Wall clock time and date at job start Tue Mar 31 2020 07:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47161 * 2 1 4 4 C 1.52997 * 109.47345 * 120.00174 * 2 1 3 5 5 H 1.09004 * 109.46859 * 59.99712 * 4 2 1 6 6 O 1.42900 * 109.47184 * 300.00310 * 4 2 1 7 7 C 1.50700 * 109.47224 * 179.97438 * 4 2 1 8 8 O 1.21278 * 119.99504 * 114.99912 * 7 4 2 9 9 N 1.34779 * 120.00144 * 295.00261 * 7 4 2 10 10 C 1.46494 * 119.99708 * 179.97438 * 9 7 4 11 11 C 1.50703 * 109.46905 * 180.02562 * 10 9 7 12 12 C 1.38326 * 119.96036 * 269.71965 * 11 10 9 13 13 C 1.38280 * 120.13593 * 180.27023 * 12 11 10 14 14 C 1.38125 * 120.06813 * 0.02562 * 13 12 11 15 15 C 1.38857 * 119.92941 * 359.97438 * 14 13 12 16 16 O 1.35759 * 120.06714 * 179.97438 * 15 14 13 17 17 C 1.34831 * 116.99718 * 354.48542 * 16 15 14 18 18 H 1.07998 * 120.00057 * 5.06548 * 17 16 15 19 19 C 1.38654 * 119.99581 * 185.05723 * 17 16 15 20 20 N 1.31561 * 120.00320 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99982 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46759 * 60.00279 * 21 19 17 23 23 H 1.48492 * 109.47092 * 180.02562 * 21 19 17 24 24 H 1.48493 * 109.47168 * 300.00453 * 21 19 17 25 25 C 1.38074 * 119.96544 * 89.99914 * 11 10 9 26 26 H 1.09005 * 109.46942 * 299.99929 * 1 2 3 27 27 H 1.09002 * 109.47684 * 59.99922 * 1 2 3 28 28 H 1.09004 * 109.47378 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46942 * 240.00071 * 2 1 3 30 30 H 1.08993 * 109.47447 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47246 * 300.00245 * 3 2 1 32 32 H 1.09005 * 109.47135 * 60.00189 * 3 2 1 33 33 H 0.96702 * 113.99277 * 299.99428 * 6 4 2 34 34 H 0.96996 * 119.99770 * 359.97438 * 9 7 4 35 35 H 1.08996 * 109.47638 * 60.00041 * 10 9 7 36 36 H 1.08994 * 109.47133 * 299.99741 * 10 9 7 37 37 H 1.07995 * 119.93590 * 0.26096 * 12 11 10 38 38 H 1.07998 * 119.96668 * 180.02562 * 13 12 11 39 39 H 1.08000 * 120.03457 * 179.97438 * 14 13 12 40 40 H 0.96999 * 119.99759 * 180.02562 * 20 19 17 41 41 H 1.08000 * 120.03806 * 359.69747 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6766 -1.7489 1.2491 6 8 1.5637 -0.0477 2.4160 7 6 3.5470 -0.7218 1.2488 8 8 4.1538 -0.1194 2.1090 9 7 4.2205 -1.3916 0.2926 10 6 5.6854 -1.3916 0.2920 11 6 6.1873 -2.2064 -0.8722 12 6 6.4231 -3.5605 -0.7170 13 6 6.8889 -4.3105 -1.7813 14 6 7.1207 -3.7090 -3.0029 15 6 6.8849 -2.3499 -3.1618 16 8 7.1121 -1.7557 -4.3611 17 6 7.6738 -2.5148 -5.3235 18 1 7.8464 -3.5666 -5.1497 19 6 8.0297 -1.9449 -6.5364 20 7 7.8198 -0.6635 -6.7480 21 14 8.8073 -2.9966 -7.8702 22 1 7.8736 -4.0882 -8.2469 23 1 9.0923 -2.1556 -9.0603 24 1 10.0744 -3.5819 -7.3632 25 6 6.4167 -1.5993 -2.0909 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.8491 0.8739 2.4821 34 1 3.7352 -1.8736 -0.3951 35 1 6.0492 -1.8256 1.2233 36 1 6.0487 -0.3679 0.2020 37 1 6.2433 -4.0330 0.2373 38 1 7.0717 -5.3676 -1.6572 39 1 7.4849 -4.2952 -3.8337 40 1 8.0684 -0.2649 -7.5966 41 1 6.2320 -0.5421 -2.2115 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324741917.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:14 Heat of formation + Delta-G solvation = -127.920179 kcal Electronic energy + Delta-G solvation = -23000.199310 eV Core-core repulsion = 19458.351741 eV Total energy + Delta-G solvation = -3541.847569 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.40314 -40.75193 -38.71434 -38.03755 -35.93451 -34.73815 -34.28151 -32.32303 -30.82383 -28.87001 -28.14831 -27.42067 -26.25797 -23.28221 -22.54807 -22.23624 -21.02764 -19.76206 -19.10158 -18.50692 -17.51114 -17.39155 -16.79450 -16.62083 -16.13899 -16.06961 -15.87905 -15.49472 -15.31123 -14.95574 -14.49247 -14.25721 -14.01396 -13.90154 -13.65981 -13.34534 -13.31610 -13.03570 -13.01849 -12.65336 -12.53670 -12.40107 -12.28400 -12.16815 -12.14364 -11.85968 -11.50457 -11.22446 -10.81566 -10.61387 -10.18310 -9.75325 -9.04256 -8.47237 -6.15976 0.37036 0.69596 1.35883 1.45862 1.49615 1.51747 2.16398 2.18146 2.84264 3.14360 3.27903 3.39031 3.66545 3.69945 3.82975 3.88629 4.08157 4.15835 4.29360 4.38733 4.51445 4.52875 4.55448 4.65455 4.72095 4.77493 4.88186 4.98652 5.00305 5.11073 5.15241 5.24487 5.27988 5.30766 5.42415 5.61239 5.69491 5.70799 6.00963 6.15242 6.36428 6.59449 6.97513 7.11923 7.77254 8.75446 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.020454 B = 0.003212 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.568358 B = 8714.613869 C = 9497.634146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.120 4.120 3 C -0.158 4.158 4 C 0.103 3.897 5 H 0.145 0.855 6 O -0.546 6.546 7 C 0.486 3.514 8 O -0.578 6.578 9 N -0.709 5.709 10 C 0.172 3.828 11 C -0.059 4.059 12 C -0.169 4.169 13 C -0.069 4.069 14 C -0.234 4.234 15 C 0.113 3.887 16 O -0.232 6.232 17 C -0.414 4.414 18 H 0.104 0.896 19 C -0.022 4.022 20 N -0.920 5.920 21 Si 1.017 2.983 22 H -0.256 1.256 23 H -0.274 1.274 24 H -0.258 1.258 25 C -0.181 4.181 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.090 0.910 30 H 0.036 0.964 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.386 0.614 34 H 0.413 0.587 35 H 0.085 0.915 36 H 0.062 0.938 37 H 0.148 0.852 38 H 0.149 0.851 39 H 0.121 0.879 40 H 0.272 0.728 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.698 -4.015 12.343 17.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.139 4.139 3 C -0.215 4.215 4 C 0.041 3.959 5 H 0.162 0.838 6 O -0.352 6.352 7 C 0.273 3.727 8 O -0.458 6.458 9 N -0.362 5.362 10 C 0.049 3.951 11 C -0.059 4.059 12 C -0.188 4.188 13 C -0.087 4.087 14 C -0.254 4.254 15 C 0.063 3.937 16 O -0.138 6.138 17 C -0.490 4.490 18 H 0.121 0.879 19 C -0.219 4.219 20 N -0.558 5.558 21 Si 0.836 3.164 22 H -0.180 1.180 23 H -0.198 1.198 24 H -0.183 1.183 25 C -0.200 4.200 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.108 0.892 30 H 0.055 0.945 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.236 0.764 34 H 0.250 0.750 35 H 0.103 0.897 36 H 0.080 0.920 37 H 0.165 0.835 38 H 0.166 0.834 39 H 0.138 0.862 40 H 0.081 0.919 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -11.563 -3.759 12.851 17.691 hybrid contribution 0.821 0.336 -1.423 1.677 sum -10.742 -3.422 11.428 16.053 Atomic orbital electron populations 1.21726 0.92352 1.02950 1.02511 1.21766 0.98482 0.96786 0.96882 1.21902 1.00045 0.96276 1.03256 1.22041 0.86904 0.99924 0.87056 0.83810 1.86541 1.74802 1.30686 1.43172 1.22128 0.92306 0.77810 0.80469 1.90693 1.71051 1.45275 1.38794 1.46069 1.06744 1.52930 1.30445 1.20038 0.80221 0.98997 0.95825 1.19424 0.99526 0.94526 0.92445 1.20996 1.05119 0.92747 0.99949 1.21163 0.95805 1.00568 0.91141 1.21382 1.09577 0.94201 1.00227 1.19852 0.94607 0.92768 0.86514 1.83948 1.71514 1.40212 1.18154 1.21788 1.40322 0.93847 0.93089 0.87909 1.26565 0.97427 0.97736 1.00196 1.70177 1.46823 1.12948 1.25858 0.84671 0.78818 0.77210 0.75701 1.17975 1.19845 1.18260 1.20203 1.08643 0.99305 0.91897 0.91971 0.91801 0.91467 0.89203 0.94487 0.91110 0.91369 0.76377 0.75037 0.89664 0.91971 0.83469 0.83350 0.86150 0.91873 0.87458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.05 71.98 0.65 -1.10 16 2 C -0.12 -1.83 2.77 -10.80 -0.03 -1.86 16 3 C -0.16 -2.74 8.64 71.98 0.62 -2.12 16 4 C 0.10 1.82 3.19 29.85 0.10 1.91 16 5 H 0.14 1.94 8.14 -2.38 -0.02 1.92 16 6 O -0.55 -10.89 12.28 -130.00 -1.60 -12.49 16 7 C 0.49 11.60 5.90 87.66 0.52 12.12 16 8 O -0.58 -18.40 16.33 15.96 0.26 -18.14 16 9 N -0.71 -15.90 5.51 -466.81 -2.57 -18.48 16 10 C 0.17 4.55 5.80 85.64 0.50 5.04 16 11 C -0.06 -1.79 5.25 -19.88 -0.10 -1.89 16 12 C -0.17 -4.64 9.70 22.30 0.22 -4.42 16 13 C -0.07 -2.10 10.04 22.25 0.22 -1.87 16 14 C -0.23 -9.43 9.17 22.39 0.21 -9.22 16 15 C 0.11 5.30 6.65 22.58 0.15 5.45 16 16 O -0.23 -13.47 9.76 -22.85 -0.22 -13.69 16 17 C -0.41 -23.37 9.49 67.92 0.64 -22.73 16 18 H 0.10 5.26 5.20 -2.91 -0.02 5.24 16 19 C -0.02 -1.19 5.49 84.83 0.47 -0.73 16 20 N -0.92 -55.46 13.67 21.61 0.30 -55.16 16 21 Si 1.02 41.63 29.55 68.60 2.03 43.66 16 22 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 23 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 24 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 25 C -0.18 -7.19 9.64 22.39 0.22 -6.97 16 26 H 0.06 0.82 7.68 -2.38 -0.02 0.80 16 27 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 29 H 0.09 1.34 7.92 -2.38 -0.02 1.32 16 30 H 0.04 0.81 7.22 -2.39 -0.02 0.79 16 31 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.07 1.03 6.78 -2.38 -0.02 1.01 16 33 H 0.39 6.77 7.08 -74.06 -0.52 6.24 16 34 H 0.41 7.79 8.25 -92.71 -0.76 7.03 16 35 H 0.09 2.11 8.08 -2.39 -0.02 2.09 16 36 H 0.06 1.81 8.08 -2.39 -0.02 1.79 16 37 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 38 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 39 H 0.12 4.94 5.64 -2.91 -0.02 4.93 16 40 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 41 H 0.11 4.39 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -72.60 346.18 2.33 -70.27 By element: Atomic # 1 Polarization: 32.66 SS G_CDS: -0.23 Total: 32.43 kcal Atomic # 6 Polarization: -32.78 SS G_CDS: 4.37 Total: -28.41 kcal Atomic # 7 Polarization: -71.36 SS G_CDS: -2.28 Total: -73.64 kcal Atomic # 8 Polarization: -42.76 SS G_CDS: -1.56 Total: -44.32 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -72.60 2.33 -70.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324741917.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.652 kcal (2) G-P(sol) polarization free energy of solvation -72.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds