Wall clock time and date at job start Tue Mar 31 2020 07:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47541 * 2 1 4 4 C 1.53003 * 109.47355 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.46714 * 55.00237 * 4 3 2 6 6 O 1.42897 * 109.47288 * 295.00172 * 4 3 2 7 7 C 1.50701 * 109.47091 * 174.99730 * 4 3 2 8 8 O 1.21285 * 119.99782 * 114.99933 * 7 4 3 9 9 N 1.34778 * 120.00224 * 295.00690 * 7 4 3 10 10 C 1.46497 * 119.99868 * 179.97438 * 9 7 4 11 11 C 1.50702 * 109.47259 * 179.97438 * 10 9 7 12 12 C 1.38324 * 119.96463 * 269.72596 * 11 10 9 13 13 C 1.38278 * 120.13585 * 179.76115 * 12 11 10 14 14 C 1.38121 * 120.07085 * 0.51761 * 13 12 11 15 15 C 1.38857 * 119.92893 * 359.73629 * 14 13 12 16 16 O 1.35751 * 120.06939 * 179.97438 * 15 14 13 17 17 C 1.34831 * 116.99838 * 354.48329 * 16 15 14 18 18 H 1.07997 * 120.00069 * 5.06814 * 17 16 15 19 19 C 1.38657 * 119.99892 * 185.06150 * 17 16 15 20 20 N 1.31560 * 119.99780 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 119.99888 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47054 * 90.00264 * 21 19 17 23 23 H 1.48504 * 109.46867 * 209.99708 * 21 19 17 24 24 H 1.48498 * 109.47180 * 329.99621 * 21 19 17 25 25 C 1.38077 * 119.96608 * 89.99964 * 11 10 9 26 26 H 1.08995 * 109.46928 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.46877 * 300.00239 * 1 2 3 28 28 H 1.08995 * 109.46584 * 60.00082 * 1 2 3 29 29 H 1.09008 * 109.46891 * 120.00476 * 2 1 3 30 30 H 1.09004 * 109.47220 * 239.99473 * 2 1 3 31 31 H 1.08998 * 109.47325 * 300.00323 * 3 2 1 32 32 H 1.09008 * 109.46940 * 59.99832 * 3 2 1 33 33 H 0.96700 * 114.00097 * 299.99972 * 6 4 3 34 34 H 0.96988 * 119.99861 * 359.97438 * 9 7 4 35 35 H 1.08998 * 109.47259 * 299.99809 * 10 9 7 36 36 H 1.09000 * 109.47281 * 59.99628 * 10 9 7 37 37 H 1.08002 * 119.92791 * 359.97438 * 12 11 10 38 38 H 1.08003 * 119.96299 * 180.25414 * 13 12 11 39 39 H 1.08002 * 120.03758 * 179.72371 * 14 13 12 40 40 H 0.97001 * 119.99517 * 180.02562 * 20 19 17 41 41 H 1.08000 * 120.03153 * 359.95444 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 0.0006 5 1 3.9337 0.8528 -0.8409 6 8 4.0460 0.8731 1.2219 7 6 4.0726 2.8577 -0.1233 8 8 4.6928 3.3630 0.7883 9 7 3.8325 3.5621 -1.2470 10 6 4.3205 4.9382 -1.3671 11 6 3.9229 5.4968 -2.7091 12 6 4.7678 5.3534 -3.7949 13 6 4.4044 5.8603 -5.0290 14 6 3.2007 6.5210 -5.1787 15 6 2.3528 6.6712 -4.0894 16 8 1.1694 7.3206 -4.2331 17 6 0.9276 7.8950 -5.4287 18 1 1.6220 7.7571 -6.2443 19 6 -0.2126 8.6625 -5.6112 20 7 -0.4488 9.2225 -6.7780 21 14 -1.4134 8.9013 -4.2004 22 1 -1.0286 10.1055 -3.4213 23 1 -2.7845 9.0797 -4.7423 24 1 -1.3819 7.7086 -3.3163 25 6 2.7183 6.1563 -2.8522 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.6768 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.7603 1.3476 2.0146 34 1 3.3367 3.1580 -1.9760 35 1 3.8852 5.5485 -0.5758 36 1 5.4067 4.9477 -1.2773 37 1 5.7117 4.8414 -3.6793 38 1 5.0644 5.7431 -5.8759 39 1 2.9194 6.9206 -6.1418 40 1 -1.2463 9.7597 -6.9056 41 1 2.0608 6.2711 -2.0032 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336313480.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:16 Heat of formation + Delta-G solvation = -108.323964 kcal Electronic energy + Delta-G solvation = -22715.080661 eV Core-core repulsion = 19174.082848 eV Total energy + Delta-G solvation = -3540.997813 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.26478 -39.31362 -37.42967 -36.81348 -34.91512 -34.23718 -32.48983 -31.25030 -29.74230 -29.21279 -26.26932 -25.27721 -24.28336 -21.90585 -21.62551 -20.80150 -20.69987 -18.31168 -17.76681 -17.10387 -16.83040 -16.16754 -15.52289 -15.42085 -15.25048 -14.77791 -14.35392 -14.20036 -13.94468 -13.89979 -13.65658 -13.46669 -12.78492 -12.65508 -12.40969 -12.28256 -12.20924 -12.13405 -11.88359 -11.54354 -11.44899 -11.00625 -10.98135 -10.96345 -10.88474 -10.81921 -10.25667 -9.68488 -9.51238 -9.16243 -8.97388 -8.39043 -7.53987 -6.50790 -4.18407 1.73999 2.09116 2.42173 3.12753 3.17702 3.20081 3.32833 3.98519 4.15380 4.30935 4.43813 4.53138 4.60019 4.61756 4.83876 4.97582 4.99192 5.07148 5.19125 5.34504 5.40413 5.49806 5.53644 5.57127 5.69043 5.76503 5.78785 5.88662 5.95292 6.02092 6.08841 6.29845 6.35880 6.61380 6.93512 7.04823 7.14714 7.17786 7.40059 7.46398 7.68108 7.92692 8.04400 8.83940 9.44372 10.56596 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.014935 B = 0.003508 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.373973 B = 7979.524790 C = 9119.847730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C -0.150 4.150 4 C 0.094 3.906 5 H 0.124 0.876 6 O -0.538 6.538 7 C 0.482 3.518 8 O -0.540 6.540 9 N -0.716 5.716 10 C 0.166 3.834 11 C -0.076 4.076 12 C -0.186 4.186 13 C -0.077 4.077 14 C -0.212 4.212 15 C 0.156 3.844 16 O -0.215 6.215 17 C -0.392 4.392 18 H 0.107 0.893 19 C 0.065 3.935 20 N -0.877 5.877 21 Si 0.905 3.095 22 H -0.273 1.273 23 H -0.281 1.281 24 H -0.260 1.260 25 C -0.172 4.172 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.383 0.617 34 H 0.404 0.596 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.109 0.891 38 H 0.113 0.887 39 H 0.134 0.866 40 H 0.281 0.719 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.678 -15.059 10.419 18.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C -0.188 4.188 4 C 0.031 3.969 5 H 0.141 0.859 6 O -0.343 6.343 7 C 0.267 3.733 8 O -0.417 6.417 9 N -0.369 5.369 10 C 0.044 3.956 11 C -0.077 4.077 12 C -0.206 4.206 13 C -0.095 4.095 14 C -0.231 4.231 15 C 0.104 3.896 16 O -0.120 6.120 17 C -0.468 4.468 18 H 0.124 0.876 19 C -0.139 4.139 20 N -0.514 5.514 21 Si 0.731 3.269 22 H -0.198 1.198 23 H -0.207 1.207 24 H -0.184 1.184 25 C -0.192 4.192 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.231 0.769 34 H 0.239 0.761 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.127 0.873 38 H 0.131 0.869 39 H 0.152 0.848 40 H 0.091 0.909 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.050 -14.931 10.706 19.054 hybrid contribution -1.028 0.632 0.132 1.214 sum 4.021 -14.299 10.838 18.387 Atomic orbital electron populations 1.21791 0.95584 1.01775 1.02081 1.21458 0.95888 0.95505 1.02797 1.22314 0.93583 0.98883 1.03986 1.21893 0.94129 0.90902 0.89996 0.85864 1.86567 1.77427 1.55129 1.15185 1.21649 0.80097 0.89021 0.82520 1.90715 1.40557 1.71135 1.39289 1.46192 1.57308 1.14866 1.18559 1.20173 0.99361 0.81424 0.94689 1.19253 0.94663 0.99723 0.94039 1.20557 1.00298 1.06760 0.92974 1.20812 0.95678 0.96368 0.96643 1.21375 0.96052 1.05601 1.00092 1.19053 0.85634 0.91862 0.93036 1.83574 1.30448 1.61290 1.36700 1.20765 1.09780 1.29419 0.86799 0.87569 1.24471 0.97220 0.94753 0.97447 1.69644 1.27795 1.31493 1.22485 0.86183 0.79336 0.79755 0.81645 1.19799 1.20690 1.18396 1.20070 0.97757 1.05543 0.95782 0.92608 0.92739 0.92479 0.91186 0.91711 0.90112 0.90878 0.76863 0.76120 0.90814 0.90784 0.87268 0.86925 0.84796 0.90927 0.86421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.16 0.37 -0.71 16 2 C -0.12 -0.84 5.83 -26.73 -0.16 -0.99 16 3 C -0.15 -1.14 4.86 -26.73 -0.13 -1.27 16 4 C 0.09 0.85 3.38 -27.88 -0.09 0.75 16 5 H 0.12 0.95 8.14 -51.93 -0.42 0.52 16 6 O -0.54 -5.46 12.53 -55.09 -0.69 -6.15 16 7 C 0.48 5.79 7.17 -10.98 -0.08 5.71 16 8 O -0.54 -8.55 16.32 -14.31 -0.23 -8.78 16 9 N -0.72 -8.15 5.45 -61.47 -0.33 -8.48 16 10 C 0.17 2.20 5.80 -5.19 -0.03 2.17 16 11 C -0.08 -1.16 5.25 -104.65 -0.55 -1.71 16 12 C -0.19 -2.81 9.70 -39.54 -0.38 -3.19 16 13 C -0.08 -1.27 10.04 -39.61 -0.40 -1.67 16 14 C -0.21 -4.25 9.17 -39.40 -0.36 -4.61 16 15 C 0.16 3.37 6.65 -39.11 -0.26 3.11 16 16 O -0.22 -5.41 8.59 0.04 0.00 -5.41 16 17 C -0.39 -10.64 9.95 30.89 0.31 -10.33 16 18 H 0.11 2.93 5.44 -52.49 -0.29 2.65 16 19 C 0.06 1.76 5.49 -17.51 -0.10 1.67 16 20 N -0.88 -24.64 13.96 55.48 0.77 -23.87 16 21 Si 0.91 21.01 28.62 -169.99 -4.86 16.15 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.26 -6.02 7.11 56.52 0.40 -5.62 16 25 C -0.17 -3.11 9.65 -39.40 -0.38 -3.49 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.51 7.82 -51.92 -0.41 0.11 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.60 7.77 -51.93 -0.40 0.20 16 32 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 33 H 0.38 3.11 8.79 45.56 0.40 3.51 16 34 H 0.40 3.93 8.17 -40.82 -0.33 3.59 16 35 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 36 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 37 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 38 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 39 H 0.13 2.85 5.64 -52.49 -0.30 2.55 16 40 H 0.28 7.28 8.31 -40.82 -0.34 6.94 16 41 H 0.12 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 350.75 15.07 5.29 5.29 Total: -1.00 -30.78 350.75 -7.41 -38.18 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -5.10 Total: 7.64 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: -2.24 Total: -14.56 kcal Atomic # 7 Polarization: -32.79 SS G_CDS: 0.44 Total: -32.35 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.92 Total: -20.34 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.86 Total: 16.15 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.78 -7.41 -38.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336313480.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.141 kcal (2) G-P(sol) polarization free energy of solvation -30.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds