Wall clock time and date at job start Tue Mar 31 2020 07:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47303 * 2 1 4 4 O 1.42910 * 109.47125 * 240.00007 * 2 1 3 5 5 C 1.52998 * 109.47200 * 120.00353 * 2 1 3 6 6 C 1.53002 * 109.47269 * 184.99728 * 5 2 1 7 7 C 1.50693 * 109.47013 * 179.97438 * 6 5 2 8 8 O 1.21288 * 120.00547 * 0.02562 * 7 6 5 9 9 N 1.34783 * 120.00115 * 180.02562 * 7 6 5 10 10 C 1.39981 * 120.00350 * 175.49199 * 9 7 6 11 11 C 1.38922 * 120.00283 * 215.12488 * 10 9 7 12 12 C 1.38008 * 120.00014 * 180.02562 * 11 10 9 13 13 C 1.38910 * 119.99976 * 0.02562 * 12 11 10 14 14 O 1.35774 * 119.99471 * 179.97438 * 13 12 11 15 15 C 1.34808 * 117.00313 * 5.34797 * 14 13 12 16 16 H 1.08002 * 120.00230 * 354.95457 * 15 14 13 17 17 C 1.38633 * 120.00210 * 174.96513 * 15 14 13 18 18 N 1.31575 * 119.99815 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00323 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47187 * 59.99558 * 19 17 15 21 21 H 1.48503 * 109.47384 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46741 * 299.99567 * 19 17 15 23 23 C 1.38907 * 120.00174 * 0.25692 * 13 12 11 24 24 C 1.37999 * 120.00277 * 359.44446 * 23 13 12 25 25 H 1.08994 * 109.47303 * 300.00062 * 1 2 3 26 26 H 1.09010 * 109.47080 * 59.99773 * 1 2 3 27 27 H 1.08996 * 109.47537 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47097 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47443 * 299.99963 * 3 2 1 30 30 H 1.08996 * 109.46993 * 60.00290 * 3 2 1 31 31 H 0.96697 * 114.00152 * 300.00473 * 4 2 1 32 32 H 1.08994 * 109.47102 * 64.99911 * 5 2 1 33 33 H 1.08996 * 109.46779 * 304.99949 * 5 2 1 34 34 H 1.09008 * 109.46923 * 59.99986 * 6 5 2 35 35 H 1.08997 * 109.46957 * 300.00119 * 6 5 2 36 36 H 0.97001 * 119.99577 * 355.49141 * 9 7 6 37 37 H 1.07997 * 119.99847 * 359.97438 * 11 10 9 38 38 H 1.07994 * 119.99782 * 179.97438 * 12 11 10 39 39 H 0.97000 * 119.99968 * 180.02562 * 18 17 15 40 40 H 1.08008 * 119.99608 * 179.70477 * 23 13 12 41 41 H 1.07999 * 119.99955 * 180.28029 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 -1.1669 5 6 2.0400 -0.7213 1.2492 6 6 3.5648 -0.6134 1.3136 7 6 4.0671 -1.3233 2.5443 8 8 3.2827 -1.8630 3.2958 9 7 5.3879 -1.3587 2.8101 10 6 5.8473 -1.9353 4.0000 11 6 6.9553 -1.4031 4.6474 12 6 7.4084 -1.9719 5.8203 13 6 6.7571 -3.0771 6.3532 14 8 7.2033 -3.6370 7.5068 15 6 8.2119 -3.0077 8.1425 16 1 8.6821 -2.1472 7.6899 17 6 8.6459 -3.4653 9.3771 18 7 8.0729 -4.5135 9.9287 19 14 10.0439 -2.5938 10.2576 20 1 9.6644 -1.1808 10.5118 21 1 10.3150 -3.2732 11.5499 22 1 11.2635 -2.6343 9.4111 23 6 5.6528 -3.6129 5.7028 24 6 5.1958 -3.0404 4.5333 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.7210 -1.5952 -1.2330 32 1 1.7516 -1.7715 1.2055 33 1 1.6054 -0.2618 2.1369 34 1 3.8532 0.4369 1.3573 35 1 3.9994 -1.0729 0.4259 36 1 6.0202 -0.9845 2.1768 37 1 7.4624 -0.5446 4.2324 38 1 8.2700 -1.5584 6.3233 39 1 8.3763 -4.8334 10.7927 40 1 5.1493 -4.4751 6.1147 41 1 4.3345 -3.4543 4.0301 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324816320.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:48 Heat of formation + Delta-G solvation = -98.865058 kcal Electronic energy + Delta-G solvation = -22569.441158 eV Core-core repulsion = 19028.853513 eV Total energy + Delta-G solvation = -3540.587644 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.24034 -38.97636 -38.38751 -36.48143 -33.94266 -33.58742 -32.19299 -31.03484 -30.20887 -27.93958 -27.73179 -25.49117 -24.59561 -22.26605 -21.43431 -20.47710 -20.02722 -18.06329 -17.37594 -17.18206 -16.70638 -16.07326 -15.96160 -15.07664 -14.94425 -14.56590 -14.33612 -13.89252 -13.68291 -13.55621 -13.24684 -13.06053 -12.77753 -12.61942 -12.53057 -12.30451 -12.16351 -11.90507 -11.81271 -11.56420 -11.48867 -11.21244 -11.01110 -10.87550 -10.72848 -10.47252 -10.25414 -9.69537 -9.57186 -9.21662 -8.69917 -8.20295 -6.92929 -6.43985 -4.02264 2.10220 2.21344 2.86861 3.13105 3.14842 3.17240 3.31821 3.90429 3.97265 4.42678 4.45669 4.56410 4.63001 4.85208 4.98161 5.09562 5.13834 5.25687 5.33766 5.37012 5.40542 5.52542 5.56150 5.58994 5.69278 5.79759 5.81693 5.92990 5.98944 6.15482 6.23666 6.29569 6.81339 6.86065 6.99693 7.16961 7.22440 7.34852 7.41337 7.72853 7.79891 8.00327 8.39777 9.01131 9.71700 10.73916 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.044524 B = 0.002458 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.728844 B =11386.567940 C =11638.941779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.124 3.876 3 C -0.144 4.144 4 O -0.562 6.562 5 C -0.128 4.128 6 C -0.137 4.137 7 C 0.502 3.498 8 O -0.530 6.530 9 N -0.662 5.662 10 C 0.033 3.967 11 C -0.090 4.090 12 C -0.220 4.220 13 C 0.147 3.853 14 O -0.176 6.176 15 C -0.392 4.392 16 H 0.091 0.909 17 C 0.039 3.961 18 N -0.862 5.862 19 Si 0.941 3.059 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.270 1.270 23 C -0.180 4.180 24 C -0.067 4.067 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.376 0.624 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.402 0.598 37 H 0.110 0.890 38 H 0.131 0.869 39 H 0.270 0.730 40 H 0.120 0.880 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.097 9.939 -19.393 23.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.084 3.916 3 C -0.201 4.201 4 O -0.368 6.368 5 C -0.166 4.166 6 C -0.177 4.177 7 C 0.290 3.710 8 O -0.407 6.407 9 N -0.307 5.307 10 C -0.059 4.059 11 C -0.111 4.111 12 C -0.240 4.240 13 C 0.093 3.907 14 O -0.080 6.080 15 C -0.469 4.469 16 H 0.109 0.891 17 C -0.166 4.166 18 N -0.497 5.497 19 Si 0.766 3.234 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.195 1.195 23 C -0.200 4.200 24 C -0.087 4.087 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.224 0.776 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.236 0.764 37 H 0.128 0.872 38 H 0.149 0.851 39 H 0.080 0.920 40 H 0.138 0.862 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.453 9.814 -18.620 23.073 hybrid contribution 0.835 0.180 0.301 0.905 sum -8.618 9.994 -18.319 22.577 Atomic orbital electron populations 1.22473 0.95640 1.02627 1.02808 1.21257 0.92631 0.93066 0.84644 1.21843 1.02189 0.93581 1.02458 1.86532 1.77272 1.29008 1.44018 1.22024 0.94127 1.01990 0.98460 1.21673 0.97543 1.01915 0.96537 1.20818 0.82064 0.80621 0.87500 1.90697 1.55271 1.45058 1.49631 1.43278 1.07308 1.59545 1.20560 1.17290 1.00110 0.97865 0.90657 1.20493 0.96674 0.98767 0.95126 1.20972 1.04237 1.00486 0.98330 1.19418 0.92087 0.91364 0.87843 1.83987 1.47568 1.46605 1.29817 1.21264 1.10592 1.13346 1.01653 0.89140 1.25290 0.98922 0.96565 0.95776 1.70039 1.40183 1.22444 1.17047 0.85782 0.79938 0.79049 0.78651 1.19523 1.20286 1.19516 1.20156 0.98236 1.03773 0.97794 1.20736 0.98978 0.93452 0.95570 0.91414 0.91844 0.92201 0.91483 0.91996 0.91035 0.77639 0.90778 0.90152 0.88710 0.88458 0.76410 0.87195 0.85127 0.91962 0.86160 0.85372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.16 8.82 37.16 0.33 -0.83 16 2 C 0.12 0.92 1.09 -90.62 -0.10 0.82 16 3 C -0.14 -0.99 8.35 37.16 0.31 -0.68 16 4 O -0.56 -4.38 12.52 -35.23 -0.44 -4.82 16 5 C -0.13 -1.14 3.77 -26.73 -0.10 -1.24 16 6 C -0.14 -1.24 5.11 -27.89 -0.14 -1.38 16 7 C 0.50 6.85 7.67 -10.99 -0.08 6.77 16 8 O -0.53 -9.39 13.42 5.55 0.07 -9.32 16 9 N -0.66 -8.99 5.34 -9.83 -0.05 -9.04 16 10 C 0.03 0.59 6.30 -83.63 -0.53 0.07 16 11 C -0.09 -1.64 9.96 -39.41 -0.39 -2.03 16 12 C -0.22 -4.77 9.16 -39.42 -0.36 -5.13 16 13 C 0.15 3.61 6.65 -39.09 -0.26 3.35 16 14 O -0.18 -5.09 9.75 0.04 0.00 -5.09 16 15 C -0.39 -10.98 9.48 30.88 0.29 -10.69 16 16 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 17 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 18 N -0.86 -25.43 13.67 55.48 0.76 -24.67 16 19 Si 0.94 20.49 29.55 -169.99 -5.02 15.47 16 20 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 21 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 22 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 23 C -0.18 -4.02 9.98 -39.42 -0.39 -4.41 16 24 C -0.07 -1.35 8.69 -39.41 -0.34 -1.69 16 25 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.45 6.35 -51.93 -0.33 0.13 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.38 1.82 9.05 45.56 0.41 2.23 16 32 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 33 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 34 H 0.09 0.72 6.35 -51.92 -0.33 0.39 16 35 H 0.10 0.76 7.82 -51.93 -0.41 0.36 16 36 H 0.40 3.95 8.82 -40.82 -0.36 3.59 16 37 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 38 H 0.13 2.78 5.63 -52.49 -0.30 2.49 16 39 H 0.27 7.32 8.31 -40.82 -0.34 6.99 16 40 H 0.12 2.61 8.06 -52.48 -0.42 2.18 16 41 H 0.13 2.51 6.23 -52.49 -0.33 2.18 16 LS Contribution 342.88 15.07 5.17 5.17 Total: -1.00 -33.91 342.88 -6.23 -40.14 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -4.84 Total: 8.27 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: -1.87 Total: -16.10 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: 0.71 Total: -33.71 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.37 Total: -19.23 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.91 -6.23 -40.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324816320.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.727 kcal (2) G-P(sol) polarization free energy of solvation -33.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds