Wall clock time and date at job start Tue Mar 31 2020 07:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47541 * 2 1 4 4 C 1.53003 * 109.47355 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.46714 * 55.00237 * 4 3 2 6 6 O 1.42897 * 109.47288 * 295.00172 * 4 3 2 7 7 C 1.50701 * 109.47091 * 174.99730 * 4 3 2 8 8 O 1.21285 * 119.99782 * 114.99933 * 7 4 3 9 9 N 1.34778 * 120.00224 * 295.00690 * 7 4 3 10 10 C 1.46497 * 119.99868 * 179.97438 * 9 7 4 11 11 C 1.50702 * 109.47259 * 179.97438 * 10 9 7 12 12 C 1.38324 * 119.96463 * 269.72596 * 11 10 9 13 13 C 1.38278 * 120.13585 * 179.76115 * 12 11 10 14 14 C 1.38121 * 120.07085 * 0.51761 * 13 12 11 15 15 C 1.38857 * 119.92893 * 359.73629 * 14 13 12 16 16 O 1.35751 * 120.06939 * 179.97438 * 15 14 13 17 17 C 1.34831 * 116.99838 * 354.48329 * 16 15 14 18 18 H 1.07997 * 120.00069 * 5.06814 * 17 16 15 19 19 C 1.38657 * 119.99892 * 185.06150 * 17 16 15 20 20 N 1.31560 * 119.99780 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 119.99888 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47054 * 90.00264 * 21 19 17 23 23 H 1.48504 * 109.46867 * 209.99708 * 21 19 17 24 24 H 1.48498 * 109.47180 * 329.99621 * 21 19 17 25 25 C 1.38077 * 119.96608 * 89.99964 * 11 10 9 26 26 H 1.08995 * 109.46928 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.46877 * 300.00239 * 1 2 3 28 28 H 1.08995 * 109.46584 * 60.00082 * 1 2 3 29 29 H 1.09008 * 109.46891 * 120.00476 * 2 1 3 30 30 H 1.09004 * 109.47220 * 239.99473 * 2 1 3 31 31 H 1.08998 * 109.47325 * 300.00323 * 3 2 1 32 32 H 1.09008 * 109.46940 * 59.99832 * 3 2 1 33 33 H 0.96700 * 114.00097 * 299.99972 * 6 4 3 34 34 H 0.96988 * 119.99861 * 359.97438 * 9 7 4 35 35 H 1.08998 * 109.47259 * 299.99809 * 10 9 7 36 36 H 1.09000 * 109.47281 * 59.99628 * 10 9 7 37 37 H 1.08002 * 119.92791 * 359.97438 * 12 11 10 38 38 H 1.08003 * 119.96299 * 180.25414 * 13 12 11 39 39 H 1.08002 * 120.03758 * 179.72371 * 14 13 12 40 40 H 0.97001 * 119.99517 * 180.02562 * 20 19 17 41 41 H 1.08000 * 120.03153 * 359.95444 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 0.0006 5 1 3.9337 0.8528 -0.8409 6 8 4.0460 0.8731 1.2219 7 6 4.0726 2.8577 -0.1233 8 8 4.6928 3.3630 0.7883 9 7 3.8325 3.5621 -1.2470 10 6 4.3205 4.9382 -1.3671 11 6 3.9229 5.4968 -2.7091 12 6 4.7678 5.3534 -3.7949 13 6 4.4044 5.8603 -5.0290 14 6 3.2007 6.5210 -5.1787 15 6 2.3528 6.6712 -4.0894 16 8 1.1694 7.3206 -4.2331 17 6 0.9276 7.8950 -5.4287 18 1 1.6220 7.7571 -6.2443 19 6 -0.2126 8.6625 -5.6112 20 7 -0.4488 9.2225 -6.7780 21 14 -1.4134 8.9013 -4.2004 22 1 -1.0286 10.1055 -3.4213 23 1 -2.7845 9.0797 -4.7423 24 1 -1.3819 7.7086 -3.3163 25 6 2.7183 6.1563 -2.8522 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.6768 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.7603 1.3476 2.0146 34 1 3.3367 3.1580 -1.9760 35 1 3.8852 5.5485 -0.5758 36 1 5.4067 4.9477 -1.2773 37 1 5.7117 4.8414 -3.6793 38 1 5.0644 5.7431 -5.8759 39 1 2.9194 6.9206 -6.1418 40 1 -1.2463 9.7597 -6.9056 41 1 2.0608 6.2711 -2.0032 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336313480.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:16 Heat of formation + Delta-G solvation = -129.162034 kcal Electronic energy + Delta-G solvation = -22715.984268 eV Core-core repulsion = 19174.082848 eV Total energy + Delta-G solvation = -3541.901420 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.29745 -40.80351 -38.73016 -37.87002 -35.95135 -34.98086 -34.46072 -32.47511 -31.09921 -30.20132 -27.54048 -26.95314 -25.16407 -23.33971 -22.32282 -22.21219 -21.62397 -19.77314 -19.29404 -18.48762 -17.70783 -17.00934 -16.85717 -16.71748 -16.34114 -15.99650 -15.74126 -15.62245 -15.29217 -14.89848 -14.75472 -14.45492 -14.26614 -14.17574 -13.86038 -13.45282 -13.12285 -13.11493 -12.84738 -12.62567 -12.59234 -12.48112 -12.39314 -12.07468 -11.95155 -11.65507 -11.53216 -11.33372 -10.93289 -10.60829 -10.17795 -9.78722 -9.13689 -8.51056 -6.24031 0.33163 0.63301 1.31397 1.34702 1.48874 1.50748 2.16086 2.26632 2.77642 2.96819 3.14183 3.29069 3.66002 3.75456 3.86493 3.98547 4.04673 4.23239 4.25791 4.37891 4.41075 4.48136 4.62533 4.63684 4.70054 4.80631 4.90888 4.92639 4.98294 5.17365 5.25148 5.29889 5.34122 5.36662 5.47997 5.61216 5.67570 5.73867 5.87874 6.17721 6.38293 6.63682 6.83463 7.12203 7.56961 8.60400 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.014935 B = 0.003508 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.373973 B = 7979.524790 C = 9119.847730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.115 4.115 3 C -0.144 4.144 4 C 0.102 3.898 5 H 0.143 0.857 6 O -0.550 6.550 7 C 0.483 3.517 8 O -0.579 6.579 9 N -0.709 5.709 10 C 0.172 3.828 11 C -0.061 4.061 12 C -0.159 4.159 13 C -0.073 4.073 14 C -0.228 4.228 15 C 0.120 3.880 16 O -0.244 6.244 17 C -0.399 4.399 18 H 0.083 0.917 19 C 0.012 3.988 20 N -0.922 5.922 21 Si 0.968 3.032 22 H -0.268 1.268 23 H -0.268 1.268 24 H -0.262 1.262 25 C -0.169 4.169 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.389 0.611 34 H 0.414 0.586 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.149 0.851 38 H 0.144 0.856 39 H 0.110 0.890 40 H 0.285 0.715 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.978 -17.087 11.956 21.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.153 4.153 3 C -0.182 4.182 4 C 0.040 3.960 5 H 0.160 0.840 6 O -0.356 6.356 7 C 0.271 3.729 8 O -0.459 6.459 9 N -0.362 5.362 10 C 0.048 3.952 11 C -0.062 4.062 12 C -0.178 4.178 13 C -0.091 4.091 14 C -0.247 4.247 15 C 0.071 3.929 16 O -0.152 6.152 17 C -0.475 4.475 18 H 0.101 0.899 19 C -0.187 4.187 20 N -0.563 5.563 21 Si 0.790 3.210 22 H -0.193 1.193 23 H -0.193 1.193 24 H -0.186 1.186 25 C -0.189 4.189 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.088 0.912 33 H 0.239 0.761 34 H 0.251 0.749 35 H 0.087 0.913 36 H 0.102 0.898 37 H 0.166 0.834 38 H 0.161 0.839 39 H 0.128 0.872 40 H 0.094 0.906 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.374 -16.997 12.241 21.894 hybrid contribution -1.115 1.068 -0.265 1.566 sum 5.260 -15.929 11.976 20.611 Atomic orbital electron populations 1.21797 0.95602 1.02105 1.01824 1.21429 0.95806 0.94996 1.03069 1.22275 0.92473 0.99396 1.04048 1.21972 0.94802 0.88986 0.90273 0.83983 1.86547 1.77785 1.55415 1.15859 1.22184 0.79147 0.89897 0.81717 1.90703 1.42448 1.72187 1.40602 1.46075 1.57098 1.14071 1.18924 1.20058 0.99914 0.82261 0.92921 1.19451 0.93225 0.98186 0.95304 1.21037 1.01002 1.04080 0.91703 1.21139 0.94417 0.95013 0.98564 1.21406 0.97676 1.06781 0.98887 1.19570 0.85531 0.92946 0.94862 1.83519 1.32731 1.63461 1.35498 1.20706 1.09656 1.29852 0.87309 0.89907 1.25249 0.98923 0.94701 0.99826 1.69727 1.28963 1.33327 1.24294 0.85254 0.77655 0.79454 0.78595 1.19296 1.19282 1.18572 1.20268 0.98875 1.05097 0.94619 0.92042 0.92928 0.92812 0.91401 0.90955 0.89687 0.91233 0.76061 0.74907 0.91267 0.89782 0.83377 0.83867 0.87235 0.90571 0.85827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 9.91 71.98 0.71 -1.17 16 2 C -0.12 -1.35 5.83 30.59 0.18 -1.17 16 3 C -0.14 -1.84 4.86 30.59 0.15 -1.69 16 4 C 0.10 1.56 3.38 29.85 0.10 1.66 16 5 H 0.14 1.66 8.14 -2.39 -0.02 1.64 16 6 O -0.55 -9.95 12.53 -129.99 -1.63 -11.58 16 7 C 0.48 10.33 7.17 87.66 0.63 10.96 16 8 O -0.58 -17.20 16.32 15.94 0.26 -16.94 16 9 N -0.71 -13.76 5.45 -466.79 -2.54 -16.30 16 10 C 0.17 3.95 5.80 85.63 0.50 4.45 16 11 C -0.06 -1.67 5.25 -19.88 -0.10 -1.77 16 12 C -0.16 -4.10 9.70 22.30 0.22 -3.89 16 13 C -0.07 -2.23 10.04 22.25 0.22 -2.00 16 14 C -0.23 -9.22 9.17 22.39 0.21 -9.02 16 15 C 0.12 5.22 6.65 22.58 0.15 5.37 16 16 O -0.24 -12.71 8.59 -22.76 -0.20 -12.90 16 17 C -0.40 -22.74 9.95 67.92 0.68 -22.06 16 18 H 0.08 4.93 5.44 -2.91 -0.02 4.91 16 19 C 0.01 0.66 5.49 84.83 0.47 1.12 16 20 N -0.92 -54.01 13.96 21.61 0.30 -53.70 16 21 Si 0.97 44.31 28.62 68.60 1.96 46.27 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 23 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 24 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 25 C -0.17 -5.89 9.65 22.39 0.22 -5.68 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.07 0.84 7.82 -2.38 -0.02 0.82 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.08 1.03 7.77 -2.39 -0.02 1.01 16 32 H 0.07 0.95 8.14 -2.38 -0.02 0.94 16 33 H 0.39 5.72 8.79 -74.06 -0.65 5.07 16 34 H 0.41 6.53 8.17 -92.72 -0.76 5.77 16 35 H 0.07 1.72 8.08 -2.39 -0.02 1.70 16 36 H 0.08 1.85 8.08 -2.39 -0.02 1.83 16 37 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 38 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 39 H 0.11 4.95 5.64 -2.91 -0.02 4.93 16 40 H 0.28 15.30 8.31 -92.71 -0.77 14.53 16 41 H 0.12 4.13 8.06 -2.91 -0.02 4.10 16 Total: -1.00 -69.09 350.75 2.12 -66.97 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: -0.35 Total: 23.07 kcal Atomic # 6 Polarization: -29.20 SS G_CDS: 4.31 Total: -24.89 kcal Atomic # 7 Polarization: -67.76 SS G_CDS: -2.24 Total: -70.01 kcal Atomic # 8 Polarization: -39.85 SS G_CDS: -1.56 Total: -41.41 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.96 Total: 46.27 kcal Total: -69.09 2.12 -66.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336313480.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.192 kcal (2) G-P(sol) polarization free energy of solvation -69.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds