * 119.92941 * 359.97438 * 14 13 12 16 16 O 1.35759 * 120.06714 * 179.97438 * 15 14 13 17 17 C 1.34831 * 116.99718 * 354.48542 * 16 15 14 18 18 H 1.07998 * 120.00057 * 5.06548 * 17 16 15 19 19 C 1.38654 * 119.99581 * 185.05723 * 17 16 15 20 20 N 1.31561 * 120.00320 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99982 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46759 * 60.00279 * 21 19 17 23 23 H 1.48492 * 109.47092 * 180.02562 * 21 19 17 24 24 H 1.48493 * 109.47168 * 300.00453 * 21 19 17 25 25 C 1.38074 * 119.96544 * 89.99914 * 11 10 9 26 26 H 1.09005 * 109.46942 * 299.99929 * 1 2 3 27 27 H 1.09002 * 109.47684 * 59.99922 * 1 2 3 28 28 H 1.09004 * 109.47378 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46942 * 240.00071 * 2 1 3 30 30 H 1.08993 * 109.47447 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47246 * 300.00245 * 3 2 1 32 32 H 1.09005 * 109.47135 * 60.00189 * 3 2 1 33 33 H 0.96702 * 113.99277 * 299.99428 * 6 4 2 34 34 H 0.96996 * 119.99770 * 359.97438 * 9 7 4 35 35 H 1.08996 * 109.47638 * 60.00041 * 10 9 7 36 36 H 1.08994 * 109.47133 * 299.99741 * 10 9 7 37 37 H 1.07995 * 119.93590 * 0.26096 * 12 11 10 38 38 H 1.07998 * 119.96668 * 180.02562 * 13 12 11 39 39 H 1.08000 * 120.03457 * 179.97438 * 14 13 12 40 40 H 0.96999 * 119.99759 * 180.02562 * 20 19 17 41 41 H 1.08000 * 120.03806 * 359.69747 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6766 -1.7489 1.2491 6 8 1.5637 -0.0477 2.4160 7 6 3.5470 -0.7218 1.2488 8 8 4.1538 -0.1194 2.1090 9 7 4.2205 -1.3916 0.2926 10 6 5.6854 -1.3916 0.2920 11 6 6.1873 -2.2064 -0.8722 12 6 6.4231 -3.5605 -0.7170 13 6 6.8889 -4.3105 -1.7813 14 6 7.1207 -3.7090 -3.0029 15 6 6.8849 -2.3499 -3.1618 16 8 7.1121 -1.7557 -4.3611 17 6 7.6738 -2.5148 -5.3235 18 1 7.8464 -3.5666 -5.1497 19 6 8.0297 -1.9449 -6.5364 20 7 7.8198 -0.6635 -6.7480 21 14 8.8073 -2.9966 -7.8702 22 1 7.8736 -4.0882 -8.2469 23 1 9.0923 -2.1556 -9.0603 24 1 10.0744 -3.5819 -7.3632 25 6 6.4167 -1.5993 -2.0909 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.8491 0.8739 2.4821 34 1 3.7352 -1.8736 -0.3951 35 1 6.0492 -1.8256 1.2233 36 1 6.0487 -0.3679 0.2020 37 1 6.2433 -4.0330 0.2373 38 1 7.0717 -5.3676 -1.6572 39 1 7.4849 -4.2952 -3.8337 40 1 8.0684 -0.2649 -7.5966 41 1 6.2320 -0.5421 -2.2115 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324741917.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:14 Heat of formation + Delta-G solvation = -106.098789 kcal Electronic energy + Delta-G solvation = -22999.253063 eV Core-core repulsion = 19458.351741 eV Total energy + Delta-G solvation = -3540.901322 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.36271 -39.17057 -37.49569 -36.71435 -34.77660 -33.88749 -32.37571 -30.97047 -29.25675 -27.83335 -27.46967 -25.68917 -24.89018 -21.78175 -21.40769 -20.89047 -20.16574 -18.36361 -17.56513 -17.01243 -16.55829 -16.47784 -15.42544 -15.21155 -14.98175 -14.62718 -14.49822 -14.20766 -13.73209 -13.67975 -13.40591 -13.20235 -12.71882 -12.58732 -12.46431 -12.34771 -12.19764 -11.82581 -11.70687 -11.44786 -11.39026 -11.19469 -10.96977 -10.87674 -10.76554 -10.69035 -10.52686 -9.61316 -9.45696 -9.07338 -8.92491 -8.28927 -7.37839 -6.52905 -4.12722 1.84559 2.21922 2.51126 3.07373 3.08729 3.12027 3.25425 3.89308 4.06684 4.40671 4.44064 4.53971 4.65029 4.85429 4.92206 5.02921 5.21562 5.23005 5.27506 5.41862 5.48941 5.59450 5.62939 5.68769 5.79400 5.80063 5.85725 5.99877 6.02710 6.02880 6.19962 6.38733 6.50395 6.76494 6.94613 7.13212 7.21668 7.24267 7.30923 7.49994 7.66351 7.90926 8.12969 8.92293 9.60192 10.64639 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.020454 B = 0.003212 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.568358 B = 8714.613869 C = 9497.634146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.125 4.125 3 C -0.156 4.156 4 C 0.096 3.904 5 H 0.123 0.877 6 O -0.537 6.537 7 C 0.484 3.516 8 O -0.540 6.540 9 N -0.716 5.716 10 C 0.167 3.833 11 C -0.074 4.074 12 C -0.196 4.196 13 C -0.075 4.075 14 C -0.225 4.225 15 C 0.150 3.850 16 O -0.176 6.176 17 C -0.395 4.395 18 H 0.092 0.908 19 C 0.041 3.959 20 N -0.861 5.861 21 Si 0.941 3.059 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.269 1.269 25 C -0.171 4.171 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.087 0.913 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.381 0.619 34 H 0.404 0.596 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.128 0.872 40 H 0.271 0.729 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.735 -1.474 10.705 15.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.144 4.144 3 C -0.214 4.214 4 C 0.033 3.967 5 H 0.140 0.860 6 O -0.342 6.342 7 C 0.270 3.730 8 O -0.417 6.417 9 N -0.369 5.369 10 C 0.044 3.956 11 C -0.074 4.074 12 C -0.215 4.215 13 C -0.094 4.094 14 C -0.245 4.245 15 C 0.096 3.904 16 O -0.079 6.079 17 C -0.471 4.471 18 H 0.109 0.891 19 C -0.164 4.164 20 N -0.495 5.495 21 Si 0.766 3.234 22 H -0.195 1.195 23 H -0.202 1.202 24 H -0.195 1.195 25 C -0.191 4.191 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.105 0.895 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.231 0.769 34 H 0.238 0.762 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.146 0.854 40 H 0.081 0.919 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -10.570 -1.179 11.170 15.423 hybrid contribution 0.621 -0.402 -1.274 1.473 sum -9.949 -1.581 9.896 14.122 Atomic orbital electron populations 1.21751 0.93582 1.02242 1.02327 1.21783 0.97605 0.97513 0.97504 1.21891 1.01592 0.95384 1.02502 1.21931 0.89287 0.98665 0.86781 0.85966 1.86556 1.74897 1.30139 1.42645 1.21571 0.91111 0.78944 0.81386 1.90707 1.70039 1.43741 1.37245 1.46188 1.07575 1.52924 1.30191 1.20171 0.78999 0.99865 0.96566 1.19254 1.00938 0.93864 0.93361 1.20481 1.08794 0.93430 0.98805 1.20751 0.97352 0.98595 0.92670 1.21247 1.09366 0.95186 0.98705 1.19320 0.93007 0.91180 0.86844 1.83982 1.68824 1.38706 1.16378 1.21282 1.40159 0.93120 0.92523 0.89069 1.25296 0.96963 0.96349 0.97784 1.70025 1.43905 1.10648 1.24930 0.85778 0.79466 0.78944 0.79251 1.19454 1.20216 1.19452 1.20072 1.08297 0.99575 0.91166 0.91840 0.92274 0.92422 0.89493 0.92179 0.91545 0.92328 0.76945 0.76179 0.90905 0.90858 0.87501 0.87252 0.85444 0.91864 0.86436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.05 37.16 0.34 -0.73 16 2 C -0.12 -1.07 2.77 -90.62 -0.25 -1.32 16 3 C -0.16 -1.42 8.64 37.15 0.32 -1.10 16 4 C 0.10 0.95 3.19 -27.88 -0.09 0.86 16 5 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 6 O -0.54 -5.86 12.28 -55.08 -0.68 -6.54 16 7 C 0.48 6.19 5.90 -10.98 -0.06 6.13 16 8 O -0.54 -8.87 16.33 -14.29 -0.23 -9.10 16 9 N -0.72 -8.79 5.51 -61.48 -0.34 -9.12 16 10 C 0.17 2.37 5.80 -5.20 -0.03 2.34 16 11 C -0.07 -1.20 5.25 -104.65 -0.55 -1.75 16 12 C -0.20 -3.11 9.70 -39.53 -0.38 -3.49 16 13 C -0.08 -1.28 10.04 -39.61 -0.40 -1.68 16 14 C -0.23 -4.60 9.17 -39.39 -0.36 -4.97 16 15 C 0.15 3.43 6.65 -39.11 -0.26 3.17 16 16 O -0.18 -4.81 9.76 0.02 0.00 -4.81 16 17 C -0.39 -10.65 9.49 30.89 0.29 -10.36 16 18 H 0.09 2.26 5.20 -52.49 -0.27 1.99 16 19 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 20 N -0.86 -24.58 13.67 55.48 0.76 -23.82 16 21 Si 0.94 19.89 29.55 -169.99 -5.02 14.86 16 22 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 23 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 24 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 25 C -0.17 -3.36 9.64 -39.40 -0.38 -3.74 16 26 H 0.06 0.49 7.68 -51.93 -0.40 0.09 16 27 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.09 0.73 7.92 -51.93 -0.41 0.32 16 30 H 0.06 0.66 7.22 -51.93 -0.37 0.28 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.47 6.78 -51.93 -0.35 0.12 16 33 H 0.38 3.57 7.08 45.56 0.32 3.89 16 34 H 0.40 4.32 8.25 -40.82 -0.34 3.98 16 35 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 36 H 0.07 1.09 8.08 -51.93 -0.42 0.67 16 37 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 38 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 39 H 0.13 2.61 5.64 -52.49 -0.30 2.32 16 40 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.12 2.28 8.06 -52.49 -0.42 1.85 16 LS Contribution 346.18 15.07 5.22 5.22 Total: -1.00 -31.46 346.18 -7.26 -38.73 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -5.05 Total: 10.24 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: -1.91 Total: -15.64 kcal Atomic # 7 Polarization: -33.36 SS G_CDS: 0.42 Total: -32.94 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.91 Total: -20.46 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.46 -7.26 -38.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324741917.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.372 kcal (2) G-P(sol) polarization free energy of solvation -31.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds