Wall clock time and date at job start Tue Mar 31 2020 07:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47335 * 2 1 4 4 C 1.53004 * 109.46730 * 305.00023 * 3 2 1 5 5 O 1.42902 * 109.47095 * 64.99551 * 3 2 1 6 6 C 1.50690 * 109.47492 * 184.99812 * 3 2 1 7 7 O 1.21288 * 119.99717 * 24.99712 * 6 3 2 8 8 N 1.34771 * 120.00280 * 204.99745 * 6 3 2 9 9 C 1.46506 * 120.00375 * 179.97438 * 8 6 3 10 10 C 1.50697 * 109.47142 * 180.02562 * 9 8 6 11 11 C 1.38323 * 119.96636 * 269.72190 * 10 9 8 12 12 C 1.38279 * 120.13927 * 179.77081 * 11 10 9 13 13 C 1.38125 * 120.06703 * 0.50804 * 12 11 10 14 14 C 1.38854 * 119.92981 * 359.74762 * 13 12 11 15 15 O 1.35754 * 120.06727 * 179.97438 * 14 13 12 16 16 C 1.34822 * 116.99872 * 354.48546 * 15 14 13 17 17 H 1.08003 * 120.00164 * 5.06212 * 16 15 14 18 18 C 1.38658 * 120.00006 * 185.05562 * 16 15 14 19 19 N 1.31555 * 119.99891 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00117 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.47224 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47129 * 120.00119 * 20 18 16 23 23 H 1.48499 * 109.47615 * 240.00398 * 20 18 16 24 24 C 1.38078 * 119.96445 * 90.00269 * 10 9 8 25 25 H 1.08999 * 109.47210 * 300.00086 * 1 2 3 26 26 H 1.09005 * 109.46974 * 60.00509 * 1 2 3 27 27 H 1.09004 * 109.46989 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47485 * 239.99441 * 2 1 3 29 29 H 1.09005 * 109.46974 * 119.99491 * 2 1 3 30 30 H 1.09001 * 109.47193 * 180.02562 * 4 3 2 31 31 H 1.08999 * 109.46727 * 299.99515 * 4 3 2 32 32 H 1.09002 * 109.47372 * 59.99746 * 4 3 2 33 33 H 0.96701 * 113.99997 * 60.00210 * 5 3 2 34 34 H 0.97000 * 120.00131 * 0.02562 * 8 6 3 35 35 H 1.09006 * 109.46576 * 300.00248 * 9 8 6 36 36 H 1.09003 * 109.46680 * 59.99745 * 9 8 6 37 37 H 1.08001 * 119.92627 * 0.02562 * 11 10 9 38 38 H 1.07993 * 119.96404 * 180.25848 * 12 11 10 39 39 H 1.07997 * 120.02875 * 179.77129 * 13 12 11 40 40 H 0.97001 * 120.00070 * 179.97438 * 19 18 16 41 41 H 1.08000 * 120.03846 * 359.95063 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4299 2.1991 -1.1817 5 8 1.6619 2.0814 1.2210 6 6 3.5418 1.4443 -0.1238 7 8 4.1086 0.5063 -0.6434 8 7 4.2552 2.4882 0.3429 9 6 5.7154 2.4897 0.2231 10 6 6.2669 3.7598 0.8178 11 6 6.4369 4.8784 0.0220 12 6 6.9382 6.0471 0.5651 13 6 7.2806 6.0977 1.9023 14 6 7.1160 4.9750 2.7025 15 8 7.4520 5.0215 4.0170 16 6 8.0458 6.1490 4.4574 17 1 8.1598 6.9937 3.7943 18 6 8.5099 6.2240 5.7619 19 7 8.3713 5.1949 6.5696 20 14 9.3318 7.7864 6.3724 21 1 9.3637 8.7893 5.2776 22 1 8.5654 8.3326 7.5212 23 1 10.7193 7.4798 6.8039 24 6 6.6073 3.8041 2.1552 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.7936 3.2266 -1.1820 31 1 1.7184 1.7117 -2.1130 32 1 0.3436 2.1978 -1.0922 33 1 2.0141 1.6543 2.0139 34 1 3.8020 3.2382 0.7589 35 1 6.1245 1.6316 0.7564 36 1 5.9936 2.4300 -0.8291 37 1 6.1738 4.8400 -1.0247 38 1 7.0659 6.9200 -0.0579 39 1 7.6755 7.0097 2.3249 40 1 8.6963 5.2473 7.4820 41 1 6.4778 2.9293 2.7753 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333294139.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:38 Heat of formation + Delta-G solvation = -101.228345 kcal Electronic energy + Delta-G solvation = -22962.734995 eV Core-core repulsion = 19422.044871 eV Total energy + Delta-G solvation = -3540.690124 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.40889 -39.14964 -37.48093 -36.76102 -34.66584 -33.35101 -32.35642 -30.94596 -29.67360 -29.10811 -26.37195 -25.45957 -24.87800 -21.93164 -21.67520 -20.82945 -20.10230 -18.48695 -17.59237 -17.02460 -16.27559 -15.93000 -15.63159 -15.21687 -14.93620 -14.56259 -14.44516 -14.28614 -13.69040 -13.62260 -13.30977 -12.94586 -12.71542 -12.65949 -12.44758 -12.34964 -12.15044 -12.07129 -11.69886 -11.69212 -11.40595 -11.16368 -10.96968 -10.85066 -10.72829 -10.69322 -10.47939 -9.57512 -9.42708 -9.04303 -8.91504 -8.26498 -7.35500 -6.51357 -4.10794 1.86791 2.24198 2.49003 3.07403 3.09979 3.15497 3.22861 3.88940 3.90783 4.40407 4.48047 4.60076 4.71261 4.90555 5.04508 5.09035 5.21039 5.23782 5.33949 5.48045 5.51525 5.57788 5.67847 5.69837 5.75896 5.81243 5.87117 5.96334 6.05001 6.06428 6.22057 6.42249 6.52569 6.78669 6.97108 7.15313 7.17520 7.25018 7.33100 7.55684 7.68742 7.92880 8.15346 8.94184 9.62498 10.66463 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.024377 B = 0.003013 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.338607 B = 9290.577507 C = 9812.588991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.137 4.137 3 C 0.120 3.880 4 C -0.139 4.139 5 O -0.549 6.549 6 C 0.485 3.515 7 O -0.542 6.542 8 N -0.710 5.710 9 C 0.165 3.835 10 C -0.073 4.073 11 C -0.195 4.195 12 C -0.076 4.076 13 C -0.225 4.225 14 C 0.151 3.849 15 O -0.176 6.176 16 C -0.393 4.393 17 H 0.093 0.907 18 C 0.040 3.960 19 N -0.861 5.861 20 Si 0.941 3.059 21 H -0.267 1.267 22 H -0.275 1.275 23 H -0.275 1.275 24 C -0.171 4.171 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.084 0.916 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.383 0.617 34 H 0.409 0.591 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.128 0.872 40 H 0.270 0.730 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.950 -4.626 -12.113 17.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.175 4.175 3 C 0.076 3.924 4 C -0.196 4.196 5 O -0.355 6.355 6 C 0.270 3.730 7 O -0.420 6.420 8 N -0.362 5.362 9 C 0.043 3.957 10 C -0.074 4.074 11 C -0.214 4.214 12 C -0.094 4.094 13 C -0.245 4.245 14 C 0.097 3.903 15 O -0.080 6.080 16 C -0.469 4.469 17 H 0.110 0.890 18 C -0.165 4.165 19 N -0.495 5.495 20 Si 0.766 3.234 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.201 1.201 24 C -0.191 4.191 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.102 0.898 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.232 0.768 34 H 0.245 0.755 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.146 0.854 40 H 0.080 0.920 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.800 -5.119 -12.454 17.904 hybrid contribution 0.694 0.881 0.932 1.458 sum -11.106 -4.238 -11.522 16.555 Atomic orbital electron populations 1.21791 0.94642 1.01706 1.02584 1.21999 0.96843 0.94549 1.04089 1.21448 0.89224 0.94355 0.87386 1.21801 1.02224 1.00580 0.95042 1.86568 1.76741 1.57007 1.15172 1.21447 0.90470 0.82387 0.78718 1.90701 1.72207 1.35087 1.43974 1.46175 1.07530 1.22056 1.60399 1.20194 0.79041 0.95810 1.00695 1.19246 1.00599 0.94289 0.93272 1.20472 1.08540 0.93599 0.98834 1.20746 0.97155 0.96953 0.94524 1.21249 1.09017 0.99742 0.94483 1.19314 0.92819 0.92941 0.85222 1.83979 1.66826 1.39448 1.17707 1.21375 1.37394 0.91116 0.97031 0.88975 1.25301 0.97030 0.99056 0.95088 1.70043 1.43252 1.29612 1.06621 0.85640 0.78808 0.79830 0.79105 1.19084 1.20095 1.20090 1.20069 1.07615 0.97102 0.94270 0.91965 0.92240 0.92580 0.89769 0.91339 0.91329 0.90563 0.90219 0.76842 0.75516 0.90848 0.90929 0.87541 0.87253 0.85422 0.91985 0.86441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.32 37.16 0.35 -0.80 16 2 C -0.14 -1.28 4.84 -26.73 -0.13 -1.41 16 3 C 0.12 1.22 1.01 -91.77 -0.09 1.13 16 4 C -0.14 -1.25 8.34 37.16 0.31 -0.94 16 5 O -0.55 -5.40 11.83 -35.23 -0.42 -5.81 16 6 C 0.49 6.36 6.69 -10.99 -0.07 6.29 16 7 O -0.54 -8.83 15.99 5.55 0.09 -8.74 16 8 N -0.71 -9.27 5.46 -61.47 -0.34 -9.60 16 9 C 0.17 2.41 5.80 -5.19 -0.03 2.38 16 10 C -0.07 -1.23 5.25 -104.65 -0.55 -1.78 16 11 C -0.19 -3.18 9.70 -39.53 -0.38 -3.56 16 12 C -0.08 -1.32 10.04 -39.61 -0.40 -1.71 16 13 C -0.23 -4.69 9.17 -39.40 -0.36 -5.05 16 14 C 0.15 3.50 6.65 -39.11 -0.26 3.24 16 15 O -0.18 -4.89 9.76 0.06 0.00 -4.89 16 16 C -0.39 -10.71 9.49 30.89 0.29 -10.42 16 17 H 0.09 2.32 5.20 -52.48 -0.27 2.05 16 18 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 19 N -0.86 -24.78 13.67 55.48 0.76 -24.02 16 20 Si 0.94 20.10 29.55 -169.99 -5.02 15.07 16 21 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 22 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 23 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 24 C -0.17 -3.42 9.65 -39.39 -0.38 -3.80 16 25 H 0.06 0.49 7.82 -51.93 -0.41 0.08 16 26 H 0.06 0.42 6.35 -51.93 -0.33 0.09 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.08 0.86 7.68 -51.93 -0.40 0.46 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.62 6.35 -51.93 -0.33 0.29 16 33 H 0.38 2.92 9.04 45.56 0.41 3.33 16 34 H 0.41 5.09 7.90 -40.82 -0.32 4.77 16 35 H 0.07 1.11 8.08 -51.93 -0.42 0.69 16 36 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16 37 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 38 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.13 2.67 5.64 -52.49 -0.30 2.37 16 40 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.12 2.32 8.06 -52.49 -0.42 1.89 16 LS Contribution 346.19 15.07 5.22 5.22 Total: -1.00 -31.35 346.19 -6.39 -37.74 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -4.88 Total: 10.49 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: -1.80 Total: -15.46 kcal Atomic # 7 Polarization: -34.05 SS G_CDS: 0.42 Total: -33.62 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.33 Total: -19.44 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.35 -6.39 -37.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333294139.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.487 kcal (2) G-P(sol) polarization free energy of solvation -31.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds