Wall clock time and date at job start Tue Mar 31 2020 07:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47303 * 2 1 4 4 O 1.42910 * 109.47125 * 240.00007 * 2 1 3 5 5 C 1.52998 * 109.47200 * 120.00353 * 2 1 3 6 6 C 1.53002 * 109.47269 * 184.99728 * 5 2 1 7 7 C 1.50693 * 109.47013 * 179.97438 * 6 5 2 8 8 O 1.21288 * 120.00547 * 0.02562 * 7 6 5 9 9 N 1.34783 * 120.00115 * 180.02562 * 7 6 5 10 10 C 1.39981 * 120.00350 * 175.49199 * 9 7 6 11 11 C 1.38922 * 120.00283 * 215.12488 * 10 9 7 12 12 C 1.38008 * 120.00014 * 180.02562 * 11 10 9 13 13 C 1.38910 * 119.99976 * 0.02562 * 12 11 10 14 14 O 1.35774 * 119.99471 * 179.97438 * 13 12 11 15 15 C 1.34808 * 117.00313 * 5.34797 * 14 13 12 16 16 H 1.08002 * 120.00230 * 354.95457 * 15 14 13 17 17 C 1.38633 * 120.00210 * 174.96513 * 15 14 13 18 18 N 1.31575 * 119.99815 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00323 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47187 * 59.99558 * 19 17 15 21 21 H 1.48503 * 109.47384 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46741 * 299.99567 * 19 17 15 23 23 C 1.38907 * 120.00174 * 0.25692 * 13 12 11 24 24 C 1.37999 * 120.00277 * 359.44446 * 23 13 12 25 25 H 1.08994 * 109.47303 * 300.00062 * 1 2 3 26 26 H 1.09010 * 109.47080 * 59.99773 * 1 2 3 27 27 H 1.08996 * 109.47537 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47097 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47443 * 299.99963 * 3 2 1 30 30 H 1.08996 * 109.46993 * 60.00290 * 3 2 1 31 31 H 0.96697 * 114.00152 * 300.00473 * 4 2 1 32 32 H 1.08994 * 109.47102 * 64.99911 * 5 2 1 33 33 H 1.08996 * 109.46779 * 304.99949 * 5 2 1 34 34 H 1.09008 * 109.46923 * 59.99986 * 6 5 2 35 35 H 1.08997 * 109.46957 * 300.00119 * 6 5 2 36 36 H 0.97001 * 119.99577 * 355.49141 * 9 7 6 37 37 H 1.07997 * 119.99847 * 359.97438 * 11 10 9 38 38 H 1.07994 * 119.99782 * 179.97438 * 12 11 10 39 39 H 0.97000 * 119.99968 * 180.02562 * 18 17 15 40 40 H 1.08008 * 119.99608 * 179.70477 * 23 13 12 41 41 H 1.07999 * 119.99955 * 180.28029 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 -1.1669 5 6 2.0400 -0.7213 1.2492 6 6 3.5648 -0.6134 1.3136 7 6 4.0671 -1.3233 2.5443 8 8 3.2827 -1.8630 3.2958 9 7 5.3879 -1.3587 2.8101 10 6 5.8473 -1.9353 4.0000 11 6 6.9553 -1.4031 4.6474 12 6 7.4084 -1.9719 5.8203 13 6 6.7571 -3.0771 6.3532 14 8 7.2033 -3.6370 7.5068 15 6 8.2119 -3.0077 8.1425 16 1 8.6821 -2.1472 7.6899 17 6 8.6459 -3.4653 9.3771 18 7 8.0729 -4.5135 9.9287 19 14 10.0439 -2.5938 10.2576 20 1 9.6644 -1.1808 10.5118 21 1 10.3150 -3.2732 11.5499 22 1 11.2635 -2.6343 9.4111 23 6 5.6528 -3.6129 5.7028 24 6 5.1958 -3.0404 4.5333 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.7210 -1.5952 -1.2330 32 1 1.7516 -1.7715 1.2055 33 1 1.6054 -0.2618 2.1369 34 1 3.8532 0.4369 1.3573 35 1 3.9994 -1.0729 0.4259 36 1 6.0202 -0.9845 2.1768 37 1 7.4624 -0.5446 4.2324 38 1 8.2700 -1.5584 6.3233 39 1 8.3763 -4.8334 10.7927 40 1 5.1493 -4.4751 6.1147 41 1 4.3345 -3.4543 4.0301 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324816320.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:48 Heat of formation + Delta-G solvation = -123.936880 kcal Electronic energy + Delta-G solvation = -22570.528353 eV Core-core repulsion = 19028.853513 eV Total energy + Delta-G solvation = -3541.674840 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.52534 -40.43958 -39.31011 -38.09791 -35.38029 -34.29982 -34.11133 -31.89086 -31.79511 -29.45398 -28.24233 -27.37563 -25.60829 -23.91375 -22.89548 -21.45459 -20.96528 -19.87798 -18.97378 -18.41640 -17.92507 -17.06029 -16.82873 -16.37045 -16.16492 -15.85558 -15.68536 -15.49664 -15.23259 -14.71432 -14.47157 -14.38159 -14.03452 -13.75063 -13.57781 -13.30139 -13.20247 -13.11023 -12.87182 -12.72520 -12.66785 -12.45457 -12.41259 -12.15151 -11.91960 -11.45857 -11.36268 -11.09691 -10.88391 -10.72693 -10.50518 -9.85551 -8.61775 -8.45392 -6.13187 0.50566 0.54505 1.36615 1.46672 1.53339 1.68914 2.16579 2.21029 2.82353 3.15210 3.38475 3.51641 3.65618 3.83420 4.01710 4.04897 4.11174 4.16023 4.32470 4.45118 4.48792 4.62311 4.68568 4.77218 4.80197 4.87547 4.97546 5.05311 5.06766 5.13645 5.18826 5.23811 5.30350 5.31785 5.43736 5.47133 5.56986 5.67918 6.02351 6.17130 6.57753 6.91130 6.98450 7.27999 7.79239 8.77655 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.044524 B = 0.002458 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.728844 B =11386.567940 C =11638.941779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.130 3.870 3 C -0.147 4.147 4 O -0.572 6.572 5 C -0.126 4.126 6 C -0.124 4.124 7 C 0.502 3.498 8 O -0.573 6.573 9 N -0.652 5.652 10 C 0.060 3.940 11 C -0.080 4.080 12 C -0.221 4.221 13 C 0.107 3.893 14 O -0.232 6.232 15 C -0.414 4.414 16 H 0.107 0.893 17 C -0.026 4.026 18 N -0.923 5.923 19 Si 1.021 2.979 20 H -0.257 1.257 21 H -0.274 1.274 22 H -0.254 1.254 23 C -0.192 4.192 24 C -0.074 4.074 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.388 0.612 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.426 0.574 37 H 0.159 0.841 38 H 0.133 0.867 39 H 0.272 0.728 40 H 0.110 0.890 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.415 12.896 -22.182 27.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.090 3.910 3 C -0.204 4.204 4 O -0.381 6.381 5 C -0.164 4.164 6 C -0.163 4.163 7 C 0.292 3.708 8 O -0.452 6.452 9 N -0.299 5.299 10 C -0.033 4.033 11 C -0.100 4.100 12 C -0.241 4.241 13 C 0.056 3.944 14 O -0.138 6.138 15 C -0.490 4.490 16 H 0.124 0.876 17 C -0.223 4.223 18 N -0.561 5.561 19 Si 0.840 3.160 20 H -0.181 1.181 21 H -0.199 1.199 22 H -0.178 1.178 23 C -0.212 4.212 24 C -0.094 4.094 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.237 0.763 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.264 0.736 37 H 0.177 0.823 38 H 0.150 0.850 39 H 0.081 0.919 40 H 0.129 0.871 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.782 12.806 -21.510 26.529 hybrid contribution 0.396 -0.672 0.824 1.134 sum -8.387 12.134 -20.686 25.407 Atomic orbital electron populations 1.22468 0.95211 1.02876 1.02989 1.21194 0.92960 0.93138 0.83737 1.21898 1.02507 0.93161 1.02871 1.86507 1.77481 1.30115 1.43954 1.22004 0.94103 1.01531 0.98791 1.21702 0.97390 1.02730 0.94488 1.21705 0.81391 0.79620 0.88132 1.90699 1.56328 1.46798 1.51328 1.43267 1.08160 1.59024 1.19436 1.17440 0.98609 0.95992 0.91298 1.20869 0.96300 0.99357 0.93454 1.21144 1.03983 0.99513 0.99451 1.19874 0.93570 0.93278 0.87672 1.83956 1.49168 1.48713 1.31989 1.21837 1.10861 1.13969 1.02318 0.87618 1.26652 1.01951 0.97323 0.96367 1.70202 1.42972 1.25029 1.17898 0.84616 0.76247 0.77975 0.77170 1.18111 1.19911 1.17842 1.20275 0.98153 1.03963 0.98798 1.20852 0.99342 0.94316 0.94940 0.91353 0.91532 0.91996 0.91000 0.91916 0.90425 0.76290 0.91783 0.91464 0.86241 0.86316 0.73560 0.82316 0.84984 0.91883 0.87145 0.84965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.97 8.82 71.98 0.63 -1.34 16 2 C 0.13 1.58 1.09 -10.80 -0.01 1.57 16 3 C -0.15 -1.58 8.35 71.98 0.60 -0.98 16 4 O -0.57 -7.24 12.52 -148.98 -1.86 -9.11 16 5 C -0.13 -1.94 3.77 30.59 0.12 -1.82 16 6 C -0.12 -1.76 5.11 29.85 0.15 -1.61 16 7 C 0.50 12.12 7.67 87.65 0.67 12.79 16 8 O -0.57 -19.42 13.42 -3.05 -0.04 -19.47 16 9 N -0.65 -15.06 5.34 -303.38 -1.62 -16.67 16 10 C 0.06 2.00 6.30 38.17 0.24 2.24 16 11 C -0.08 -2.64 9.96 22.38 0.22 -2.41 16 12 C -0.22 -9.43 9.16 22.38 0.20 -9.22 16 13 C 0.11 5.45 6.65 22.59 0.15 5.60 16 14 O -0.23 -14.16 9.75 -22.78 -0.22 -14.39 16 15 C -0.41 -24.07 9.48 67.91 0.64 -23.42 16 16 H 0.11 5.51 5.20 -2.91 -0.02 5.49 16 17 C -0.03 -1.47 5.49 84.83 0.47 -1.00 16 18 N -0.92 -57.30 13.67 21.61 0.30 -57.00 16 19 Si 1.02 42.61 29.55 68.60 2.03 44.63 16 20 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 21 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 22 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 23 C -0.19 -8.93 9.98 22.37 0.22 -8.70 16 24 C -0.07 -2.95 8.69 22.38 0.19 -2.76 16 25 H 0.07 0.74 8.14 -2.39 -0.02 0.73 16 26 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 27 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.07 0.69 6.35 -2.39 -0.02 0.67 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.39 2.76 9.05 -74.06 -0.67 2.09 16 32 H 0.06 1.11 8.10 -2.39 -0.02 1.09 16 33 H 0.07 1.23 8.10 -2.39 -0.02 1.21 16 34 H 0.12 1.21 6.35 -2.38 -0.02 1.19 16 35 H 0.12 1.30 7.82 -2.39 -0.02 1.28 16 36 H 0.43 6.06 8.82 -92.71 -0.82 5.24 16 37 H 0.16 3.73 8.06 -2.91 -0.02 3.71 16 38 H 0.13 5.53 5.63 -2.91 -0.02 5.51 16 39 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 40 H 0.11 5.17 8.06 -2.91 -0.02 5.15 16 41 H 0.13 5.14 6.23 -2.91 -0.02 5.13 16 Total: -1.00 -78.68 342.88 2.67 -76.01 By element: Atomic # 1 Polarization: 27.48 SS G_CDS: -0.42 Total: 27.07 kcal Atomic # 6 Polarization: -35.58 SS G_CDS: 4.51 Total: -31.07 kcal Atomic # 7 Polarization: -72.35 SS G_CDS: -1.32 Total: -73.68 kcal Atomic # 8 Polarization: -40.83 SS G_CDS: -2.13 Total: -42.96 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal Total: -78.68 2.67 -76.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324816320.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.929 kcal (2) G-P(sol) polarization free energy of solvation -78.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds