Wall clock time and date at job start Tue Mar 31 2020 07:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47335 * 2 1 4 4 C 1.53004 * 109.46730 * 305.00023 * 3 2 1 5 5 O 1.42902 * 109.47095 * 64.99551 * 3 2 1 6 6 C 1.50690 * 109.47492 * 184.99812 * 3 2 1 7 7 O 1.21288 * 119.99717 * 24.99712 * 6 3 2 8 8 N 1.34771 * 120.00280 * 204.99745 * 6 3 2 9 9 C 1.46506 * 120.00375 * 179.97438 * 8 6 3 10 10 C 1.50697 * 109.47142 * 180.02562 * 9 8 6 11 11 C 1.38323 * 119.96636 * 269.72190 * 10 9 8 12 12 C 1.38279 * 120.13927 * 179.77081 * 11 10 9 13 13 C 1.38125 * 120.06703 * 0.50804 * 12 11 10 14 14 C 1.38854 * 119.92981 * 359.74762 * 13 12 11 15 15 O 1.35754 * 120.06727 * 179.97438 * 14 13 12 16 16 C 1.34822 * 116.99872 * 354.48546 * 15 14 13 17 17 H 1.08003 * 120.00164 * 5.06212 * 16 15 14 18 18 C 1.38658 * 120.00006 * 185.05562 * 16 15 14 19 19 N 1.31555 * 119.99891 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00117 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.47224 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47129 * 120.00119 * 20 18 16 23 23 H 1.48499 * 109.47615 * 240.00398 * 20 18 16 24 24 C 1.38078 * 119.96445 * 90.00269 * 10 9 8 25 25 H 1.08999 * 109.47210 * 300.00086 * 1 2 3 26 26 H 1.09005 * 109.46974 * 60.00509 * 1 2 3 27 27 H 1.09004 * 109.46989 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47485 * 239.99441 * 2 1 3 29 29 H 1.09005 * 109.46974 * 119.99491 * 2 1 3 30 30 H 1.09001 * 109.47193 * 180.02562 * 4 3 2 31 31 H 1.08999 * 109.46727 * 299.99515 * 4 3 2 32 32 H 1.09002 * 109.47372 * 59.99746 * 4 3 2 33 33 H 0.96701 * 113.99997 * 60.00210 * 5 3 2 34 34 H 0.97000 * 120.00131 * 0.02562 * 8 6 3 35 35 H 1.09006 * 109.46576 * 300.00248 * 9 8 6 36 36 H 1.09003 * 109.46680 * 59.99745 * 9 8 6 37 37 H 1.08001 * 119.92627 * 0.02562 * 11 10 9 38 38 H 1.07993 * 119.96404 * 180.25848 * 12 11 10 39 39 H 1.07997 * 120.02875 * 179.77129 * 13 12 11 40 40 H 0.97001 * 120.00070 * 179.97438 * 19 18 16 41 41 H 1.08000 * 120.03846 * 359.95063 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4299 2.1991 -1.1817 5 8 1.6619 2.0814 1.2210 6 6 3.5418 1.4443 -0.1238 7 8 4.1086 0.5063 -0.6434 8 7 4.2552 2.4882 0.3429 9 6 5.7154 2.4897 0.2231 10 6 6.2669 3.7598 0.8178 11 6 6.4369 4.8784 0.0220 12 6 6.9382 6.0471 0.5651 13 6 7.2806 6.0977 1.9023 14 6 7.1160 4.9750 2.7025 15 8 7.4520 5.0215 4.0170 16 6 8.0458 6.1490 4.4574 17 1 8.1598 6.9937 3.7943 18 6 8.5099 6.2240 5.7619 19 7 8.3713 5.1949 6.5696 20 14 9.3318 7.7864 6.3724 21 1 9.3637 8.7893 5.2776 22 1 8.5654 8.3326 7.5212 23 1 10.7193 7.4798 6.8039 24 6 6.6073 3.8041 2.1552 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.7936 3.2266 -1.1820 31 1 1.7184 1.7117 -2.1130 32 1 0.3436 2.1978 -1.0922 33 1 2.0141 1.6543 2.0139 34 1 3.8020 3.2382 0.7589 35 1 6.1245 1.6316 0.7564 36 1 5.9936 2.4300 -0.8291 37 1 6.1738 4.8400 -1.0247 38 1 7.0659 6.9200 -0.0579 39 1 7.6755 7.0097 2.3249 40 1 8.6963 5.2473 7.4820 41 1 6.4778 2.9293 2.7753 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333294139.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:37 Heat of formation + Delta-G solvation = -124.147895 kcal Electronic energy + Delta-G solvation = -22963.728861 eV Core-core repulsion = 19422.044871 eV Total energy + Delta-G solvation = -3541.683990 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.45806 -40.76626 -38.69337 -38.12254 -35.90254 -34.30170 -34.12017 -32.31009 -30.86471 -30.32028 -27.72604 -27.08247 -25.92596 -23.31479 -22.88822 -22.28798 -21.02358 -19.80079 -19.17396 -18.61191 -17.31206 -16.93532 -16.75829 -16.63987 -16.30463 -16.11033 -15.62433 -15.58649 -15.40473 -14.91558 -14.41866 -14.21476 -13.96638 -13.75966 -13.59729 -13.39812 -13.29989 -13.07381 -12.98220 -12.78893 -12.57315 -12.50686 -12.38392 -12.29520 -12.09161 -11.85813 -11.46192 -11.22775 -10.83628 -10.59374 -10.19092 -9.75949 -9.04889 -8.47881 -6.16340 0.36173 0.68761 1.35722 1.43348 1.44104 1.53648 2.12866 2.16936 2.83293 3.12838 3.14634 3.37779 3.57562 3.75534 3.81852 3.91441 4.07205 4.28140 4.37508 4.41968 4.50535 4.52224 4.62135 4.67598 4.70907 4.82635 4.89807 4.99270 5.02011 5.10481 5.11037 5.23603 5.26719 5.31699 5.44099 5.60278 5.68535 5.69811 6.00828 6.14359 6.32701 6.62648 6.97103 7.09714 7.76881 8.75376 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.024377 B = 0.003013 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.338607 B = 9290.577507 C = 9812.588991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.135 4.135 3 C 0.126 3.874 4 C -0.140 4.140 5 O -0.552 6.552 6 C 0.486 3.514 7 O -0.574 6.574 8 N -0.705 5.705 9 C 0.171 3.829 10 C -0.060 4.060 11 C -0.170 4.170 12 C -0.069 4.069 13 C -0.235 4.235 14 C 0.113 3.887 15 O -0.232 6.232 16 C -0.412 4.412 17 H 0.103 0.897 18 C -0.023 4.023 19 N -0.920 5.920 20 Si 1.018 2.982 21 H -0.250 1.250 22 H -0.269 1.269 23 H -0.270 1.270 24 C -0.181 4.181 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.392 0.608 34 H 0.414 0.586 35 H 0.064 0.936 36 H 0.087 0.913 37 H 0.147 0.853 38 H 0.149 0.851 39 H 0.121 0.879 40 H 0.272 0.728 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.067 -3.425 -14.831 20.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.173 4.173 3 C 0.082 3.918 4 C -0.197 4.197 5 O -0.360 6.360 6 C 0.272 3.728 7 O -0.454 6.454 8 N -0.357 5.357 9 C 0.048 3.952 10 C -0.060 4.060 11 C -0.189 4.189 12 C -0.087 4.087 13 C -0.254 4.254 14 C 0.063 3.937 15 O -0.138 6.138 16 C -0.488 4.488 17 H 0.121 0.879 18 C -0.220 4.220 19 N -0.558 5.558 20 Si 0.837 3.163 21 H -0.173 1.173 22 H -0.194 1.194 23 H -0.195 1.195 24 C -0.201 4.201 25 H 0.079 0.921 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.112 0.888 33 H 0.241 0.759 34 H 0.250 0.750 35 H 0.082 0.918 36 H 0.105 0.895 37 H 0.165 0.835 38 H 0.167 0.833 39 H 0.139 0.861 40 H 0.081 0.919 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -12.947 -3.911 -15.223 20.363 hybrid contribution 0.919 0.389 1.459 1.768 sum -12.028 -3.523 -13.764 18.615 Atomic orbital electron populations 1.21765 0.93058 1.02449 1.02955 1.21990 0.98131 0.93779 1.03436 1.21446 0.86984 0.95212 0.88113 1.21853 1.03068 1.00272 0.94476 1.86562 1.76630 1.57288 1.15486 1.22017 0.91677 0.81476 0.77619 1.90689 1.73097 1.36175 1.45462 1.46095 1.06813 1.22411 1.60377 1.20087 0.79973 0.94125 1.01050 1.19439 0.99200 0.95628 0.91769 1.20995 1.05091 0.92303 1.00476 1.21162 0.95548 0.98812 0.93180 1.21384 1.09353 0.98716 0.95974 1.19844 0.94300 0.94939 0.84614 1.83945 1.69429 1.40248 1.20215 1.21860 1.37608 0.91616 0.97742 0.87927 1.26576 0.97602 1.02841 0.95005 1.70187 1.45982 1.32466 1.07212 0.84534 0.77527 0.75403 0.78787 1.17330 1.19396 1.19521 1.20211 1.07998 0.96096 0.95757 0.92073 0.91313 0.91736 0.90703 0.91801 0.91382 0.90132 0.88763 0.75854 0.74969 0.91759 0.89477 0.83490 0.83324 0.86138 0.91863 0.87378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.32 71.98 0.67 -1.24 16 2 C -0.14 -2.34 4.84 30.59 0.15 -2.19 16 3 C 0.13 2.35 1.01 -11.54 -0.01 2.34 16 4 C -0.14 -2.14 8.34 71.98 0.60 -1.54 16 5 O -0.55 -9.89 11.83 -148.98 -1.76 -11.65 16 6 C 0.49 11.99 6.69 87.65 0.59 12.57 16 7 O -0.57 -18.07 15.99 -3.06 -0.05 -18.12 16 8 N -0.71 -17.07 5.46 -466.78 -2.55 -19.62 16 9 C 0.17 4.63 5.80 85.63 0.50 5.13 16 10 C -0.06 -1.89 5.25 -19.88 -0.10 -1.99 16 11 C -0.17 -4.83 9.70 22.30 0.22 -4.61 16 12 C -0.07 -2.17 10.04 22.25 0.22 -1.94 16 13 C -0.23 -9.66 9.17 22.39 0.21 -9.45 16 14 C 0.11 5.42 6.65 22.58 0.15 5.57 16 15 O -0.23 -13.62 9.76 -22.71 -0.22 -13.85 16 16 C -0.41 -23.48 9.49 67.92 0.64 -22.83 16 17 H 0.10 5.33 5.20 -2.91 -0.02 5.32 16 18 C -0.02 -1.27 5.49 84.83 0.47 -0.80 16 19 N -0.92 -55.87 13.67 21.61 0.30 -55.57 16 20 Si 1.02 42.12 29.55 68.60 2.03 44.14 16 21 H -0.25 -9.48 7.11 99.48 0.71 -8.78 16 22 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 23 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 24 C -0.18 -7.36 9.65 22.39 0.22 -7.14 16 25 H 0.06 0.83 7.82 -2.39 -0.02 0.81 16 26 H 0.07 0.78 6.35 -2.38 -0.02 0.76 16 27 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 28 H 0.07 1.45 7.68 -2.39 -0.02 1.43 16 29 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 30 H 0.07 1.05 8.14 -2.39 -0.02 1.04 16 31 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.09 1.18 6.35 -2.39 -0.02 1.17 16 33 H 0.39 5.50 9.04 -74.06 -0.67 4.83 16 34 H 0.41 9.43 7.90 -92.71 -0.73 8.70 16 35 H 0.06 1.90 8.08 -2.38 -0.02 1.88 16 36 H 0.09 2.18 8.08 -2.39 -0.02 2.16 16 37 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 38 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 39 H 0.12 5.06 5.64 -2.91 -0.02 5.04 16 40 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 41 H 0.11 4.50 8.06 -2.91 -0.02 4.47 16 Total: -1.00 -71.93 346.19 1.91 -70.02 By element: Atomic # 1 Polarization: 33.11 SS G_CDS: -0.34 Total: 32.77 kcal Atomic # 6 Polarization: -32.64 SS G_CDS: 4.51 Total: -28.13 kcal Atomic # 7 Polarization: -72.94 SS G_CDS: -2.25 Total: -75.19 kcal Atomic # 8 Polarization: -41.58 SS G_CDS: -2.03 Total: -43.62 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.14 kcal Total: -71.93 1.91 -70.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333294139.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.128 kcal (2) G-P(sol) polarization free energy of solvation -71.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds