Wall clock time and date at job start Tue Mar 31 2020 07:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47331 * 2 1 4 4 C 1.53007 * 109.46823 * 60.00171 * 3 2 1 5 5 O 1.42899 * 109.47430 * 300.00506 * 3 2 1 6 6 C 1.50699 * 109.47291 * 179.97438 * 3 2 1 7 7 O 1.21273 * 119.99868 * 335.00112 * 6 3 2 8 8 N 1.34774 * 119.99663 * 155.00316 * 6 3 2 9 9 C 1.46506 * 119.99494 * 180.02562 * 8 6 3 10 10 C 1.50699 * 109.46983 * 179.97438 * 9 8 6 11 11 C 1.38328 * 119.96224 * 270.02054 * 10 9 8 12 12 C 1.38279 * 120.13490 * 179.97438 * 11 10 9 13 13 C 1.38120 * 120.07187 * 359.77180 * 12 11 10 14 14 C 1.38861 * 119.92847 * 0.50048 * 13 12 11 15 15 O 1.35751 * 120.06597 * 179.74703 * 14 13 12 16 16 C 1.34829 * 117.00376 * 354.17384 * 15 14 13 17 17 H 1.07998 * 119.99999 * 5.03596 * 16 15 14 18 18 C 1.38657 * 120.00083 * 185.03464 * 16 15 14 19 19 N 1.31555 * 119.99797 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99748 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47410 * 90.00109 * 20 18 16 22 22 H 1.48504 * 109.46801 * 209.99865 * 20 18 16 23 23 H 1.48497 * 109.47495 * 329.99577 * 20 18 16 24 24 C 1.38073 * 119.96952 * 89.99494 * 10 9 8 25 25 H 1.09004 * 109.46824 * 299.99763 * 1 2 3 26 26 H 1.09000 * 109.47507 * 59.99880 * 1 2 3 27 27 H 1.09003 * 109.47461 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46713 * 239.99780 * 2 1 3 29 29 H 1.08999 * 109.46706 * 120.00579 * 2 1 3 30 30 H 1.09003 * 109.46627 * 179.97438 * 4 3 2 31 31 H 1.09002 * 109.47152 * 299.99513 * 4 3 2 32 32 H 1.08993 * 109.47402 * 60.00125 * 4 3 2 33 33 H 0.96695 * 113.99490 * 299.99943 * 5 3 2 34 34 H 0.96994 * 120.00750 * 359.97438 * 8 6 3 35 35 H 1.08996 * 109.47397 * 59.99565 * 9 8 6 36 36 H 1.08997 * 109.47015 * 299.99408 * 9 8 6 37 37 H 1.08001 * 119.93314 * 359.97438 * 11 10 9 38 38 H 1.07999 * 119.96467 * 180.02562 * 12 11 10 39 39 H 1.08001 * 120.03711 * 180.27572 * 13 12 11 40 40 H 0.96998 * 119.99749 * 179.97438 * 19 18 16 41 41 H 1.08001 * 120.03594 * 0.04940 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.5301 2.1636 1.2493 5 8 1.5637 2.1162 -1.1667 6 6 3.5471 1.4424 0.0006 7 8 4.1532 0.4906 0.4449 8 7 4.2211 2.5002 -0.4925 9 6 5.6861 2.4999 -0.4923 10 6 6.1887 3.7873 -1.0932 11 6 6.4187 3.8708 -2.4546 12 6 6.8794 5.0505 -3.0098 13 6 7.1068 6.1509 -2.2066 14 6 6.8823 6.0685 -0.8388 15 8 7.1098 7.1468 -0.0460 16 6 7.6668 8.2279 -0.6281 17 1 7.8360 8.2400 -1.6947 18 6 8.0223 9.3244 0.1426 19 7 8.5662 10.3790 -0.4253 20 14 7.7303 9.3032 1.9875 21 1 8.9256 8.7478 2.6716 22 1 7.4850 10.6876 2.4657 23 1 6.5481 8.4577 2.2920 24 6 6.4187 4.8824 -0.2843 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.8938 3.1912 1.2495 31 1 0.4400 2.1637 1.2493 32 1 1.8934 1.6498 2.1393 33 1 1.8490 1.7126 -1.9978 34 1 3.7363 3.2613 -0.8481 35 1 6.0494 1.6581 -1.0818 36 1 6.0493 2.4102 0.5314 37 1 6.2381 3.0129 -3.0853 38 1 7.0576 5.1128 -4.0732 39 1 7.4624 7.0734 -2.6415 40 1 8.8146 11.1462 0.1138 41 1 6.2393 4.8165 0.7787 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333294138.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:36 Heat of formation + Delta-G solvation = -99.665798 kcal Electronic energy + Delta-G solvation = -23016.581863 eV Core-core repulsion = 19475.959496 eV Total energy + Delta-G solvation = -3540.622367 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.47947 -39.31351 -37.58479 -36.92128 -34.74574 -33.37385 -32.46414 -31.03865 -29.81065 -29.35530 -26.40651 -25.39563 -24.91198 -22.05096 -21.75234 -20.74959 -20.17401 -18.49198 -17.76523 -17.15093 -16.32211 -16.01933 -15.68876 -15.35664 -15.10156 -14.73744 -14.38755 -14.10832 -13.87565 -13.54327 -13.46450 -12.96020 -12.72700 -12.66734 -12.60653 -12.40565 -12.22396 -12.12296 -12.03880 -11.76411 -11.48762 -11.23340 -10.98060 -10.90782 -10.80369 -10.74416 -10.23099 -9.64393 -9.48696 -9.11855 -8.94925 -8.36046 -7.51184 -6.48403 -4.15831 1.76925 2.11905 2.42290 3.13117 3.19021 3.22008 3.35676 3.81851 4.17948 4.32285 4.41400 4.53745 4.62221 4.66162 5.00746 5.06053 5.07574 5.15048 5.30990 5.36951 5.46536 5.54449 5.58523 5.66488 5.68985 5.70944 5.78169 5.92898 5.97959 6.02031 6.11580 6.34770 6.38566 6.64086 6.96038 7.06901 7.09677 7.17472 7.44343 7.51055 7.70644 7.95192 8.08448 8.86434 9.47138 10.59014 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.021380 B = 0.003261 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.324463 B = 8585.476209 C = 9230.729156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.135 4.135 3 C 0.120 3.880 4 C -0.141 4.141 5 O -0.547 6.547 6 C 0.486 3.514 7 O -0.541 6.541 8 N -0.711 5.711 9 C 0.165 3.835 10 C -0.076 4.076 11 C -0.186 4.186 12 C -0.077 4.077 13 C -0.212 4.212 14 C 0.157 3.843 15 O -0.215 6.215 16 C -0.392 4.392 17 H 0.107 0.893 18 C 0.065 3.935 19 N -0.877 5.877 20 Si 0.906 3.094 21 H -0.273 1.273 22 H -0.281 1.281 23 H -0.260 1.260 24 C -0.171 4.171 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.381 0.619 34 H 0.409 0.591 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.109 0.891 38 H 0.113 0.887 39 H 0.134 0.866 40 H 0.280 0.720 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.032 -16.840 -1.071 21.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.173 4.173 3 C 0.076 3.924 4 C -0.198 4.198 5 O -0.353 6.353 6 C 0.270 3.730 7 O -0.419 6.419 8 N -0.363 5.363 9 C 0.043 3.957 10 C -0.076 4.076 11 C -0.206 4.206 12 C -0.095 4.095 13 C -0.231 4.231 14 C 0.105 3.895 15 O -0.120 6.120 16 C -0.467 4.467 17 H 0.124 0.876 18 C -0.139 4.139 19 N -0.515 5.515 20 Si 0.731 3.269 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.184 1.184 24 C -0.191 4.191 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.101 0.899 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.228 0.772 34 H 0.245 0.755 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.127 0.873 38 H 0.131 0.869 39 H 0.152 0.848 40 H 0.091 0.909 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -12.800 -16.847 -0.022 21.158 hybrid contribution 0.236 0.308 -0.033 0.389 sum -12.564 -16.539 -0.055 20.770 Atomic orbital electron populations 1.21771 0.94570 1.01663 1.02675 1.21980 0.96833 0.94500 1.04021 1.21461 0.88445 0.93984 0.88487 1.21804 1.02796 1.01049 0.94131 1.86591 1.76563 1.56633 1.15512 1.21447 0.90815 0.82578 0.78134 1.90702 1.70180 1.34714 1.46282 1.46180 1.07348 1.20602 1.62140 1.20188 0.79149 0.95258 1.01148 1.19246 1.01069 0.93642 0.93670 1.20534 1.07880 0.98246 0.93908 1.20803 0.97299 0.92606 0.98798 1.21371 1.07881 1.00346 0.93538 1.19051 0.93493 0.87176 0.89814 1.83574 1.70775 1.20588 1.37076 1.20763 1.39381 0.91080 0.95469 0.87579 1.24470 0.95162 0.94011 1.00273 1.69641 1.39482 1.05212 1.37141 0.86180 0.79935 0.77586 0.83206 1.19821 1.20705 1.18360 1.20072 1.08277 0.91182 0.99563 0.92241 0.91960 0.92581 0.91432 0.89852 0.91155 0.90250 0.90481 0.77154 0.75499 0.90849 0.90829 0.87334 0.86940 0.84799 0.90947 0.86428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.41 37.16 0.35 -0.70 16 2 C -0.14 -1.16 4.71 -26.73 -0.13 -1.29 16 3 C 0.12 1.15 1.00 -91.77 -0.09 1.06 16 4 C -0.14 -1.28 8.47 37.16 0.31 -0.96 16 5 O -0.55 -4.78 11.62 -35.23 -0.41 -5.19 16 6 C 0.49 6.02 6.69 -10.99 -0.07 5.95 16 7 O -0.54 -8.46 16.09 5.56 0.09 -8.37 16 8 N -0.71 -8.67 5.46 -61.47 -0.34 -9.01 16 9 C 0.17 2.25 5.80 -5.19 -0.03 2.22 16 10 C -0.08 -1.19 5.25 -104.65 -0.55 -1.74 16 11 C -0.19 -2.86 9.70 -39.53 -0.38 -3.24 16 12 C -0.08 -1.29 10.04 -39.61 -0.40 -1.69 16 13 C -0.21 -4.33 9.17 -39.39 -0.36 -4.69 16 14 C 0.16 3.46 6.65 -39.11 -0.26 3.20 16 15 O -0.22 -5.51 8.59 0.05 0.00 -5.51 16 16 C -0.39 -10.75 9.95 30.89 0.31 -10.45 16 17 H 0.11 2.97 5.44 -52.49 -0.29 2.68 16 18 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 19 N -0.88 -24.90 13.96 55.48 0.77 -24.13 16 20 Si 0.91 21.30 28.62 -169.99 -4.86 16.43 16 21 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.26 -6.12 7.11 56.52 0.40 -5.72 16 24 C -0.17 -3.20 9.65 -39.40 -0.38 -3.58 16 25 H 0.06 0.40 6.43 -51.93 -0.33 0.07 16 26 H 0.06 0.44 7.68 -51.93 -0.40 0.04 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.80 7.87 -51.93 -0.41 0.39 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.62 6.43 -51.93 -0.33 0.29 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.38 2.25 9.04 45.56 0.41 2.66 16 34 H 0.41 4.73 7.90 -40.82 -0.32 4.41 16 35 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 36 H 0.07 1.05 8.08 -51.93 -0.42 0.63 16 37 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 38 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 39 H 0.13 2.89 5.64 -52.49 -0.30 2.60 16 40 H 0.28 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.12 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 345.27 15.07 5.20 5.20 Total: -1.00 -30.46 345.27 -6.22 -36.68 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -4.90 Total: 8.13 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: -1.78 Total: -14.25 kcal Atomic # 7 Polarization: -33.57 SS G_CDS: 0.44 Total: -33.14 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -0.32 Total: -19.06 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.86 Total: 16.43 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.46 -6.22 -36.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333294138.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.985 kcal (2) G-P(sol) polarization free energy of solvation -30.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds