Wall clock time and date at job start Tue Mar 31 2020 07:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47331 * 2 1 4 4 C 1.53007 * 109.46823 * 60.00171 * 3 2 1 5 5 O 1.42899 * 109.47430 * 300.00506 * 3 2 1 6 6 C 1.50699 * 109.47291 * 179.97438 * 3 2 1 7 7 O 1.21273 * 119.99868 * 335.00112 * 6 3 2 8 8 N 1.34774 * 119.99663 * 155.00316 * 6 3 2 9 9 C 1.46506 * 119.99494 * 180.02562 * 8 6 3 10 10 C 1.50699 * 109.46983 * 179.97438 * 9 8 6 11 11 C 1.38328 * 119.96224 * 270.02054 * 10 9 8 12 12 C 1.38279 * 120.13490 * 179.97438 * 11 10 9 13 13 C 1.38120 * 120.07187 * 359.77180 * 12 11 10 14 14 C 1.38861 * 119.92847 * 0.50048 * 13 12 11 15 15 O 1.35751 * 120.06597 * 179.74703 * 14 13 12 16 16 C 1.34829 * 117.00376 * 354.17384 * 15 14 13 17 17 H 1.07998 * 119.99999 * 5.03596 * 16 15 14 18 18 C 1.38657 * 120.00083 * 185.03464 * 16 15 14 19 19 N 1.31555 * 119.99797 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99748 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47410 * 90.00109 * 20 18 16 22 22 H 1.48504 * 109.46801 * 209.99865 * 20 18 16 23 23 H 1.48497 * 109.47495 * 329.99577 * 20 18 16 24 24 C 1.38073 * 119.96952 * 89.99494 * 10 9 8 25 25 H 1.09004 * 109.46824 * 299.99763 * 1 2 3 26 26 H 1.09000 * 109.47507 * 59.99880 * 1 2 3 27 27 H 1.09003 * 109.47461 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46713 * 239.99780 * 2 1 3 29 29 H 1.08999 * 109.46706 * 120.00579 * 2 1 3 30 30 H 1.09003 * 109.46627 * 179.97438 * 4 3 2 31 31 H 1.09002 * 109.47152 * 299.99513 * 4 3 2 32 32 H 1.08993 * 109.47402 * 60.00125 * 4 3 2 33 33 H 0.96695 * 113.99490 * 299.99943 * 5 3 2 34 34 H 0.96994 * 120.00750 * 359.97438 * 8 6 3 35 35 H 1.08996 * 109.47397 * 59.99565 * 9 8 6 36 36 H 1.08997 * 109.47015 * 299.99408 * 9 8 6 37 37 H 1.08001 * 119.93314 * 359.97438 * 11 10 9 38 38 H 1.07999 * 119.96467 * 180.02562 * 12 11 10 39 39 H 1.08001 * 120.03711 * 180.27572 * 13 12 11 40 40 H 0.96998 * 119.99749 * 179.97438 * 19 18 16 41 41 H 1.08001 * 120.03594 * 0.04940 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.5301 2.1636 1.2493 5 8 1.5637 2.1162 -1.1667 6 6 3.5471 1.4424 0.0006 7 8 4.1532 0.4906 0.4449 8 7 4.2211 2.5002 -0.4925 9 6 5.6861 2.4999 -0.4923 10 6 6.1887 3.7873 -1.0932 11 6 6.4187 3.8708 -2.4546 12 6 6.8794 5.0505 -3.0098 13 6 7.1068 6.1509 -2.2066 14 6 6.8823 6.0685 -0.8388 15 8 7.1098 7.1468 -0.0460 16 6 7.6668 8.2279 -0.6281 17 1 7.8360 8.2400 -1.6947 18 6 8.0223 9.3244 0.1426 19 7 8.5662 10.3790 -0.4253 20 14 7.7303 9.3032 1.9875 21 1 8.9256 8.7478 2.6716 22 1 7.4850 10.6876 2.4657 23 1 6.5481 8.4577 2.2920 24 6 6.4187 4.8824 -0.2843 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.8938 3.1912 1.2495 31 1 0.4400 2.1637 1.2493 32 1 1.8934 1.6498 2.1393 33 1 1.8490 1.7126 -1.9978 34 1 3.7363 3.2613 -0.8481 35 1 6.0494 1.6581 -1.0818 36 1 6.0493 2.4102 0.5314 37 1 6.2381 3.0129 -3.0853 38 1 7.0576 5.1128 -4.0732 39 1 7.4624 7.0734 -2.6415 40 1 8.8146 11.1462 0.1138 41 1 6.2393 4.8165 0.7787 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333294138.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:36 Heat of formation + Delta-G solvation = -121.574311 kcal Electronic energy + Delta-G solvation = -23017.531888 eV Core-core repulsion = 19475.959496 eV Total energy + Delta-G solvation = -3541.572391 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.46402 -40.87533 -38.78316 -38.14750 -35.90538 -34.46927 -34.07005 -32.33466 -31.06689 -30.40794 -27.65970 -27.06390 -25.89558 -23.39432 -22.82896 -22.19598 -21.02566 -19.80532 -19.39409 -18.63099 -17.30334 -16.95990 -16.85830 -16.67372 -16.45591 -15.91902 -15.70875 -15.55906 -15.37827 -14.89847 -14.53503 -14.26690 -14.12637 -13.88253 -13.68502 -13.41860 -13.34221 -13.13646 -12.99588 -12.80815 -12.59964 -12.51455 -12.47727 -12.40132 -11.95808 -11.85936 -11.44942 -11.34174 -10.93690 -10.59598 -10.17765 -9.79274 -9.14206 -8.51548 -6.24408 0.32451 0.62788 1.30731 1.34056 1.44790 1.50416 2.13124 2.26337 2.76780 2.96691 3.12327 3.15371 3.57946 3.71325 3.80628 3.90780 4.03845 4.23980 4.37780 4.43484 4.47207 4.52114 4.61701 4.65858 4.67802 4.81556 4.89601 4.90543 5.02133 5.11312 5.16303 5.27072 5.31882 5.36145 5.45831 5.60324 5.66584 5.73220 5.87481 6.17220 6.35553 6.67754 6.82950 7.11046 7.56566 8.59935 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.021380 B = 0.003261 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.324463 B = 8585.476209 C = 9230.729156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.132 4.132 3 C 0.129 3.871 4 C -0.143 4.143 5 O -0.549 6.549 6 C 0.487 3.513 7 O -0.574 6.574 8 N -0.706 5.706 9 C 0.171 3.829 10 C -0.062 4.062 11 C -0.158 4.158 12 C -0.073 4.073 13 C -0.228 4.228 14 C 0.120 3.880 15 O -0.245 6.245 16 C -0.399 4.399 17 H 0.084 0.916 18 C 0.011 3.989 19 N -0.922 5.922 20 Si 0.968 3.032 21 H -0.267 1.267 22 H -0.267 1.267 23 H -0.263 1.263 24 C -0.171 4.171 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.394 0.606 34 H 0.414 0.586 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.151 0.849 38 H 0.145 0.855 39 H 0.110 0.890 40 H 0.285 0.715 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.706 -19.543 -1.429 24.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.170 4.170 3 C 0.085 3.915 4 C -0.200 4.200 5 O -0.357 6.357 6 C 0.273 3.727 7 O -0.453 6.453 8 N -0.358 5.358 9 C 0.048 3.952 10 C -0.063 4.063 11 C -0.177 4.177 12 C -0.091 4.091 13 C -0.248 4.248 14 C 0.071 3.929 15 O -0.153 6.153 16 C -0.475 4.475 17 H 0.101 0.899 18 C -0.187 4.187 19 N -0.563 5.563 20 Si 0.791 3.209 21 H -0.192 1.192 22 H -0.192 1.192 23 H -0.188 1.188 24 C -0.191 4.191 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.112 0.888 32 H 0.095 0.905 33 H 0.244 0.756 34 H 0.251 0.749 35 H 0.106 0.894 36 H 0.086 0.914 37 H 0.168 0.832 38 H 0.163 0.837 39 H 0.128 0.872 40 H 0.094 0.906 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -14.495 -19.581 -0.419 24.366 hybrid contribution 0.675 0.828 -0.129 1.076 sum -13.821 -18.753 -0.548 23.302 Atomic orbital electron populations 1.21748 0.93214 1.02385 1.02905 1.21958 0.97903 0.93582 1.03588 1.21372 0.86279 0.94782 0.89094 1.21850 1.03752 1.00458 0.93978 1.86585 1.76350 1.56824 1.15954 1.21968 0.91943 0.81753 0.77017 1.90692 1.71079 1.35909 1.47662 1.46099 1.06710 1.20870 1.62088 1.20097 0.80052 0.94117 1.00964 1.19471 0.99562 0.93437 0.93797 1.21036 1.04066 0.98613 0.93963 1.21153 0.96146 0.91685 1.00120 1.21414 1.08789 1.01011 0.93572 1.19568 0.95255 0.87529 0.90578 1.83519 1.72944 1.21118 1.37694 1.20708 1.39734 0.92274 0.94779 0.89873 1.25247 0.95229 0.93677 1.04566 1.69721 1.41710 1.06115 1.38733 0.85251 0.79608 0.78035 0.78044 1.19218 1.19206 1.18759 1.20272 1.07696 0.90831 1.00309 0.91936 0.91752 0.91682 0.91230 0.90992 0.91922 0.88803 0.90490 0.75617 0.74918 0.89354 0.91420 0.83156 0.83714 0.87166 0.90555 0.86079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.41 71.98 0.68 -0.99 16 2 C -0.13 -1.98 4.71 30.59 0.14 -1.84 16 3 C 0.13 2.17 1.00 -11.54 -0.01 2.16 16 4 C -0.14 -2.32 8.47 71.98 0.61 -1.71 16 5 O -0.55 -7.96 11.62 -148.98 -1.73 -9.69 16 6 C 0.49 10.93 6.69 87.66 0.59 11.52 16 7 O -0.57 -16.83 16.09 -3.01 -0.05 -16.88 16 8 N -0.71 -15.20 5.46 -466.80 -2.55 -17.74 16 9 C 0.17 4.10 5.80 85.63 0.50 4.60 16 10 C -0.06 -1.77 5.25 -19.88 -0.10 -1.87 16 11 C -0.16 -4.17 9.70 22.30 0.22 -3.95 16 12 C -0.07 -2.27 10.04 22.25 0.22 -2.04 16 13 C -0.23 -9.45 9.17 22.39 0.21 -9.24 16 14 C 0.12 5.37 6.65 22.58 0.15 5.52 16 15 O -0.25 -13.03 8.59 -22.74 -0.20 -13.23 16 16 C -0.40 -23.07 9.95 67.92 0.68 -22.39 16 17 H 0.08 5.01 5.44 -2.91 -0.02 4.99 16 18 C 0.01 0.65 5.49 84.83 0.47 1.12 16 19 N -0.92 -54.53 13.96 21.61 0.30 -54.23 16 20 Si 0.97 45.07 28.62 68.60 1.96 47.03 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 22 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 23 H -0.26 -12.23 7.11 99.48 0.71 -11.53 16 24 C -0.17 -6.26 9.65 22.39 0.22 -6.04 16 25 H 0.06 0.68 6.43 -2.39 -0.02 0.67 16 26 H 0.06 0.73 7.68 -2.39 -0.02 0.71 16 27 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.07 1.26 7.87 -2.39 -0.02 1.24 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.09 1.25 6.43 -2.39 -0.02 1.23 16 32 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.39 3.34 9.04 -74.06 -0.67 2.67 16 34 H 0.41 8.32 7.90 -92.71 -0.73 7.59 16 35 H 0.09 1.94 8.08 -2.39 -0.02 1.92 16 36 H 0.07 1.76 8.08 -2.39 -0.02 1.74 16 37 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 38 H 0.15 3.57 8.06 -2.91 -0.02 3.54 16 39 H 0.11 5.06 5.64 -2.91 -0.02 5.04 16 40 H 0.28 15.46 8.31 -92.71 -0.77 14.69 16 41 H 0.12 4.28 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -68.57 345.27 1.95 -66.61 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: -0.34 Total: 23.29 kcal Atomic # 6 Polarization: -29.72 SS G_CDS: 4.55 Total: -25.17 kcal Atomic # 7 Polarization: -69.73 SS G_CDS: -2.25 Total: -71.97 kcal Atomic # 8 Polarization: -37.82 SS G_CDS: -1.97 Total: -39.79 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.96 Total: 47.03 kcal Total: -68.57 1.95 -66.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333294138.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.962 kcal (2) G-P(sol) polarization free energy of solvation -68.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds